Clone Name | rbastl43a01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SC6A4_DROME (P51905) Sodium-dependent serotonin transporter (5HT... | 30 | 1.3 | 2 | CRLF2_HUMAN (Q9HC73) Cytokine receptor-like factor 2 precursor (... | 29 | 3.6 | 3 | Y450_BUCAP (Q8K999) Hypothetical transport protein BUsg450 | 28 | 8.1 |
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>SC6A4_DROME (P51905) Sodium-dependent serotonin transporter (5HT transporter)| (5HTT) (Cocaine-sensitive serotonin transporter) (dSERT1) Length = 622 Score = 30.4 bits (67), Expect = 1.3 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = -2 Query: 190 LVAFILVSSLDG--FGPF*LYRFCLLAGPTLSAVSLFVVLVEQFGYCWFY 47 L+AFI + +L +G L F + GP L+ LFVV VE G WFY Sbjct: 460 LLAFIFLCALPTMTYGGVVLVNFLNVYGPGLAI--LFVVFVEAAGVFWFY 507
>CRLF2_HUMAN (Q9HC73) Cytokine receptor-like factor 2 precursor (Cytokine| receptor-like 2) (CRL2) (IL-XR) (Thymic stromal lymphopoietin protein receptor) (TSLPR) Length = 371 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 250 WRRSTKRQGCASSYVHALPRLVAFILVSSL 161 W+R R CA + P+L FIL+SSL Sbjct: 209 WQRGEIRDACAETPTPPKPKLSKFILISSL 238
>Y450_BUCAP (Q8K999) Hypothetical transport protein BUsg450| Length = 391 Score = 27.7 bits (60), Expect = 8.1 Identities = 9/27 (33%), Positives = 19/27 (70%) Frame = -2 Query: 82 VLVEQFGYCWFYYMLAIFFLYSLLIAF 2 ++ E FG+ +++ A+F ++S+LI F Sbjct: 157 IIAENFGFFSIFWISAVFSIFSILIVF 183 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,409,222 Number of Sequences: 219361 Number of extensions: 619868 Number of successful extensions: 1598 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1578 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1598 length of database: 80,573,946 effective HSP length: 60 effective length of database: 67,412,286 effective search space used: 1617894864 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)