ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SC6A4_DROME (P51905) Sodium-dependent serotonin transporter (5HT... 30 1.3
2CRLF2_HUMAN (Q9HC73) Cytokine receptor-like factor 2 precursor (... 29 3.6
3Y450_BUCAP (Q8K999) Hypothetical transport protein BUsg450 28 8.1

>SC6A4_DROME (P51905) Sodium-dependent serotonin transporter (5HT transporter)|
           (5HTT) (Cocaine-sensitive serotonin transporter)
           (dSERT1)
          Length = 622

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 190 LVAFILVSSLDG--FGPF*LYRFCLLAGPTLSAVSLFVVLVEQFGYCWFY 47
           L+AFI + +L    +G   L  F  + GP L+   LFVV VE  G  WFY
Sbjct: 460 LLAFIFLCALPTMTYGGVVLVNFLNVYGPGLAI--LFVVFVEAAGVFWFY 507



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>CRLF2_HUMAN (Q9HC73) Cytokine receptor-like factor 2 precursor (Cytokine|
           receptor-like 2) (CRL2) (IL-XR) (Thymic stromal
           lymphopoietin protein receptor) (TSLPR)
          Length = 371

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 250 WRRSTKRQGCASSYVHALPRLVAFILVSSL 161
           W+R   R  CA +     P+L  FIL+SSL
Sbjct: 209 WQRGEIRDACAETPTPPKPKLSKFILISSL 238



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>Y450_BUCAP (Q8K999) Hypothetical transport protein BUsg450|
          Length = 391

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 82  VLVEQFGYCWFYYMLAIFFLYSLLIAF 2
           ++ E FG+   +++ A+F ++S+LI F
Sbjct: 157 IIAENFGFFSIFWISAVFSIFSILIVF 183


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,409,222
Number of Sequences: 219361
Number of extensions: 619868
Number of successful extensions: 1598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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