ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BCP_PEA (Q41001) Blue copper protein precursor 30 2.1
2JP650_ARATH (P92990) Probable polygalacturonase non-catalytic su... 28 6.1
3TYDC2_ARATH (Q9M0G4) Probable tyrosine decarboxylase 2 (EC 4.1.1... 28 8.0

>BCP_PEA (Q41001) Blue copper protein precursor|
          Length = 189

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 121 QG*SMVINLPPVLCVFFTFSWLCKLQLI 38
           Q  S   +L P++ +FFT SW+C   L+
Sbjct: 162 QNESSATSLSPIVALFFTVSWICSYVLV 189



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>JP650_ARATH (P92990) Probable polygalacturonase non-catalytic subunit JP650|
           precursor (Aromatic-rich glycoprotein JP650)
          Length = 626

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -2

Query: 174 CHPLPK----EAHVSLELYLPSKVEAW*LICHQYCAYFSPFHGYVNCNSSRQEQLNLC 13
           CH +PK    EA + LEL    K+     ICH   + + P HG      S+  ++ +C
Sbjct: 556 CHSVPKVRVYEADL-LELNSKKKINHGIAICHMDTSSWGPSHGAFLALGSKPGRIEVC 612



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>TYDC2_ARATH (Q9M0G4) Probable tyrosine decarboxylase 2 (EC 4.1.1.25)|
          Length = 545

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 256 IHLVWLTNRAHIQMEIILLSYALEMLYLP 170
           +   WLT+ A  ++EII+L +  ++L LP
Sbjct: 164 VGFTWLTSPAATELEIIVLDWLAKLLQLP 192


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,295,335
Number of Sequences: 219361
Number of extensions: 931233
Number of successful extensions: 2078
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2078
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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