ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl43b03 |
|---|---|
| Clone Library Name | barley_pub |
>ODO1_RICPR (Q9ZDY3) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 936 Score = 35.8 bits (81), Expect = 0.028 Identities = 18/40 (45%), Positives = 26/40 (65%) Frame = -1 Query: 301 DDIKYVGRAPSAATATGFYTVHVQEQTELVKKALQPDPIK 182 ++ KYVGR SA+ A G VH ++Q +L+ +AL D IK Sbjct: 893 NEFKYVGREESASPAVGSLQVHNKQQEKLLMEALGDDIIK 932
>ODO1_CAEBR (Q623T0) 2-oxoglutarate dehydrogenase E1 component, mitochondrial| precursor (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) Length = 1027 Score = 34.7 bits (78), Expect = 0.062 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = -1 Query: 292 KYVGRAPSAATATGFYTVHVQEQTELVKK 206 KY GR PS++ ATG H+QEQ E++ K Sbjct: 985 KYAGRLPSSSPATGNKYTHMQEQKEMMSK 1013
>ODO1_CAEEL (O61199) 2-oxoglutarate dehydrogenase E1 component, mitochondrial| precursor (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) Length = 1029 Score = 34.7 bits (78), Expect = 0.062 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = -1 Query: 292 KYVGRAPSAATATGFYTVHVQEQTELVKK 206 KY GR PS++ ATG H+QEQ E++ K Sbjct: 987 KYAGRLPSSSPATGNKFTHMQEQKEMMSK 1015
>ODO1_BUCAI (P57388) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 909 Score = 34.3 bits (77), Expect = 0.081 Identities = 12/32 (37%), Positives = 24/32 (75%) Frame = -1 Query: 295 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 200 +KY+GR+ SA+ A G+ ++H ++Q +++ AL Sbjct: 875 LKYIGRSSSASPAVGYISIHKKQQEKIIYNAL 906
>ODO1_BUCBP (Q89AJ7) Oxoglutarate dehydrogenase (EC 1.2.4.2)| Length = 916 Score = 33.9 bits (76), Expect = 0.11 Identities = 13/32 (40%), Positives = 23/32 (71%) Frame = -1 Query: 295 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 200 + YVGR+ SA+ ATG+ +H ++Q +++ AL Sbjct: 881 LNYVGRSSSASPATGYMKIHKEQQKKIIYDAL 912
>ODO1_ECOLI (P0AFG3) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 933 Score = 33.5 bits (75), Expect = 0.14 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -1 Query: 295 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 200 ++Y GR SA+ A G+ +VH ++Q +LV AL Sbjct: 899 LRYAGRPASASPAVGYMSVHQKQQQDLVNDAL 930
>ODO1_ECOL6 (P0AFG4) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 933 Score = 33.5 bits (75), Expect = 0.14 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -1 Query: 295 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 200 ++Y GR SA+ A G+ +VH ++Q +LV AL Sbjct: 899 LRYAGRPASASPAVGYMSVHQKQQQDLVNDAL 930
>ODO1_ECO57 (P0AFG5) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 933 Score = 33.5 bits (75), Expect = 0.14 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -1 Query: 295 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 200 ++Y GR SA+ A G+ +VH ++Q +LV AL Sbjct: 899 LRYAGRPASASPAVGYMSVHQKQQQDLVNDAL 930
>ODO1_RICCN (Q92J42) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 928 Score = 33.1 bits (74), Expect = 0.18 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = -1 Query: 310 GSIDDIKYVGRAPSAATATGFYTVHVQEQTELVKKAL 200 G ++ KYVGR SA+ A G VH ++Q +L++ AL Sbjct: 890 GIKNEFKYVGREESASPAVGSLQVHNKQQEKLLRTAL 926
>ATU_DROME (Q94546) Another transcription unit protein| Length = 725 Score = 32.3 bits (72), Expect = 0.31 Identities = 22/60 (36%), Positives = 31/60 (51%) Frame = -2 Query: 225 KPSS*RRRCSQTPSSPRSERVGSLHSHESF*SPTMQKNNRSKLQPFGE*SLRMCGTARVR 46 + S R R S TP SP+S R GSL S +S SP +++ + + G R G+A R Sbjct: 93 RSGSARSRKSGTPESPQSHRSGSLQSRKSG-SPQSRRSGSPQSRKSGSTHSRRSGSAHSR 151
