Clone Name | rbastl43a10 |
---|---|
Clone Library Name | barley_pub |
>emb|AL603842.9| Mouse DNA sequence from clone RP23-100P23 on chromosome 11 Contains the 5' end of a novel gene, three novel genes, the Slc6a4 gene for solute carrier family 6 (neurotransmitter transporter, serotonin) member 4, the Blmh gene for bleomycin hydrolase and three CpG islands, complete sequence Length = 229289 Score = 46.1 bits (23), Expect = 0.053 Identities = 23/23 (100%) Strand = Plus / Minus Query: 35 agctacagcccaaactggaagtt 57 ||||||||||||||||||||||| Sbjct: 37222 agctacagcccaaactggaagtt 37200
>gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosome 2, complete sequence Length = 181527 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 152 accaccaaaaccacacactatt 173 |||||||||||||||||||||| Sbjct: 36530 accaccaaaaccacacactatt 36551
>emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on chromosome 2, complete sequence Length = 145652 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 152 accaccaaaaccacacactatt 173 |||||||||||||||||||||| Sbjct: 764 accaccaaaaccacacactatt 785
>emb|AL928826.9| Mouse DNA sequence from clone RP23-456N9 on chromosome 2, complete sequence Length = 180533 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 152 accaccaaaaccacacactatt 173 |||||||||||||||||||||| Sbjct: 179297 accaccaaaaccacacactatt 179318
>gb|AC112988.7| Mus musculus chromosome 5, clone RP24-294H5, complete sequence Length = 151194 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 accaccaaaaccacacactat 172 ||||||||||||||||||||| Sbjct: 71702 accaccaaaaccacacactat 71682
>gb|AC163990.2| Mus musculus chromosome 5, clone RP24-166G8, complete sequence Length = 172641 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 accaccaaaaccacacactat 172 ||||||||||||||||||||| Sbjct: 74150 accaccaaaaccacacactat 74170
>gb|AC122744.16| Mus musculus chromosome 5, clone RP23-37I24, complete sequence Length = 175214 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 accaccaaaaccacacactat 172 ||||||||||||||||||||| Sbjct: 120243 accaccaaaaccacacactat 120223
>gb|AC108442.6| Mus musculus chromosome 8, clone RP23-242M14, complete sequence Length = 209618 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 caccaaaaccacacactatt 173 |||||||||||||||||||| Sbjct: 34189 caccaaaaccacacactatt 34170
>emb|AL357499.10| Human DNA sequence from clone RP11-455L10 on chromosome 1 Contains part of the CHRM3 gene for muscarinic 3 cholinergic receptor, complete sequence Length = 150651 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aacaaaaataaaggtgcagt 25 |||||||||||||||||||| Sbjct: 47249 aacaaaaataaaggtgcagt 47268
>emb|AL008722.16|HS732E4 Human DNA sequence from clone CTA-732E4 on chromosome 22q12.1 Contains ESTs, STSs and GSSs, complete sequence Length = 90497 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 aaatttgaacataccagctg 118 |||||||||||||||||||| Sbjct: 76678 aaatttgaacataccagctg 76659
>emb|Z95395.1|SPAC3A12 S.pombe chromosome I cosmid c3A12 Length = 37013 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 aacaaaaataaaggtgcagtacta 29 ||||||||||||||||| |||||| Sbjct: 5272 aacaaaaataaaggtgctgtacta 5249
>gb|AC158506.9| Pan troglodytes clone rp43-145f17, complete sequence Length = 155707 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 aaatttgaacataccagctg 118 |||||||||||||||||||| Sbjct: 90690 aaatttgaacataccagctg 90671
>gb|AC084197.1| Caenorhabditis elegans cosmid Y73B6BL, complete sequence Length = 216143 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 atttgaacataccagctgct 120 |||||||||||||||||||| Sbjct: 11279 atttgaacataccagctgct 11298
>gb|AC008344.2|AC008344 Drosophila melanogaster, chromosome 2R, region 56C-56D, BAC clone BACR19I21, complete sequence Length = 171981 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 ttagtaacattggatatcgatttt 199 ||||||||||||||||| |||||| Sbjct: 134420 ttagtaacattggatatggatttt 134443
>gb|AC008096.3|AC008096 Drosophila melanogaster, chromosome 2R, region 56C-56D, BAC clone BACR21D20, complete sequence Length = 176813 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 ttagtaacattggatatcgatttt 199 ||||||||||||||||| |||||| Sbjct: 122185 ttagtaacattggatatggatttt 122162
>gb|AE003796.3| Drosophila melanogaster chromosome 2R, section 54 of 73 of the complete sequence Length = 277421 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 ttagtaacattggatatcgatttt 199 ||||||||||||||||| |||||| Sbjct: 144873 ttagtaacattggatatggatttt 144896 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,590,421 Number of Sequences: 3902068 Number of extensions: 2590421 Number of successful extensions: 57225 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57194 Number of HSP's gapped (non-prelim): 31 length of query: 255 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 233 effective length of database: 17,147,199,772 effective search space: 3995297546876 effective search space used: 3995297546876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)