ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 313 2e-82
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 145 1e-31
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 80 6e-12
4emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 80 6e-12
5gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 80 6e-12
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
7dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
8ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 74 4e-10
9gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full... 74 4e-10
10gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-... 68 2e-08
11gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds 68 2e-08
12gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRN... 66 1e-07
13gb|AY720897.2| Triticum aestivum lipoxygenase gene, partial sequ... 62 2e-06
14ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA 60 6e-06
15gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 60 6e-06
16gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds 60 6e-06
17gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds 60 6e-06
18gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 60 6e-06
19gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence 58 2e-05
20gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 ge... 58 2e-05
21gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 ge... 58 2e-05
22gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 ge... 58 2e-05
23gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 ge... 58 2e-05
24gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 ge... 58 2e-05
25gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 ge... 58 2e-05
26gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 ge... 58 2e-05
27gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 ge... 58 2e-05
28gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 ge... 58 2e-05
29gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 ge... 58 2e-05
30gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 ge... 58 2e-05
31gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 ge... 58 2e-05
32gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 ge... 58 2e-05
33gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 geno... 58 2e-05
34gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, co... 54 4e-04
35ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
36ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
37gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual posit... 52 0.001
38gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complet... 52 0.001
39dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
40dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
41dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
42dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
43gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.090
44dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.090
45emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 1.4
46emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 1.4
47dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
48gb|AC022448.7| Homo sapiens chromosome 5 clone RP11-78G3, comple... 42 1.4
49dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
50ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.5
51gb|AF287229.1| Tetrahymena pyriformis heat shock protein 90 (HSP... 40 5.5
52gb|AY111869.1| Zea mays CL452_-8 mRNA sequence 40 5.5
53gb|AY103567.1| Zea mays PCO116252 mRNA sequence 40 5.5
54gb|AF151114.1|AF151114 Tetrahymena thermophila strain B2086 hsp8... 40 5.5 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  313 bits (158), Expect = 2e-82
 Identities = 167/170 (98%)
 Strand = Plus / Minus

                                                                        
Query: 244  agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 303
            ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                                                        
Query: 304  gtgctcagatcagatgggtatgctgttcgggatgcccctggcggtgagcccctcggcctg 363
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 2608

                                                              
Query: 364  tcccgtgtggtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2607 tcccgtgtggtcggaggtgtttgggtagagcagcatgtatgggaacttgg 2558



 Score =  270 bits (136), Expect = 3e-69
 Identities = 149/153 (97%), Gaps = 4/153 (2%)
 Strand = Plus / Minus

                                                                        
Query: 79   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 139  agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 194
            |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                             
Query: 195  cttaattattcatgcaccggcacaactctctgt 227
            |||||||||||||||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaactctctgt 2744
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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA
           sequence
          Length = 1129

 Score =  145 bits (73), Expect = 1e-31
 Identities = 94/101 (93%)
 Strand = Plus / Minus

                                                                       
Query: 313 tcagatgggtatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 372
           ||||||||  |||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 906 tcagatggagatgctgttggggatgcccctggccgtgagcccctcggcctggcccgtgtg 847

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 846 gtcggaggtgttggggtagagcagcatgtaggggaacttgg 806



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 72   catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 121
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 154  ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 198
            ||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 88/104 (84%)
 Strand = Plus / Minus

                                                                            
Query: 310      agatcagatgggtatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 369
                |||||||||||  |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 30026452 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 30026393

                                                            
Query: 370      gtggtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
                | |||||||||||||||||||||||||| |||| ||||| ||||
Sbjct: 30026392 gaggtcggaggtgtttgggtagagcagcgtgtaggggaaattgg 30026349



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 373      gtcggaggtgtttgggtagagcagcatgtatgggaact 410
                |||||||||||| ||||| |||||||||||||||||||
Sbjct: 27803047 gtcggaggtgttggggtaaagcagcatgtatgggaact 27803010



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                          
Query: 313      tcagatgggtatgctgttcgggatgcccctggcggtgagccc 354
                ||||||||  |||||||| ||||||||| |||||||||||||
Sbjct: 27821686 tcagatggagatgctgttggggatgcccatggcggtgagccc 27821645
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>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 88/104 (84%)
 Strand = Plus / Minus

