ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF064560.1|AF064560 Hordeum vulgare cultivar Bomi starch bran... 507 e-141
2gb|U66376.1|TAU66376 Triticum aestivum 1,4-alpha-D-glucan 6-alph... 139 6e-30
3emb|Y11282.1|TASBA2 T.aestivum mRNA for starch branching enzyme II 131 2e-27
4gb|AF338432.1|AF338432 Triticum aestivum starch branching enzyme... 131 2e-27
5gb|AF286319.1| Triticum aestivum starch branching enzyme 2 (Sbe2... 131 2e-27
6gb|AF338431.1|AF338431 Aegilops tauschii starch branching enzyme... 123 4e-25
7emb|BX324110.10| Zebrafish DNA sequence from clone DKEY-250F19 i... 48 0.018
8gb|AC099007.2| Drosophila melanogaster clone BACR16B07, complete... 42 1.1
9ref|NM_137701.2| Drosophila melanogaster CG4030-RA (CG4030), mRNA 42 1.1
10gb|AY061312.1| Drosophila melanogaster LD23155 full length cDNA 42 1.1
11gb|AC130310.17| Homo sapiens chromosome 11, clone RP11-269A12, c... 42 1.1
12gb|AC068580.23| Homo sapiens chromosome 11, clone RP11-295K3, co... 42 1.1
13gb|AE003453.3| Drosophila melanogaster chromosome 2R, section 61... 42 1.1
14gb|AC004313.1|AC004313 Drosophila melanogaster (P1 DS02368 (D205... 42 1.1
15gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome... 40 4.3
16gb|AC147681.8| Canis Familiaris, clone XX-10A1, complete sequence 40 4.3
17gb|AC116657.3| Mus musculus BAC clone RP23-289E18 from 15, compl... 40 4.3
18emb|AL137781.18| Human DNA sequence from clone RP11-263K14 on ch... 40 4.3
19gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome ... 40 4.3
20dbj|AK088955.1| Mus musculus 2 days neonate thymus thymic cells ... 40 4.3
21gb|AC012363.6| Homo sapiens BAC clone RP11-438O12 from 2, comple... 40 4.3
22gb|AC024902.54| Homo sapiens 12 BAC RP11-684O24 (Roswell Park Ca... 40 4.3
23emb|BX649543.6| Zebrafish DNA sequence from clone DKEY-238K23 in... 40 4.3
24emb|AL773534.10| Mouse DNA sequence from clone RP23-183O12 on ch... 40 4.3 
>gb|AF064560.1|AF064560 Hordeum vulgare cultivar Bomi starch branching enzyme IIa (sbeIIa)
            mRNA, nuclear gene encoding plastid protein, complete cds
          Length = 2554

 Score =  507 bits (256), Expect = e-141
 Identities = 262/264 (99%)
 Strand = Plus / Minus

                                                                        
Query: 65   tgtccaagttgaagcgcacgggcaattattagtttatatgtacataaacaaccgggaatg 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2528 tgtccaagttgaagcgcacgggcaattattagtttatatgtacataaacaaccgggaatg 2469

                                                                        
Query: 125  tgagagataggatggttcagtgcagcactacaaaatgtcacccaggcccgtccattttct 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2468 tgagagataggatggttcagtgcagcactacaaaatgtcacccaggcccgtccattttct 2409

                                                                        
Query: 185  ttcgcaggtcacttgaaaacgagggctcgccagcaagctacctatccatctgatcctcct 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2408 ttcgcaggtcacttgaaaacgagggctcgccagcaagctacctatccatctgatcctcct 2349

                                                                        
Query: 245  agcatctggggaagaggcacgatcccctcccaatcacgggggttagaacagtctcggacc 304
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2348 agcatctggggaagaggcacgatcccctcccaatcacggcggttagaacagtctcggacc 2289

                                    
Query: 305  gttgcccgtcgtttcgctcacaat 328
            ||||||||||| ||||||||||||
Sbjct: 2288 gttgcccgtcgcttcgctcacaat 2265
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>gb|U66376.1|TAU66376 Triticum aestivum 1,4-alpha-D-glucan
            6-alpha-D-(1,4-alpha-D-glucanotransferase mRNA, complete
            cds
          Length = 2853

 Score =  139 bits (70), Expect = 6e-30
 Identities = 137/156 (87%), Gaps = 10/156 (6%)
 Strand = Plus / Minus

