ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl43a02 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 59.7 bits (143), Expect = 3e-09 Identities = 27/32 (84%), Positives = 28/32 (87%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 KFPYMLLYPNTSDH G A GLTA+GIPNSI I Sbjct: 831 KFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 55.5 bits (132), Expect = 5e-08 Identities = 25/32 (78%), Positives = 28/32 (87%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 +FPYMLLYPNTSD TG A G+TA+GIPNSI I Sbjct: 835 EFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 53.1 bits (126), Expect = 2e-07 Identities = 23/31 (74%), Positives = 27/31 (87%) Frame = -3 Query: 408 FPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 FPY L++PNTSD+ G AEG+TARGIPNSI I Sbjct: 833 FPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 51.2 bits (121), Expect = 9e-07 Identities = 24/31 (77%), Positives = 25/31 (80%) Frame = -3 Query: 408 FPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 FPY LLYPNTSD G A GL+ARGIPNSI I Sbjct: 840 FPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 47.4 bits (111), Expect = 1e-05 Identities = 24/33 (72%), Positives = 26/33 (78%), Gaps = 1/33 (3%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQ-AEGLTARGIPNSIPI 316 K PYMLLYPNTSD T + +GLTA GIPNSI I Sbjct: 845 KMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 37.0 bits (84), Expect = 0.018 Identities = 19/32 (59%), Positives = 21/32 (65%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 K PY LLYP++ EGLT RGIPNSI I Sbjct: 841 KMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 36.2 bits (82), Expect = 0.031 Identities = 19/32 (59%), Positives = 21/32 (65%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 K PY LLYP++ EGLT RGIPNSI I Sbjct: 828 KMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 35.0 bits (79), Expect = 0.068 Identities = 18/32 (56%), Positives = 21/32 (65%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 + PY LL+PN+ EGLT RGIPNSI I Sbjct: 841 QLPYTLLHPNS-------EGLTCRGIPNSISI 865
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 34.7 bits (78), Expect = 0.089 Identities = 18/32 (56%), Positives = 21/32 (65%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 + PY LLYP++ EGLT RGIPNSI I Sbjct: 814 QLPYTLLYPSSE------EGLTFRGIPNSISI 839
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 34.7 bits (78), Expect = 0.089 Identities = 18/32 (56%), Positives = 21/32 (65%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 + PY LLYP++ EGLT RGIPNSI I Sbjct: 836 EMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 33.5 bits (75), Expect = 0.20 Identities = 18/32 (56%), Positives = 19/32 (59%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 K PY +L P D EGLT RGIPNSI I Sbjct: 836 KMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 32.7 bits (73), Expect = 0.34 Identities = 17/32 (53%), Positives = 21/32 (65%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 + PY LL+P++ EGLT RGIPNSI I Sbjct: 839 QLPYTLLHPSSK------EGLTFRGIPNSISI 864
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 31.6 bits (70), Expect = 0.76 Identities = 17/32 (53%), Positives = 20/32 (62%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 + PY LL P++ EGLT RGIPNSI I Sbjct: 832 QMPYTLLLPSSK------EGLTFRGIPNSISI 857
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 31.6 bits (70), Expect = 0.76 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -3 Query: 405 PYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 PY LL+P + EGLT +GIPNS+ I Sbjct: 836 PYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 31.6 bits (70), Expect = 0.76 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 K PY LL+P++ G+T RGIPNS+ I Sbjct: 834 KMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 30.0 bits (66), Expect = 2.2 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 8/75 (10%) Frame = -3 Query: 399 MLLYPNTSDHTGQAEGLTARGIPNSIPI*SEHVRRRDLMLLC---YPCLLTPEL-----A 244 M PN + HT Q E I +P+ RR LLC +P L TP++ A Sbjct: 55 MTALPNLAGHTNQLEAELQ--IAKLVPLIESGCSRRARFLLCSSLFP-LCTPDVPRPVAA 111 Query: 243 CVCVCDRELCRCMNN 199 C +C+ CM N Sbjct: 112 CKLLCETVRGECMEN 126
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 29.6 bits (65), Expect = 2.9 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 + PY LL H EGLT +GIPNSI I Sbjct: 839 QLPYTLL------HRSSEEGLTFKGIPNSISI 864
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 29.6 bits (65), Expect = 2.9 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -2 Query: 406 PIHAALPKHLRPHGTGRGAHRQGHPE 329 P H A P L H +G HRQGHPE Sbjct: 235 PTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 29.6 bits (65), Expect = 2.9 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -2 Query: 406 PIHAALPKHLRPHGTGRGAHRQGHPE 329 P H A P L H +G HRQGHPE Sbjct: 235 PTHPA-PPGLHHHHKHKGQHRQGHPE 259
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 29.3 bits (64), Expect = 3.7 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 405 PYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 PY LL+P + GLT +GIPNS+ I Sbjct: 838 PYTLLFPTSEG------GLTGKGIPNSVSI 861
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 29.3 bits (64), Expect = 3.7 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 405 PYMLLYPNTSDHTGQAEGLTARGIPNSIPI 316 PY LL+P + GLT +GIPNS+ I Sbjct: 837 PYTLLFPTSEG------GLTGKGIPNSVSI 860
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 28.9 bits (63), Expect = 4.9 Identities = 19/39 (48%), Positives = 22/39 (56%) Frame = +1 Query: 295 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWEL 411 T DVL DG VR G +G+SR+V V EQH EL Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDEL 475
>AFF3_HUMAN (P51826) AF4/FMR2 family member 3 (LAF-4 protein) (Lymphoid nuclear| protein related to AF4) Length = 1227 Score = 28.1 bits (61), Expect = 8.3 Identities = 17/50 (34%), Positives = 21/50 (42%) Frame = -3 Query: 411 KFPYMLLYPNTSDHTGQAEGLTARGIPNSIPI*SEHVRRRDLMLLCYPCL 262 K PY L+Y T + A L PN+ P + L LCY CL Sbjct: 1026 KSPYYLMYSETVELIRYAMRLKTHSGPNATP------EDKQLAALCYRCL 1069
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -3 Query: 243 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 106 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -3 Query: 243 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 106 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,093,409 Number of Sequences: 219361 Number of extensions: 1380930 Number of successful extensions: 3512 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3375 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3500 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