>ODO1_COXBU (P51056) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 934 Score = 32.0 bits (71), Expect = 0.40 Identities = 14/33 (42%), Positives = 24/33 (72%) Frame = -1 Query: 295 IKYVGRAPSAATATGFYTVHVQEQTELVKKALQ 197 ++YVGR+ AA A G+ ++V+ Q +LV +AL+ Sbjct: 901 LEYVGRSAFAAPAAGYSALYVKLQEQLVNQALE 933
>ODO1_AZOVI (P20707) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 943 Score = 30.8 bits (68), Expect = 0.89 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = -1 Query: 295 IKYVGRAPSAATATGFYTVHVQEQTELVKKA 203 ++Y GR SAA A G+ ++H ++Q +L++ A Sbjct: 910 LQYAGREASAAPACGYASMHAEQQEKLLQDA 940
>TNF10_HUMAN (P50591) Tumor necrosis factor ligand superfamily member 10| (TNF-related apoptosis-inducing ligand) (TRAIL protein) (Apo-2 ligand) (Apo-2L) (CD253 antigen) Length = 281 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = +3 Query: 117 SAW*EIRSSHGYAKNLHVQNGDLM 188 ++W RS H + NLH++NG+L+ Sbjct: 152 NSWESSRSGHSFLSNLHLRNGELV 175
>ODO1_LEPIN (Q8F6S7) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 920 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -1 Query: 289 YVGRAPSAATATGFYTVHVQEQTELVKKALQ 197 Y GR S + A G +H+QEQ +LV A Q Sbjct: 889 YAGRHESPSPAAGHMKLHLQEQDQLVLDAFQ 919
>ODO1_LEPIC (Q72PJ7) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 920 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -1 Query: 289 YVGRAPSAATATGFYTVHVQEQTELVKKALQ 197 Y GR S + A G +H+QEQ +LV A Q Sbjct: 889 YAGRHESPSPAAGHMKLHLQEQDQLVLDAFQ 919
>ODO1_GEOKA (Q5L172) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 950 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -1 Query: 298 DIKYVGRAPSAATATGFYTVHVQEQTELVKKAL 200 D+ Y+GR A+ A G VH +EQ +++ AL Sbjct: 914 DVSYIGRRRRASPAEGDPVVHRKEQERIIRCAL 946
>ODO1_MACFA (Q60HE2) 2-oxoglutarate dehydrogenase E1 component, mitochondrial| precursor (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) Length = 1023 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -1 Query: 289 YVGRAPSAATATGFYTVHVQEQTELVKKALQPDPIKS 179 Y GR P+AA ATG H+ E L+ A D K+ Sbjct: 985 YAGRDPAAAPATGNKKTHLTELQRLLDTAFDLDVFKN 1021
>ODO1_RALEU (Q59106) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 950 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1 Query: 289 YVGRAPSAATATGFYTVHVQEQTELVKKA 203 Y GR SA+ A G+Y H ++Q L++ A Sbjct: 911 YAGRPASASPAVGYYAKHNEQQKALLEAA 939
>ODO1_PONPY (Q5RCB8) 2-oxoglutarate dehydrogenase E1 component, mitochondrial| precursor (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) Length = 1023 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -1 Query: 289 YVGRAPSAATATGFYTVHVQEQTELVKKALQPDPIKS 179 Y GR P+AA ATG H+ E L+ A D K+ Sbjct: 985 YAGRDPAAAPATGNKKTHLTELQRLLDTAFDLDIFKN 1021
>LEU3_BACTN (Q8A6M0) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 353 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = +2 Query: 98 NLDLLFFCMVGDQKLSWLCKEPTRSERGLDGVWLQRLLHELGLFLHMDSVKTCSC 262 N D + F VGD K +PT R G+ R +LGLF ++ V+T C Sbjct: 65 NADAVLFSAVGDPKFD---NDPTAKVRPEQGLLAMR--KKLGLFANIRPVQTFKC 114
>LEU3_BACFR (P54354) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 353 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = +2 Query: 98 NLDLLFFCMVGDQKLSWLCKEPTRSERGLDGVWLQRLLHELGLFLHMDSVKTCSC 262 N D + F VGD K +PT R G+ R +LGLF ++ V+T C Sbjct: 65 NADAVLFSAVGDPKFD---NDPTAKVRPEQGLLAMR--KKLGLFANIRPVQTFKC 114
