ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472792.1| Oryza sativa (japonica cultivar-group), predic... 66 1e-07
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
3dbj|AK064379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
4emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 66 1e-07
5gb|AY110414.1| Zea mays CL3242_1 mRNA sequence 60 6e-06
6gb|AC110819.5| Mus musculus BAC clone RP23-239K2 from chromosome... 48 0.024
7gb|AC105391.1| Homo sapiens BAC clone RP11-311D14 from 4, comple... 44 0.37
8emb|AL954308.12| Zebrafish DNA sequence from clone DKEY-13J15 in... 42 1.5
9emb|BX664748.8| Zebrafish DNA sequence from clone DKEY-3N7 in li... 42 1.5
10gb|AC124333.13| Mus musculus chromosome 1, clone RP24-511E9, com... 40 5.8
11gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 5.8
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.8
13emb|CR450788.7| Zebrafish DNA sequence from clone DKEY-15P23 in ... 40 5.8
14emb|AL607043.12| Human DNA sequence from clone RP11-309P22 on ch... 40 5.8
15gb|AC008991.8| Homo sapiens chromosome 19 clone LLNLF-58H11, com... 40 5.8
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
17gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom... 40 5.8
18gb|AC008395.6|AC008395 Homo sapiens chromosome 19 clone CTC-244M... 40 5.8 
>ref|XM_472792.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3411

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 340  ccttgatcgtcagcagctcgtcgcagatgatccacgggaagctccagaaccgc 392
            ||||||||| |||||| | |||||||  |||||||||||||||||||||||||
Sbjct: 3334 ccttgatcgccagcaggttgtcgcaggcgatccacgggaagctccagaaccgc 3282
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 340      ccttgatcgtcagcagctcgtcgcagatgatccacgggaagctccagaaccgc 392
                ||||||||| |||||| | |||||||  |||||||||||||||||||||||||
Sbjct: 23264592 ccttgatcgccagcaggttgtcgcaggcgatccacgggaagctccagaaccgc 23264540
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>dbj|AK064379.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-D10, full
            insert sequence
          Length = 1618

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 340  ccttgatcgtcagcagctcgtcgcagatgatccacgggaagctccagaaccgc 392
            ||||||||| |||||| | |||||||  |||||||||||||||||||||||||
Sbjct: 1059 ccttgatcgccagcaggttgtcgcaggcgatccacgggaagctccagaaccgc 1007
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>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
              complete sequence
          Length = 121337

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                   
Query: 340    ccttgatcgtcagcagctcgtcgcagatgatccacgggaagctccagaaccgc 392
              ||||||||| |||||| | |||||||  |||||||||||||||||||||||||
Sbjct: 102745 ccttgatcgccagcaggttgtcgcaggcgatccacgggaagctccagaaccgc 102693
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>gb|AY110414.1| Zea mays CL3242_1 mRNA sequence
          Length = 590

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 359 gtcgcagatgatccacgggaagctccagaaccgc 392
           |||||||| |||||||||||||||||||||||||
Sbjct: 234 gtcgcagacgatccacgggaagctccagaaccgc 267
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>gb|AC110819.5| Mus musculus BAC clone RP23-239K2 from chromosome 6, complete sequence
          Length = 200741

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 121   ctcagctcacaatggtctgcactg 144
             ||||||||||||||||||||||||
Sbjct: 81360 ctcagctcacaatggtctgcactg 81337
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>gb|AC105391.1| Homo sapiens BAC clone RP11-311D14 from 4, complete sequence
          Length = 143498

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 63    tcacacacatccagcaaatctg 84
             ||||||||||||||||||||||
Sbjct: 34267 tcacacacatccagcaaatctg 34246
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>emb|AL954308.12| Zebrafish DNA sequence from clone DKEY-13J15 in linkage group 4, complete
              sequence
          Length = 223608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 66     cacacatccagcaaatctgtc 86
              |||||||||||||||||||||
Sbjct: 156142 cacacatccagcaaatctgtc 156122
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>emb|BX664748.8| Zebrafish DNA sequence from clone DKEY-3N7 in linkage group 4, complete
             sequence
          Length = 206047

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 66    cacacatccagcaaatctgtc 86
             |||||||||||||||||||||
Sbjct: 72232 cacacatccagcaaatctgtc 72212
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>gb|AC124333.13| Mus musculus chromosome 1, clone RP24-511E9, complete sequence
          Length = 185857

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    tacatacaaactcatagcag 188
              ||||||||||||||||||||
Sbjct: 124641 tacatacaaactcatagcag 124622
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 399     cccggctggtggtggtccgg 418
               ||||||||||||||||||||
Sbjct: 3433144 cccggctggtggtggtccgg 3433125
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 161      ttttacactacatacaaact 180
                ||||||||||||||||||||
Sbjct: 33969884 ttttacactacatacaaact 33969865
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>emb|CR450788.7| Zebrafish DNA sequence from clone DKEY-15P23 in linkage group 12,
             complete sequence
          Length = 115480

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   ggttacaacttattattaca 249
             ||||||||||||||||||||
Sbjct: 55288 ggttacaacttattattaca 55307
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>emb|AL607043.12| Human DNA sequence from clone RP11-309P22 on chromosome 10 Contains a
             ribosomal protein S6 (RPS6) pseudogene, complete sequence
          Length = 169841

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   attattacatcttcttgcca 260
             ||||||||||||||||||||
Sbjct: 85049 attattacatcttcttgcca 85068
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>gb|AC008991.8| Homo sapiens chromosome 19 clone LLNLF-58H11, complete sequence
          Length = 40272

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 92    acacgagcaaggcaggcacagctc 115
             ||||||||||||||| ||||||||
Sbjct: 26505 acacgagcaaggcagacacagctc 26528
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 161      ttttacactacatacaaact 180
                ||||||||||||||||||||
Sbjct: 34060356 ttttacactacatacaaact 34060337
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>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete
             sequence
          Length = 172337

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   ttttacactacatacaaact 180
             ||||||||||||||||||||
Sbjct: 87807 ttttacactacatacaaact 87826
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>gb|AC008395.6|AC008395 Homo sapiens chromosome 19 clone CTC-244M17, complete sequence
          Length = 109485

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    gagcaaggcaggcacagctc 115
             ||||||||||||||||||||
Sbjct: 81684 gagcaaggcaggcacagctc 81703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,046,243
Number of Sequences: 3902068
Number of extensions: 3046243
Number of successful extensions: 51584
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51484
Number of HSP's gapped (non-prelim): 100
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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