ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 129 6e-27
2dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 6e-27
3dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 6e-27
4dbj|AK060837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 6e-27
5emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 129 6e-27
6gb|BT019203.1| Zea mays clone Contig876.F mRNA sequence 62 1e-06
7gb|BT018365.1| Zea mays clone EL01N0311E09.c mRNA sequence 62 1e-06
8gb|AY103815.1| Zea mays PCO096873 mRNA sequence 54 3e-04
9gb|AY491010.1| Leishmania major Hut1L protein (Hut1L) gene, comp... 42 1.1
10gb|AC121303.24| Mus musculus chromosome 8, clone RP23-335A5, com... 40 4.2
11gb|AC087289.9| Homo sapiens chromosome 17, clone RP11-552F3, com... 40 4.2
12emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chro... 40 4.2
13emb|AL358216.33| Human DNA sequence from clone RP11-809C18 on ch... 40 4.2
14emb|AL672262.11| Mouse DNA sequence from clone RP23-318G8 on chr... 40 4.2
15emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 i... 40 4.2
16emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, c... 40 4.2
17dbj|AK130224.1| Homo sapiens cDNA FLJ26714 fis, clone PNC01043 40 4.2 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  129 bits (65), Expect = 6e-27
 Identities = 137/161 (85%)
 Strand = Plus / Minus

                                                                            
Query: 162      ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 221
                ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 19193103 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 19193044

                                                                            
Query: 222      gtttgttcctgcacatggacagtgtaaaaacctgtagctgtggctgcagatggggccctt 281
                ||||| |||||||||||||| | ||| |||||||| || |||||||||||||||||||||
Sbjct: 19193043 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 19192984

                                                         
Query: 282      ccgacgtacttgatatcatctatgctgccacgaccgagcgc 322
                || ||||| ||||| || |||||  |||| ||||| |||||
Sbjct: 19192983 ccaacgtatttgatgtcgtctatcgtgccccgaccaagcgc 19192943



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       gattattcaccaaatggctg 96
                ||||||||||||||||||||
Sbjct: 19193185 gattattcaccaaatggctg 19193166
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>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full
            insert sequence
          Length = 3612

 Score =  129 bits (65), Expect = 6e-27
 Identities = 137/161 (85%)
 Strand = Plus / Minus

                                                                        
Query: 162  ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 221
            ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 3333 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 3274

                                                                        
Query: 222  gtttgttcctgcacatggacagtgtaaaaacctgtagctgtggctgcagatggggccctt 281
            ||||| |||||||||||||| | ||| |||||||| || |||||||||||||||||||||
Sbjct: 3273 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 3214

                                                     
Query: 282  ccgacgtacttgatatcatctatgctgccacgaccgagcgc 322
            || ||||| ||||| || |||||  |||| ||||| |||||
Sbjct: 3213 ccaacgtatttgatgtcgtctatcgtgccccgaccaagcgc 3173



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 77   gattattcaccaaatggctg 96
            ||||||||||||||||||||
Sbjct: 3415 gattattcaccaaatggctg 3396
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>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full
            insert sequence
          Length = 3581

 Score =  129 bits (65), Expect = 6e-27
 Identities = 137/161 (85%)
 Strand = Plus / Minus

                                                                        
Query: 162  ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 221
            ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 3379 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 3320

                                                                        
Query: 222  gtttgttcctgcacatggacagtgtaaaaacctgtagctgtggctgcagatggggccctt 281
            ||||| |||||||||||||| | ||| |||||||| || |||||||||||||||||||||
Sbjct: 3319 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 3260

                                                     
Query: 282  ccgacgtacttgatatcatctatgctgccacgaccgagcgc 322
            || ||||| ||||| || |||||  |||| ||||| |||||
Sbjct: 3259 ccaacgtatttgatgtcgtctatcgtgccccgaccaagcgc 3219



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 77   gattattcaccaaatggctg 96
            ||||||||||||||||||||
Sbjct: 3461 gattattcaccaaatggctg 3442
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>dbj|AK060837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C11, full
            insert sequence
          Length = 1546

 Score =  129 bits (65), Expect = 6e-27
 Identities = 137/161 (85%)
 Strand = Plus / Minus

                                                                        
Query: 162  ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 221
            ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 1314 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 1255

                                                                        
Query: 222  gtttgttcctgcacatggacagtgtaaaaacctgtagctgtggctgcagatggggccctt 281
            ||||| |||||||||||||| | ||| |||||||| || |||||||||||||||||||||
Sbjct: 1254 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 1195

                                                     
Query: 282  ccgacgtacttgatatcatctatgctgccacgaccgagcgc 322
            || ||||| ||||| || |||||  |||| ||||| |||||
Sbjct: 1194 ccaacgtatttgatgtcgtctatcgtgccccgaccaagcgc 1154



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 77   gattattcaccaaatggctg 96
            ||||||||||||||||||||
Sbjct: 1396 gattattcaccaaatggctg 1377
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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
              complete sequence
          Length = 151936

 Score =  129 bits (65), Expect = 6e-27
 Identities = 137/161 (85%)
 Strand = Plus / Minus

                                                                          
Query: 162    ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 221
              ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 126625 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 126566

                                                                          
Query: 222    gtttgttcctgcacatggacagtgtaaaaacctgtagctgtggctgcagatggggccctt 281
              ||||| |||||||||||||| | ||| |||||||| || |||||||||||||||||||||
Sbjct: 126565 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 126506

                                                       
Query: 282    ccgacgtacttgatatcatctatgctgccacgaccgagcgc 322
              || ||||| ||||| || |||||  |||| ||||| |||||
Sbjct: 126505 ccaacgtatttgatgtcgtctatcgtgccccgaccaagcgc 126465