>LEU3_BACFN (Q5LAB4) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 353 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = +2 Query: 98 NLDLLFFCMVGDQKLSWLCKEPTRSERGLDGVWLQRLLHELGLFLHMDSVKTCSC 262 N D + F VGD K +PT R G+ R +LGLF ++ V+T C Sbjct: 65 NADAVLFSAVGDPKFD---NDPTAKVRPEQGLLAMR--KKLGLFANIRPVQTFKC 114
>IF2_PROMA (Q7VA20) Translation initiation factor IF-2| Length = 1134 Score = 28.5 bits (62), Expect = 4.4 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Frame = -2 Query: 240 SMCRNKPSS*RRRCSQTPSSPRS--ERVGSLHSHESF*SPTMQKNNRSKLQP 91 S +NKP+S ++ +P P + +RV ++ +P++ KNN K+QP Sbjct: 102 SSLKNKPASPKKEIPTSPKPPSAAKQRVDAIKKP----TPSISKNNSLKVQP 149
>ODO1_MOUSE (Q60597) 2-oxoglutarate dehydrogenase E1 component, mitochondrial| precursor (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) Length = 1019 Score = 28.5 bits (62), Expect = 4.4 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = -1 Query: 313 RGSIDDIK---YVGRAPSAATATGFYTVHVQEQTELVKKALQPDPIK 182 R +ID K Y GR P+AA ATG H+ E + A D K Sbjct: 970 RTTIDRAKPVWYAGRDPAAAPATGNKKTHLTELQRFLDTAFDLDAFK 1016
>ODO1_BACLD (Q65IH4) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 944 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -1 Query: 295 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 200 ++Y+GR ++ A G TVH +EQ +V +L Sbjct: 909 VRYIGRRRRSSPAEGDPTVHKKEQERIVSDSL 940
>GLGA_BACST (O08328) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 485 Score = 28.1 bits (61), Expect = 5.8 Identities = 17/36 (47%), Positives = 22/36 (61%) Frame = -1 Query: 304 IDDIKYVGRAPSAATATGFYTVHVQEQTELVKKALQ 197 IDD Y A TAT Y+VH +E+ +L K+ALQ Sbjct: 249 IDDEFYNPEADPFLTAT--YSVHTRERKQLNKRALQ 282
>ODO1_BACSU (P23129) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 941 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -1 Query: 295 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 200 ++Y+GR ++ A G TVH +EQ +V +L Sbjct: 906 VQYIGRRRRSSPAEGDPTVHKKEQERIVSDSL 937
>CR1AF_BACTU (P96315) Pesticidal crystal protein cry1Af (Insecticidal| delta-endotoxin CryIA(f)) (Crystaline entomocidal protoxin) (Fragment) Length = 911 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/43 (32%), Positives = 28/43 (65%) Frame = -3 Query: 200 AARPHQVPVLNV*VLCIAMRASDLLPCRKTTGLNYSHLVNNRY 72 A + +QVP+L+V V C + +S+ + C + +G + + +N+RY Sbjct: 149 AVQNYQVPLLSVYVTCNYIISSESVMCGQRSGFD-AATINSRY 190
>CABL1_MOUSE (Q9ESJ1) CDK5 and ABL1 enzyme substrate 1 (Interactor with CDK3 1)| (Ik3-1) Length = 568 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +3 Query: 183 LMGSGCSAFFTSSVCSCTWTV*KPVAVAADGALPTYLISSMLPR 314 L+ +GC+AF + WT A G+ P L S++PR Sbjct: 99 LLAAGCNAFSAPGTAAAPWT-------AGSGSSPCPLPPSLVPR 135
>MTMR3_MOUSE (Q8K296) Myotubularin-related protein 3 (EC 3.1.3.48)| Length = 1075 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 301 DDIKYVGRAPSAATATGFYTVHVQEQTELVKKALQ 197 + +YVGRA A A Y +H++ + LV LQ Sbjct: 40 ESTEYVGRAEEAIIALSNYRLHIKFKESLVNVPLQ 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,998,388 Number of Sequences: 219361 Number of extensions: 971019 Number of successful extensions: 2350 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2316 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2349 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
