ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATPG_BUCAI (P57123) ATP synthase gamma chain (EC 3.6.3.14) (ATP ... 28 5.5
2VPC_BPMU (P06022) Positive regulator of late transcription (Prot... 28 7.2
3ADK_CRIGR (P55262) Adenosine kinase (EC 2.7.1.20) (AK) (Adenosin... 27 9.4
4ADK_HUMAN (P55263) Adenosine kinase (EC 2.7.1.20) (AK) (Adenosin... 27 9.4

>ATPG_BUCAI (P57123) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1|
           sector gamma subunit)
          Length = 290

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 182 AANSYTNLVFRPSNKTVVQTIFSEYIEQYLSQ 277
           A+N+  + ++ P +K ++ T+F+ YIE  + Q
Sbjct: 199 ASNNNWDYLYEPESKLILDTLFNRYIESQVYQ 230



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>VPC_BPMU (P06022) Positive regulator of late transcription (Protein C)|
          Length = 140

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 364 RNQMPRKRLTIQNQNLMMSCDY*D-QLLIPLGEILLNILREDSLYHSFV*RPKDEV 200
           R  +   R   + Q + +SC     Q  IP G+ +L  LR+D LY  F  R  +E+
Sbjct: 48  RQNVSNPRELARKQAVALSCFLGGRQFYIPCGDTILTALRDDLLYCQFNGRNMEEL 103



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>ADK_CRIGR (P55262) Adenosine kinase (EC 2.7.1.20) (AK) (Adenosine|
           5'-phosphotransferase)
          Length = 361

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 224 CLTAERRGLCRNSRQARCYMGEKNL 150
           C+T + R L  N   A CY  EK+L
Sbjct: 142 CITGDNRSLVANLAAANCYKKEKHL 166



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>ADK_HUMAN (P55263) Adenosine kinase (EC 2.7.1.20) (AK) (Adenosine|
           5'-phosphotransferase)
          Length = 362

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 224 CLTAERRGLCRNSRQARCYMGEKNL 150
           C+T + R L  N   A CY  EK+L
Sbjct: 143 CITGDNRSLIANLAAANCYKKEKHL 167


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,172,635
Number of Sequences: 219361
Number of extensions: 862595
Number of successful extensions: 1465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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