ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (... 42 5e-04
2BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (... 36 0.032
3LEG_ANTCR (P22031) D-galactoside-specific lectin (Sea urchin egg... 34 0.12

>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 835

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 416 CGSYSHGECSSSQALAVAQEACXXXXXXXXXXSAKNFG-DPCRGVTKSLVVEAACS 252
           CG++  G C + ++    ++ C          + +NFG DPCR V K L VEA CS
Sbjct: 780 CGNFQQGSCHAPRSYDAFKKNCVGKESCSVQVTPENFGGDPCRNVLKKLSVEAICS 835



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>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 832

 Score = 36.2 bits (82), Expect = 0.032
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = -2

Query: 419 TCGSYSHGECSSSQAL-AVAQEA----CXXXXXXXXXXSAKNFG-DPCRGVTKSLVVEAA 258
           TCGS+S G C + ++  A  QE     C          + + FG DPC G  K L VEA 
Sbjct: 771 TCGSFSEGSCHAHKSYDAFEQEGLMQNCVGQEFCSVNVAPEVFGGDPCPGTMKKLAVEAI 830

Query: 257 C 255
           C
Sbjct: 831 C 831



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>LEG_ANTCR (P22031) D-galactoside-specific lectin (Sea urchin egg lectin)|
           (SUEL)
          Length = 105

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -2

Query: 395 ECSSSQALAVAQEACXXXXXXXXXXSAKNFGDPCRGVTKSLVVEAACS 252
           +C SS +  V + +C          S   FGDPC G  K L V   CS
Sbjct: 56  KCRSSNSQQVVENSCEGKSSCTVLASNSVFGDPCPGTAKYLAVTYICS 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,221,691
Number of Sequences: 219361
Number of extensions: 1028516
Number of successful extensions: 1884
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1877
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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