ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl43a11 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 79.3 bits (194), Expect = 2e-15 Identities = 36/42 (85%), Positives = 38/42 (90%) Frame = -2 Query: 381 PQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 P+LKNR GPAKFPYMLLYPNTSDH G A GLTA+GIPNSISI Sbjct: 821 PELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 71.6 bits (174), Expect = 4e-13 Identities = 33/40 (82%), Positives = 36/40 (90%) Frame = -2 Query: 375 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 LKNR GPA+FPYMLLYPNTSD TG A G+TA+GIPNSISI Sbjct: 827 LKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 71.2 bits (173), Expect = 6e-13 Identities = 32/42 (76%), Positives = 36/42 (85%) Frame = -2 Query: 381 PQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 P LKNR GPA FPY L++PNTSD+ G AEG+TARGIPNSISI Sbjct: 822 PLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 66.2 bits (160), Expect = 2e-11 Identities = 31/42 (73%), Positives = 32/42 (76%) Frame = -2 Query: 381 PQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 P KNR GP FPY LLYPNTSD G A GL+ARGIPNSISI Sbjct: 829 PHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 62.0 bits (149), Expect = 3e-10 Identities = 31/41 (75%), Positives = 33/41 (80%), Gaps = 1/41 (2%) Frame = -2 Query: 375 LKNRTGPAKFPYMLLYPNTSDHTGQ-AEGLTARGIPNSISI 256 LKNR GP K PYMLLYPNTSD T + +GLTA GIPNSISI Sbjct: 837 LKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 50.4 bits (119), Expect = 1e-06 Identities = 26/40 (65%), Positives = 29/40 (72%) Frame = -2 Query: 375 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 L+NR GPAK PY LLYP++ EGLT RGIPNSISI Sbjct: 820 LRNRYGPAKMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 49.7 bits (117), Expect = 2e-06 Identities = 25/40 (62%), Positives = 28/40 (70%) Frame = -2 Query: 375 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 L+NR GP K PY LLYP++ EGLT RGIPNSISI Sbjct: 833 LRNRYGPVKMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 47.8 bits (112), Expect = 7e-06 Identities = 24/42 (57%), Positives = 27/42 (64%) Frame = -2 Query: 381 PQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 P L+NRTGP + PY LL H EGLT +GIPNSISI Sbjct: 829 PSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 47.8 bits (112), Expect = 7e-06 Identities = 24/41 (58%), Positives = 29/41 (70%) Frame = -2 Query: 378 QLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 +L+NR GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 827 KLRNRHGPVEMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 47.4 bits (111), Expect = 9e-06 Identities = 24/40 (60%), Positives = 27/40 (67%) Frame = -2 Query: 375 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 L NR GP + PY LL+PN +EGLT RGIPNSISI Sbjct: 833 LSNRLGPVQLPYTLLHPN-------SEGLTCRGIPNSISI 865
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 47.0 bits (110), Expect = 1e-05 Identities = 24/40 (60%), Positives = 26/40 (65%) Frame = -2 Query: 375 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 L+NR GP K PY +L P D EGLT RGIPNSISI Sbjct: 828 LRNRNGPVKMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 45.4 bits (106), Expect = 3e-05 Identities = 23/38 (60%), Positives = 26/38 (68%) Frame = -2 Query: 369 NRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 NR GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 808 NRLGPVQLPYTLLYPSSE------EGLTFRGIPNSISI 839
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 45.4 bits (106), Expect = 3e-05 Identities = 23/42 (54%), Positives = 28/42 (66%) Frame = -2 Query: 381 PQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 P L +R GP + PY LL+P++ EGLT RGIPNSISI Sbjct: 829 PSLYHRVGPVQLPYTLLHPSSK------EGLTFRGIPNSISI 864
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 45.1 bits (105), Expect = 4e-05 Identities = 23/41 (56%), Positives = 28/41 (68%) Frame = -2 Query: 378 QLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 +L+NR GP + PY LL P++ EGLT RGIPNSISI Sbjct: 823 KLRNRCGPVQMPYTLLLPSSK------EGLTFRGIPNSISI 857
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 44.7 bits (104), Expect = 6e-05 Identities = 21/39 (53%), Positives = 26/39 (66%) Frame = -2 Query: 372 KNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KNR+GP PY LL+P + EGLT +GIPNS+SI Sbjct: 827 KNRSGPVNVPYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 44.3 bits (103), Expect = 7e-05 Identities = 22/40 (55%), Positives = 27/40 (67%) Frame = -2 Query: 375 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 LKNRTG K PY LL+P++ G+T RGIPNS+SI Sbjct: 826 LKNRTGLVKMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/40 (52%), Positives = 25/40 (62%) Frame = -2 Query: 375 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 L NRTGP PY LL+P + GLT +GIPNS+SI Sbjct: 827 LTNRTGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 42.0 bits (97), Expect = 4e-04 Identities = 21/34 (61%), Positives = 24/34 (70%) Frame = -2 Query: 375 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGI 274 L+NRTGPAK PY LLYP++ EGLT RGI Sbjct: 714 LRNRTGPAKMPYTLLYPSSE------EGLTFRGI 741
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 41.2 bits (95), Expect = 6e-04 Identities = 20/40 (50%), Positives = 25/40 (62%) Frame = -2 Query: 375 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 L NR+GP PY LL+P + GLT +GIPNS+SI Sbjct: 828 LTNRSGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 861
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 36.6 bits (83), Expect = 0.015 Identities = 21/42 (50%), Positives = 24/42 (57%) Frame = -2 Query: 381 PQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 P+ KNR G PY LL P + G+T RGIPNSISI Sbjct: 861 PENKNRCGAGIVPYELLKPFSEP------GVTGRGIPNSISI 896