                                                                        
Query: 38   tcacgggctaacctattaaaatatttat--gtccaagttgaagcgcacgggcaattatta 95
            ||||||| |||||||||| |||||||||  || || ||||||||||||||||||||||||
Sbjct: 2829 tcacgggataacctattagaatatttatatgttcatgttgaagcgcacgggcaattatta 2770

                                                                        
Query: 96   gtttatatgtacataaacaaccgggaatgtgagagat---aggatggttcagtgcagcac 152
            | ||||||||||| |||||||||||||||||  ||||   |||| |||||||||||||||
Sbjct: 2769 g-ttatatgtacaaaaacaaccgggaatgtgcaagataggaggagggttcagtgcagcac 2711

                                                
Query: 153  tacaaaatgtcacccaggcccgtccattttctttcg 188
             |||||    ||||||||||||||||||||||||||
Sbjct: 2710 aacaaa----cacccaggcccgtccattttctttcg 2679



 Score =  123 bits (62), Expect = 4e-25
 Identities = 107/122 (87%)
 Strand = Plus / Minus

                                                                        
Query: 204  cgagggctcgccagcaagctacctatccatctgatcctcctagcatctggggaagaggca 263
            |||| |||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 2680 cgagcgctcaccaacaagctacctatccatctgctcctcctggcatctggggaagaggca 2621

                                                                        
Query: 264  cgatcccctcccaatcacgggggttagaacagtctcggaccgttgcccgtcgtttcgctc 323
            ||||||||||||| ||| || | || || ||| ||||  ||||||||||||| |||||||
Sbjct: 2620 cgatcccctcccagtcatggcgcttggagcagcctcgcgccgttgcccgtcgcttcgctc 2561

              
Query: 324  ac 325
            ||
Sbjct: 2560 ac 2559
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>emb|Y11282.1|TASBA2 T.aestivum mRNA for starch branching enzyme II
          Length = 2970

 Score =  131 bits (66), Expect = 2e-27
 Identities = 108/122 (88%)
 Strand = Plus / Minus

                                                                        
Query: 204  cgagggctcgccagcaagctacctatccatctgatcctcctagcatctggggaagaggca 263
            |||| |||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 2800 cgagcgctcaccaacaagctacctatccatctgctcctcctggcatctggggaagaggca 2741

                                                                        
Query: 264  cgatcccctcccaatcacgggggttagaacagtctcggaccgttgcccgtcgtttcgctc 323
            ||||||||||||| ||| || | ||||| ||| ||||  ||||||||||||| |||||||
Sbjct: 2740 cgatcccctcccagtcatggcgcttagagcagcctcgcgccgttgcccgtcgcttcgctc 2681

              
Query: 324  ac 325
            ||
Sbjct: 2680 ac 2679



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 99/113 (87%), Gaps = 6/113 (5%)
 Strand = Plus / Minus

                                                                        
Query: 77   agcgcacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagatagga 136
            |||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||
Sbjct: 2906 agcgcacgggcaattattagtt-atatgtacaaaaacaaccgggaatgtgcaagatagga 2848

                                                                 
Query: 137  tg-gttcagtgcagcactacaaaatgtcacccaggcccgtccattttctttcg 188
             | |   |||||||||| |||||    ||||||||||||||||||||||||||
Sbjct: 2847 ggagggtagtgcagcacgacaaa----cacccaggcccgtccattttctttcg 2799
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>gb|AF338432.1|AF338432 Triticum aestivum starch branching enzyme IIa variant mRNA, complete
            cds
          Length = 2726

 Score =  131 bits (66), Expect = 2e-27
 Identities = 108/122 (88%)
 Strand = Plus / Minus

                                                                        
Query: 204  cgagggctcgccagcaagctacctatccatctgatcctcctagcatctggggaagaggca 263
            |||| |||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 2608 cgagcgctcaccaacaagctacctatccatctgctcctcctggcatctggggaagaggca 2549

                                                                        
Query: 264  cgatcccctcccaatcacgggggttagaacagtctcggaccgttgcccgtcgtttcgctc 323
            ||||||||||||| ||| || | ||||| ||| ||||  ||||||||||||| |||||||
Sbjct: 2548 cgatcccctcccagtcatggcgcttagagcagcctcgcgccgttgcccgtcgcttcgctc 2489

              
Query: 324  ac 325
            ||
Sbjct: 2488 ac 2487



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 99/113 (87%), Gaps = 6/113 (5%)
 Strand = Plus / Minus

                                                                        
Query: 77   agcgcacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagatagga 136
            |||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||
Sbjct: 2714 agcgcacgggcaattattagtt-atatgtacaaaaacaaccgggaatgtgcaagatagga 2656

