>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1|
          Length = 2042

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +2

Query: 191  RCCKKTSTASNPAPHGMTMSHATPKRSPRGLAYRS 295
            R   KT  AS P P   T    TPK + RG A+RS
Sbjct: 1347 RSSVKTPAASEPLPSASTDQPITPKPTSRGRAHRS 1381

>RAC2_CAVPO (O88931) Ras-related C3 botulinum toxin substrate 2 precursor|
           (p21-Rac2)
          Length = 192

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +2

Query: 26  LLCFQAIH-SSFEPVH--WYPIDDHNCPRSEL 112
           L+CF  +  +S+E VH  WYP   H+CP + +
Sbjct: 79  LICFSLVSPASYENVHANWYPKVRHHCPSTPI 110

>RAC1_DROME (P40792) Ras-related protein Rac1|
          Length = 192

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 16/75 (21%)
 Frame = +2

Query: 26  LLCFQAIH-SSFEPVH--WYPIDDHNCP-------------RSELPVSRFLLD*MLETIS 157
           L+CF  ++ +SFE V   WYP   H+CP             R +      L D  L  I+
Sbjct: 79  LICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPIT 138

Query: 158 YPPDLLLCNPMRCCK 202
           YP  L +   +   K
Sbjct: 139 YPQGLAMAKEIGAVK 153

>CO8A_MOUSE (Q8K182) Complement component C8 alpha chain precursor (Complement|
           component 8 alpha subunit)
          Length = 587

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 224 GCWPCWSSCSSALDCRGGDQ 165
           G W CWSS S   +CRGG Q
Sbjct: 543 GHWSCWSSWS---ECRGGSQ 559

>RAC3_MOUSE (P60764) Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)|
          Length = 192

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
 Frame = +2

Query: 26  LLCFQAIH-SSFEPVH--WYPIDDHNCP-------------RSELPVSRFLLD*MLETIS 157
           L+CF  +  +SFE V   WYP   H+CP             R +      L D  L  I+
Sbjct: 79  LICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPIT 138

Query: 158 YPPDLLLCNPMRCCK 202
           YP  L +   +   K
Sbjct: 139 YPQGLAMAREIGSVK 153

>RAC3_HUMAN (P60763) Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)|
          Length = 192

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
 Frame = +2

Query: 26  LLCFQAIH-SSFEPVH--WYPIDDHNCP-------------RSELPVSRFLLD*MLETIS 157
           L+CF  +  +SFE V   WYP   H+CP             R +      L D  L  I+
Sbjct: 79  LICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPIT 138

Query: 158 YPPDLLLCNPMRCCK 202
           YP  L +   +   K
Sbjct: 139 YPQGLAMAREIGSVK 153

>KCNAS_DROME (P08510) Potassium voltage-gated channel protein Shaker|
          Length = 655

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 62  PVHWYPID-DHN-CPRSELPVSRFLLD*MLETISYPPDLLLCNPMR 193
           P H+ PI  DH+ C R  + VS    +  L T++  PD LL +P R
Sbjct: 83  PQHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDPAR 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,108,226
Number of Sequences: 219361
Number of extensions: 819408
Number of successful extensions: 2354
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2348
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)