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 35.8 bits (81), Expect = 0.026 Identities = 19/39 (48%), Positives = 23/39 (58%) Frame = -2 Query: 372 KNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KNR G PY LL P++ G+T RG+PNSISI Sbjct: 886 KNRCGAGVLPYELLAPSSPP------GVTCRGVPNSISI 918
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 35.0 bits (79), Expect = 0.044 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -2 Query: 381 PQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 P +NR G PY L+ P++ G+T RG+PNS++I Sbjct: 864 PSRRNRCGAGVLPYELMAPSSGP------GITCRGVPNSVTI 899
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 34.3 bits (77), Expect = 0.075 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Frame = -2 Query: 381 PQLKNRTGPAKFPYMLLYPNTSDHTG----QAEGLTARGIPNSISI 256 P KNR G PY+LL P+ D T + + GIPNSISI Sbjct: 891 PDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 32.7 bits (73), Expect = 0.22 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = -2 Query: 378 QLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 890 KLKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 32.3 bits (72), Expect = 0.28 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = -2 Query: 378 QLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 907 KLKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 32.0 bits (71), Expect = 0.37 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = -2 Query: 375 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 LKNR G Y LL P TS+H G+T G+P SISI Sbjct: 863 LKNRAGAGVVKYELLKP-TSEH-----GVTGMGVPYSISI 896
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 31.2 bits (69), Expect = 0.63 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = +1 Query: 235 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 354 T DVL DG VR G +G+SR+V V EQH ELG Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -1 Query: 358 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 269 A P H A P L H +G HRQGHPE Sbjct: 231 APDAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -1 Query: 358 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 269 A P H A P L H +G HRQGHPE Sbjct: 231 APNAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = -2 Query: 372 KNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 +NR G PY+LL P + + A+ + GIPNSISI Sbjct: 895 RNRHGAGVVPYVLLRP-LNGNPMDAKTVMEMGIPNSISI 932
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Frame = -1 Query: 382 PAAQEPHRAGQVPIHAALPKHLRPHGTGRG----AHRQGHPEQHIHL 254 P+ PHR +P H P+H PH H Q HP H H+ Sbjct: 380 PSPHTPHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQ-HPPPHQHI 425
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 28.9 bits (63), Expect = 3.2 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = -2 Query: 339 MLLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVC 175 M PN + HT Q AE A+ +P S S R L LC P + P AC Sbjct: 55 MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114 Query: 174 VCDRELCRCMNN 139 +C+ CM N Sbjct: 115 LCETVRGECMEN 126
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -2 Query: 183 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 46 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -2 Query: 183 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 46 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758
>ALR1_SALTY (P0A1A3) Alanine racemase, biosynthetic (EC 5.1.1.1)| Length = 359 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +1 Query: 247 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 354 L S AVRD GEP+G GG WV + LG Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268
>ALR1_SALTI (P0A1A4) Alanine racemase, biosynthetic (EC 5.1.1.1)| Length = 359 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +1 Query: 247 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 354 L S AVRD GEP+G GG WV + LG Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268
>CB024_HUMAN (Q9BV87) Protein C2orf24| Length = 410 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -2 Query: 267 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACTTGLI 103 ++++ S V + L L C P P+L C E C +C+ + N +C G + Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303 Query: 102 GMRKL 88 G+R L Sbjct: 304 GLRSL 308
>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT| protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta) Length = 800 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = -1 Query: 289 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 203 HR EQH+ A+PSS+P F +LS+L Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777
>THII_HALSA (Q9HQ72) Probable thiamine biosynthesis protein thiI| Length = 392 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%) Frame = +1 Query: 271 RDAPGGEPLG-----LSRVVGGVWVEQHVWELGRPGA 366 RD PGG PLG ++ V GG+ WE R GA Sbjct: 170 RDGPGGMPLGTQQPLVALVSGGIDSPVAAWESMRRGA 206
>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)| Length = 194 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 88 ELPHADQTRRARTLIALIIHAPAQLSV 168 ELP D TR +RTL L+ HAP + + Sbjct: 7 ELPAPDATRISRTLSYLLRHAPQTIGL 33 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,246,060 Number of Sequences: 219361 Number of extensions: 1212773 Number of successful extensions: 3277 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 3136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3249 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