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     gattattcaccaaatggctg 96
              ||||||||||||||||||||
Sbjct: 126707 gattattcaccaaatggctg 126688
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>gb|BT019203.1| Zea mays clone Contig876.F mRNA sequence
          Length = 703

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 103/127 (81%)
 Strand = Plus / Minus

                                                                       
Query: 169 ttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgtt 228
           ||||||||||| | |||||||||||  ||||||| ||||| | ||| ||||| || || |
Sbjct: 468 ttcagaacgggtagttgatggggtcgcgctgcagggccttttgcaccagctccgtctgct 409

                                                                       
Query: 229 cctgcacatggacagtgtaaaaacctgtagctgtggctgcagatggggcccttccgacgt 288
           ||||||| || || | ||| || || ||||| || || || || |||||||| |||||||
Sbjct: 408 cctgcacgtgcaccgagtagaagcccgtagcagtagcagccgacggggccctgccgacgt 349

                  
Query: 289 acttgat 295
           |||||||
Sbjct: 348 acttgat 342
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>gb|BT018365.1| Zea mays clone EL01N0311E09.c mRNA sequence
          Length = 674

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 103/127 (81%)
 Strand = Plus / Minus

                                                                       
Query: 169 ttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgtt 228
           ||||||||||| | |||||||||||  ||||||| ||||| | ||| ||||| || || |
Sbjct: 470 ttcagaacgggtagttgatggggtcgcgctgcagggccttttgcaccagctccgtctgct 411

                                                                       
Query: 229 cctgcacatggacagtgtaaaaacctgtagctgtggctgcagatggggcccttccgacgt 288
           ||||||| || || | ||| || || ||||| || || || || |||||||| |||||||
Sbjct: 410 cctgcacgtgcaccgagtagaagcccgtagcagtagcagccgacggggccctgccgacgt 351

                  
Query: 289 acttgat 295
           |||||||
Sbjct: 350 acttgat 344
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>gb|AY103815.1| Zea mays PCO096873 mRNA sequence
          Length = 1431

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 102/127 (80%)
 Strand = Plus / Minus

                                                                        
Query: 169  ttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgtt 228
            ||||||| ||| | |||| ||||||  ||||||||||||||| ||| ||||| || || |
Sbjct: 1130 ttcagaaagggtagttgagggggtcgcgctgcagcgccttctgcaccagctccgtctgct 1071

                                                                        
Query: 229  cctgcacatggacagtgtaaaaacctgtagctgtggctgcagatggggcccttccgacgt 288
            ||||||| || || | ||| || || || || || || || || |||||||| |||||||
Sbjct: 1070 cctgcacgtgcaccgagtagaagcccgtcgcggtagcagccgacggggccctgccgacgt 1011

                   
Query: 289  acttgat 295
            |||||||
Sbjct: 1010 acttgat 1004
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>gb|AY491010.1| Leishmania major Hut1L protein (Hut1L) gene, complete cds
          Length = 1732

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 48  taacgcgcgcggtaccacaca 68
           |||||||||||||||||||||
Sbjct: 675 taacgcgcgcggtaccacaca 655
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>gb|AC121303.24| Mus musculus chromosome 8, clone RP23-335A5, complete sequence
          Length = 205158

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 230    ctgcacatggacagtgtaaaaacc 253
              |||||||| |||||||||||||||
Sbjct: 166554 ctgcacatagacagtgtaaaaacc 166577
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>gb|AC087289.9| Homo sapiens chromosome 17, clone RP11-552F3, complete sequence
          Length = 203765

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ctgtggctgcagatggggcc 278
             ||||||||||||||||||||
Sbjct: 32852 ctgtggctgcagatggggcc 32833
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>emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chromosome 6 Contains novel
              pseudogene, complete sequence
          Length = 204235

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    tcatggctatgcaaagaacc 162
              ||||||||||||||||||||
Sbjct: 122766 tcatggctatgcaaagaacc 122747
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>emb|AL358216.33| Human DNA sequence from clone RP11-809C18 on chromosome 10 Contains two
             novel genes, the gene for a novel protein (FLJ38694
             FLJ38681) and five CpG islands, complete sequence
          Length = 96891

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   gtggctgcagatggggccct 280
             ||||||||||||||||||||
Sbjct: 32127 gtggctgcagatggggccct 32146
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>emb|AL672262.11| Mouse DNA sequence from clone RP23-318G8 on chromosome 11, complete
             sequence
          Length = 101598

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    accaaatggctgtaatttag 104
             ||||||||||||||||||||
Sbjct: 78854 accaaatggctgtaatttag 78835
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>emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 in linkage group 5,
              complete sequence
          Length = 179980

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      aacaaaattatgcactgaaa 26
              ||||||||||||||||||||
Sbjct: 125048 aacaaaattatgcactgaaa 125029
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>emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, complete sequence
          Length = 152913

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     aacaaaattatgcactgaaa 26
             ||||||||||||||||||||
Sbjct: 71960 aacaaaattatgcactgaaa 71979
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>dbj|AK130224.1| Homo sapiens cDNA FLJ26714 fis, clone PNC01043
          Length = 1991

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 261 gtggctgcagatggggccct 280
           ||||||||||||||||||||
Sbjct: 910 gtggctgcagatggggccct 891


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,712,334
Number of Sequences: 3902068
Number of extensions: 2712334
Number of successful extensions: 45956
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45921
Number of HSP's gapped (non-prelim): 34
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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