                                                                        
Query: 310  agatcagatgggtatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 369
            |||||||||||  |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 2698 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 2639

                                                        
Query: 370  gtggtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
            | |||||||||||||||||||||||||| |||| ||||| ||||
Sbjct: 2638 gaggtcggaggtgtttgggtagagcagcgtgtaggggaaattgg 2595
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 88/104 (84%)
 Strand = Plus / Plus

                                                                         
Query: 310   agatcagatgggtatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 369
             |||||||||||  |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 81299 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 81358

                                                         
Query: 370   gtggtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
             | |||||||||||||||||||||||||| |||| ||||| ||||
Sbjct: 81359 gaggtcggaggtgtttgggtagagcagcgtgtaggggaaattgg 81402
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 88/104 (84%)
 Strand = Plus / Minus

                                                                            
Query: 310      agatcagatgggtatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 369
                |||||||||||  |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 30117874 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 30117815

                                                            
Query: 370      gtggtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
                | |||||||||||||||||||||||||| |||| ||||| ||||
Sbjct: 30117814 gaggtcggaggtgtttgggtagagcagcgtgtaggggaaattgg 30117771



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 373      gtcggaggtgtttgggtagagcagcatgtatgggaact 410
                |||||||||||| ||||| |||||||||||||||||||
Sbjct: 27894371 gtcggaggtgttggggtaaagcagcatgtatgggaact 27894334



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                          
Query: 313      tcagatgggtatgctgttcgggatgcccctggcggtgagccc 354
                ||||||||  |||||||| ||||||||| |||||||||||||
Sbjct: 27913010 tcagatggagatgctgttggggatgcccatggcggtgagccc 27912969
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>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 88/104 (84%)
 Strand = Plus / Minus

                                                                        
Query: 310  agatcagatgggtatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 369
            |||||||||||  |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 2731 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 2672

                                                        
Query: 370  gtggtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
            | |||||||||||||||||||||||||| |||| ||||| ||||
Sbjct: 2671 gaggtcggaggtgtttgggtagagcagcgtgtaggggaaattgg 2628
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>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                        
Query: 313  tcagatgggtatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 372
            ||||||||  |||||||| |||||||||||||||| ||| ||  | || |  ||| || |
Sbjct: 2613 tcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgag 2554

                                                     
Query: 373  gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
            ||||||||||||||||||||||||| |||| ||||| ||||
Sbjct: 2553 gtcggaggtgtttgggtagagcagcgtgtaggggaaattgg 2513
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>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA
           sequence
          Length = 1020

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 313 tcagatgggtatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 372
           ||||||||  |||||||| ||||||||| | |||||||||||  ||||    ||| ||||
Sbjct: 753 tcagatggagatgctgttggggatgcccttagcggtgagcccggcggcggcgcccttgtg 694

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
            ||||||||||| |||||||||| |||||| ||||||||||
Sbjct: 693 atcggaggtgttggggtagagcaacatgtaggggaacttgg 653
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>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds
          Length = 2267

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                        
Query: 313  tcagatgggtatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 372
            ||||||||  |||||||| ||||||||| |||| ||||||||  ||||    ||  ||||
Sbjct: 2064 tcagatggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtg 2005

                                                  
Query: 373  gtcggaggtgtttgggtagagcagcatgtatgggaact 410
            ||| |||||||| ||||||||||||||||| |||||||
Sbjct: 2004 gtcagaggtgttggggtagagcagcatgtaggggaact 1967
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>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds
          Length = 2818

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                        
Query: 310  agatcagatgggtatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 369
            |||| ||||||  |||||||| ||||||||| ||||||| |||||  | ||    ||| |
Sbjct: 2660 agattagatggagatgctgttggggatgcccttggcggtaagcccggcagcggcgccctt 2601

                                                      
Query: 370  gtggtcggaggtgtttgggtagagcagcatgtatgggaactt 411
            ||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 2600 gtggtcggaggtgttggggtagagcagcatgtagggaaactt 2559
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>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds
          Length = 1331