                                                                 
Query: 137  tg-gttcagtgcagcactacaaaatgtcacccaggcccgtccattttctttcg 188
             | |   |||||||||| |||||    ||||||||||||||||||||||||||
Sbjct: 2655 ggagggtagtgcagcacgacaaa----cacccaggcccgtccattttctttcg 2607
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>gb|AF286319.1| Triticum aestivum starch branching enzyme 2 (Sbe2) mRNA, complete cds
          Length = 2970

 Score =  131 bits (66), Expect = 2e-27
 Identities = 108/122 (88%)
 Strand = Plus / Minus

                                                                        
Query: 204  cgagggctcgccagcaagctacctatccatctgatcctcctagcatctggggaagaggca 263
            |||| |||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 2798 cgagcgctcaccaacaagctacctatccatctgctcctcctggcatctggggaagaggca 2739

                                                                        
Query: 264  cgatcccctcccaatcacgggggttagaacagtctcggaccgttgcccgtcgtttcgctc 323
            ||||||||||||| ||| || | ||||| ||| ||||  ||||||||||||| |||||||
Sbjct: 2738 cgatcccctcccagtcatggcgcttagagcagcctcgcgccgttgcccgtcgcttcgctc 2679

              
Query: 324  ac 325
            ||
Sbjct: 2678 ac 2677



 Score =  101 bits (51), Expect = 1e-18
 Identities = 144/169 (85%), Gaps = 12/169 (7%)
 Strand = Plus / Minus

                                                                        
Query: 26   taggcaggtgaatcacgggctaacctattaa---aatatttat--gtccaagttgaagcg 80
            ||||||||| ||||||||| ||||||||||    |||||||||  || || ||||| |||
Sbjct: 2959 taggcaggtaaatcacgggataacctattattagaatatttatatgttcacgttga-gcg 2901

                                                                        
Query: 81   cacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagataggatg-g 139
            |||||||||||||||||| ||||||||| |||||||||||||||||  |||||||| | |
Sbjct: 2900 cacgggcaattattagtt-atatgtacaaaaacaaccgggaatgtgcaagataggaggag 2842

                                                             
Query: 140  ttcagtgcagcactacaaaatgtcacccaggcccgtccattttctttcg 188
               |||||||||| |||||    ||||||||||||||||||||||||||
Sbjct: 2841 ggtagtgcagcacgacaaa----cacccaggcccgtccattttctttcg 2797
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>gb|AF338431.1|AF338431 Aegilops tauschii starch branching enzyme IIa gene, complete cds
          Length = 11475

 Score =  123 bits (62), Expect = 4e-25
 Identities = 107/122 (87%)
 Strand = Plus / Minus

                                                                         
Query: 204   cgagggctcgccagcaagctacctatccatctgatcctcctagcatctggggaagaggca 263
             |||| |||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 11353 cgagcgctcaccaacaagctacctatccatctgctcctcctggcatctggggaagaggca 11294

                                                                         
Query: 264   cgatcccctcccaatcacgggggttagaacagtctcggaccgttgcccgtcgtttcgctc 323
             ||||||||||||| ||| || | || || ||| ||||  ||||||||||||| |||||||
Sbjct: 11293 cgatcccctcccagtcatggcgcttggagcagcctcgcgccgttgcccgtcgcttcgctc 11234

               
Query: 324   ac 325
             ||
Sbjct: 11233 ac 11232



 Score =  111 bits (56), Expect = 1e-21
 Identities = 102/115 (88%), Gaps = 8/115 (6%)
 Strand = Plus / Minus

                                                                         
Query: 77    agcgcacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagat---a 133
             |||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||   |
Sbjct: 11461 agcgcacgggcaattattagtt-atatgtacaaaaacaaccgggaatgtgcaagatagga 11403

                                                                    
Query: 134   ggatggttcagtgcagcactacaaaatgtcacccaggcccgtccattttctttcg 188
             ||| ||||||||||||||| |||||    ||||||||||||||||||||||||||
Sbjct: 11402 ggagggttcagtgcagcacaacaaa----cacccaggcccgtccattttctttcg 11352
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>emb|BX324110.10| Zebrafish DNA sequence from clone DKEY-250F19 in linkage group 3,
             complete sequence
          Length = 103014

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 52    attaaaatatttatgtccaagttg 75
             ||||||||||||||||||||||||
Sbjct: 44261 attaaaatatttatgtccaagttg 44238
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>gb|AC099007.2| Drosophila melanogaster clone BACR16B07, complete sequence
          Length = 172393

