>STP2_PANPA (Q9N1A6) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
 Frame = +2

Query: 41  TKHGSFPVTHIQ-------QICPSTRARQ--AQLCRSAHNGLHCSHAPEFYTTYKLIAAA 193
           TK  S P+TH Q       Q C  T  RQ  +Q CR +H G     + +   +++    A
Sbjct: 3   TKTHSLPITHTQLHSNSQPQSCTCTHHRQTFSQSCRQSHRGSRSRSSSQSPASHRNPTGA 62

Query: 194 QSPDG 208
            S  G
Sbjct: 63  HSSSG 67

>YDBA_ECOLI (P33666) Hypothetical protein ydbA|
          Length = 2003

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +2

Query: 275 TWPDDESRRRTVHLLPVPPTGLLDRQQLVADDPREAPEPP 394
           T PDDES        PVPPT   D  +++ DDP + P PP
Sbjct: 105 TPPDDESDDT-----PVPPTPGGD--EIIPDDPDDTPTPP 137

>ATG12_NEUCR (Q7S083) Autophagy-related protein 12 (Autophagy-related|
           ubiquitin-like modifier atg-12)
          Length = 157

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 36  ARPSTVHFQSHTSSKSVRPHEQGRHSSAAQLTMVCTAVM 152
           A PS VH  ++ +S +  P  +GR S    LTM  + V+
Sbjct: 11  ASPSLVHDDNNPNSSTASPVLEGRDSPNLPLTMTASTVL 49

>YQBO_BACSU (P45931) Hypothetical protein yqbO|
          Length = 1585

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 351 SSSSQMIHGKLQNRLFPGWWWSG 419
           SS  Q + GKL++ LF   WWSG
Sbjct: 922 SSVWQSVKGKLKSTLFSEKWWSG 944

>DCTD_RHILE (P10046) C4-dicarboxylate transport transcriptional regulatory|
           protein dctD
          Length = 448

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 19  D*PPAKPDQARFISSHTHPANL 84
           D PP  PD  R ++SHT P N+
Sbjct: 341 DVPPLSPDVRRHLASHTWPGNV 362


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,500,411
Number of Sequences: 219361
Number of extensions: 1432918
Number of successful extensions: 4100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4098
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)