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                        
Query: 323  atgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcggaggtg 382
            |||||||| ||||||||| ||||||| |||||  | ||    ||| ||||||||||||||
Sbjct: 1076 atgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcggaggtg 1017

                                         
Query: 383  tttgggtagagcagcatgtatgggaactt 411
            || ||||||||||||||||| || |||||
Sbjct: 1016 ttggggtagagcagcatgtagggaaactt 988
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>gb|AY720897.2| Triticum aestivum lipoxygenase gene, partial sequence
          Length = 934

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                       
Query: 323 atgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcggaggtg 382
           |||||||| ||||||||| |||||||||| ||  ||||    ||| |||||||  |||||
Sbjct: 1   atgctgttggggatgcccttggcggtgaggccggcggcggcacccttgtggtcttaggtg 60

                                          
Query: 383 tttgggtagagcagcatgtatgggaacttgg 413
           || ||||||||||||||||| |||| |||||
Sbjct: 61  ttagggtagagcagcatgtaggggagcttgg 91
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>ref|XM_469409.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2601

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 373  gtcggaggtgtttgggtagagcagcatgtatgggaact 410
            |||||||||||| ||||| |||||||||||||||||||
Sbjct: 2541 gtcggaggtgttggggtaaagcagcatgtatgggaact 2504
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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 373   gtcggaggtgtttgggtagagcagcatgtatgggaact 410
             |||||||||||| ||||| |||||||||||||||||||
Sbjct: 47177 gtcggaggtgttggggtaaagcagcatgtatgggaact 47140



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 313   tcagatgggtatgctgttcgggatgcccctggcggtgagccc 354
             ||||||||  |||||||| ||||||||| |||||||||||||
Sbjct: 65816 tcagatggagatgctgttggggatgcccatggcggtgagccc 65775
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>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds
          Length = 5013

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                        
Query: 313  tcagatgggtatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 372
            ||||||||  |||||||| ||||||||| |||| ||||||||  ||||    ||  ||||
Sbjct: 4662 tcagatggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtg 4603

                                                  
Query: 373  gtcggaggtgtttgggtagagcagcatgtatgggaact 410
            ||| |||||||| || |||||||||||||| |||||||
Sbjct: 4602 gtcagaggtgttgggatagagcagcatgtaggggaact 4565
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>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds
          Length = 2595

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                        
Query: 313  tcagatgggtatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 372
            ||||||||  |||||||| ||||||||| |||| ||||||||  ||||    ||  ||||
Sbjct: 2595 tcagatggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtg 2536

                                                  
Query: 373  gtcggaggtgtttgggtagagcagcatgtatgggaact 410
            ||| |||||||| || |||||||||||||| |||||||
Sbjct: 2535 gtcagaggtgttgggatagagcagcatgtaggggaact 2498
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>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 373   gtcggaggtgtttgggtagagcagcatgtatgggaact 410
             |||||||||||| ||||| |||||||||||||||||||
Sbjct: 10846 gtcggaggtgttggggtaaagcagcatgtatgggaact 10883
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>gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence
          Length = 810

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 736 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 696
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>gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 genomic sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 373 gtcggaggtgtttgggtagagcagcatgtatgggaacttgg 413
           |||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttgg 691
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>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds
          Length = 3003

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 305  tgctcagatcagatgggtatgctgttcgggatgcccctggcggtgagcccc 355
            ||||||| ||||||||  | |||||| ||||||||| ||||||||||||||
Sbjct: 2772 tgctcagctcagatggagacgctgttggggatgcccatggcggtgagcccc 2722
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>ref|XM_469412.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2686

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 313  tcagatgggtatgctgttcgggatgcccctggcggtgagccc 354
            ||||||||  |||||||| ||||||||| |||||||||||||
Sbjct: 2446 tcagatggagatgctgttggggatgcccatggcggtgagccc 2405
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>ref|XM_469411.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3165

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 313  tcagatgggtatgctgttcgggatgcccctggcggtgagccc 354
            ||||||||  |||||||| ||||||||| |||||||||||||
Sbjct: 2925 tcagatggagatgctgttggggatgcccatggcggtgagccc 2884
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>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity
            lipoxygenase mRNA, complete cds
          Length = 3154