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 90    ttattagtttatatgtacata 110
             |||||||||||||||||||||
Sbjct: 86061 ttattagtttatatgtacata 86041
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>ref|NM_137701.2| Drosophila melanogaster CG4030-RA (CG4030), mRNA
          Length = 2320

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 90  ttattagtttatatgtacata 110
           |||||||||||||||||||||
Sbjct: 52  ttattagtttatatgtacata 32
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>gb|AY061312.1| Drosophila melanogaster LD23155 full length cDNA
          Length = 2311

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 90  ttattagtttatatgtacata 110
           |||||||||||||||||||||
Sbjct: 27  ttattagtttatatgtacata 7
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>gb|AC130310.17| Homo sapiens chromosome 11, clone RP11-269A12, complete sequence
          Length = 155537

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     agttctgctaaaatataggca 31
              |||||||||||||||||||||
Sbjct: 120783 agttctgctaaaatataggca 120763
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>gb|AC068580.23| Homo sapiens chromosome 11, clone RP11-295K3, complete sequence
          Length = 120298

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 11     agttctgctaaaatataggca 31
              |||||||||||||||||||||
Sbjct: 101217 agttctgctaaaatataggca 101237
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>gb|AE003453.3| Drosophila melanogaster chromosome 2R, section 61 of 73 of the
            complete sequence
          Length = 305143

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 90   ttattagtttatatgtacata 110
            |||||||||||||||||||||
Sbjct: 2700 ttattagtttatatgtacata 2720
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>gb|AC004313.1|AC004313 Drosophila melanogaster (P1 DS02368 (D205)) DNA sequence, complete
             sequence
          Length = 80993

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 90    ttattagtttatatgtacata 110
             |||||||||||||||||||||
Sbjct: 49971 ttattagtttatatgtacata 49951
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>gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome 7, complete
            sequence
          Length = 190553

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   gtttatatgtacataaacaa 115
            ||||||||||||||||||||
Sbjct: 6326 gtttatatgtacataaacaa 6345
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>gb|AC147681.8| Canis Familiaris, clone XX-10A1, complete sequence
          Length = 160031

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    gaatgtgagagataggatgg 139
              ||||||||||||||||||||
Sbjct: 102898 gaatgtgagagataggatgg 102917
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>gb|AC116657.3| Mus musculus BAC clone RP23-289E18 from 15, complete sequence
          Length = 184557

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    aatatttatgtccaagttga 76
             ||||||||||||||||||||
Sbjct: 62839 aatatttatgtccaagttga 62820
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>emb|AL137781.18| Human DNA sequence from clone RP11-263K14 on chromosome 13q22.3-31.3,
             complete sequence
          Length = 147978

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aaataaagttctgctaaaat 24
             ||||||||||||||||||||
Sbjct: 25273 aaataaagttctgctaaaat 25254
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>gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome 7, complete sequence
          Length = 265770

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    gtttatatgtacataaacaa 115
             ||||||||||||||||||||
Sbjct: 60879 gtttatatgtacataaacaa 60860
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>dbj|AK088955.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430033K04
            product:unclassifiable, full insert sequence
          Length = 3339

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    aaataaagttctgctaaaat 24
            ||||||||||||||||||||
Sbjct: 3124 aaataaagttctgctaaaat 3143
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>gb|AC012363.6| Homo sapiens BAC clone RP11-438O12 from 2, complete sequence
          Length = 217346

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     agttctgctaaaatataggc 30
              ||||||||||||||||||||
Sbjct: 118238 agttctgctaaaatataggc 118219
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>gb|AC024902.54| Homo sapiens 12 BAC RP11-684O24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 167113

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    attaaaatatttatgtccaa 71
             ||||||||||||||||||||
Sbjct: 89958 attaaaatatttatgtccaa 89939
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>emb|BX649543.6| Zebrafish DNA sequence from clone DKEY-238K23 in linkage group 20,
             complete sequence
          Length = 42367

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   tcagtgcagcactacaaaat 160
             ||||||||||||||||||||
Sbjct: 28172 tcagtgcagcactacaaaat 28191
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>emb|AL773534.10| Mouse DNA sequence from clone RP23-183O12 on chromosome 2, complete
              sequence
          Length = 216706

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      aaataaagttctgctaaaat 24
              ||||||||||||||||||||
Sbjct: 130186 aaataaagttctgctaaaat 130205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,352,217
Number of Sequences: 3902068
Number of extensions: 3352217
Number of successful extensions: 64590
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64541
Number of HSP's gapped (non-prelim): 40
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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