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 313  tcagatgggtatgctgttcgggatgcccctggcggtgagccc 354
            ||||||||  |||||||| ||||||||| |||||||||||||
Sbjct: 2919 tcagatggagatgctgttggggatgcccatggcggtgagccc 2878
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>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds
          Length = 2845

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 373  gtcggaggtgtttgggtagagcagcatgtatgggaact 410
            |||||||||||| |||||||||||| |||| |||||||
Sbjct: 2562 gtcggaggtgttggggtagagcagcgtgtaggggaact 2525
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>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full
            insert sequence
          Length = 1560

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 313  tcagatgggtatgctgttcgggatgcccctggcggtgagccc 354
            ||||||||  |||||||| ||||||||| |||||||||||||
Sbjct: 1332 tcagatggagatgctgttggggatgcccatggcggtgagccc 1291
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>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full
            insert sequence
          Length = 2851

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 313  tcagatgggtatgctgttcgggatgcccctggcggtgagccc 354
            ||||||||  |||||||| ||||||||| |||||||||||||
Sbjct: 2597 tcagatggagatgctgttggggatgcccatggcggtgagccc 2556
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>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full
            insert sequence
          Length = 3167

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 313  tcagatgggtatgctgttcgggatgcccctggcggtgagccc 354
            ||||||||  |||||||| ||||||||| |||||||||||||
Sbjct: 2927 tcagatggagatgctgttggggatgcccatggcggtgagccc 2886
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>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full
            insert sequence
          Length = 1726

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 313  tcagatgggtatgctgttcgggatgcccctggcggtgagccc 354
            ||||||||  |||||||| ||||||||| |||||||||||||
Sbjct: 1497 tcagatggagatgctgttggggatgcccatggcggtgagccc 1456
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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 186    ccttattgccttaattattcatg 208
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 186   ccttattgccttaattattcatg 208
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 186      ccttattgccttaattattcatg 208
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 186      ccttattgccttaattattcatg 208
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060
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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    aaacaagggattttttctgca 113
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585
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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 90    gcaaaacaagggattttttct 110
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 25       ttgccaagaagaagaaaaaca 45
                |||||||||||||||||||||
Sbjct: 35171480 ttgccaagaagaagaaaaaca 35171500
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>gb|AC022448.7| Homo sapiens chromosome 5 clone RP11-78G3, complete sequence
          Length = 111000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    gtttgccaagaagaagaaaaa 43
             |||||||||||||||||||||
Sbjct: 26186 gtttgccaagaagaagaaaaa 26206
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>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0031D02
          Length = 183692

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    ttgccaagaagaagaaaaaca 45
             |||||||||||||||||||||
Sbjct: 50564 ttgccaagaagaagaaaaaca 50584
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>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   ggagggaacatcacaccatc 75
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438
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>gb|AF287229.1| Tetrahymena pyriformis heat shock protein 90 (HSP81) gene, partial
           cds
          Length = 2283

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 28  ccaagaagaagaaaaacaac 47
           ||||||||||||||||||||
Sbjct: 979 ccaagaagaagaaaaacaac 998
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>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence
          Length = 568

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 323 atgctgttcgggatgcccctggcggtgagcccctcg 358
           |||||||| || |||||| |||| ||||||||||||
Sbjct: 357 atgctgttgggaatgcccatggcagtgagcccctcg 322
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>gb|AY103567.1| Zea mays PCO116252 mRNA sequence
          Length = 3135

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 323  atgctgttcgggatgcccctggcggtgagcccctcggcct 362
            |||||||| || |||||| |||| || |||||||||||||
Sbjct: 2890 atgctgttgggaatgcccatggcagtaagcccctcggcct 2851
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>gb|AF151114.1|AF151114 Tetrahymena thermophila strain B2086 hsp82 heat shock protein
           (HSP82) mRNA, partial cds
          Length = 2243

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 28  ccaagaagaagaaaaacaac 47
           ||||||||||||||||||||
Sbjct: 974 ccaagaagaagaaaaacaac 993


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,853,284
Number of Sequences: 3902068
Number of extensions: 3853284
Number of successful extensions: 96789
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96533
Number of HSP's gapped (non-prelim): 254
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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