ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl42h12 |
|---|---|
| Clone Library Name | barley_pub |
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 35.4 bits (80), Expect = 0.033 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -2 Query: 393 DVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGIS-GPKEVAMKLAVRSDDPEVSDRI 229 D V HT LSGVF G VL + + + +AM + ++S++P V+D + Sbjct: 810 DRVPEGKTQHTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMNIIIKSNEPLVADLV 865
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 30.8 bits (68), Expect = 0.82 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = -2 Query: 393 DVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDD 250 D V N SH+ L+G+F G +LVR ++ V M++ VRS + Sbjct: 814 DKVPENKNSHSLYLAGIFRGGYDLLVRSRLALA--DGVTMQVTVRSKE 859
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -2 Query: 393 DVVQNNSRSHTCLLSGVFIGNVKVLVR 313 D V +N +HT LL+GVF G +LVR Sbjct: 817 DKVPDNKNTHTLLLAGVFRGGHDILVR 843
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -2 Query: 393 DVVQNNSRSHTCLLSGVFIGNVKVLVR 313 D V +N +HT LL+GVF G +LVR Sbjct: 817 DKVPDNKNTHTLLLAGVFRGGHDILVR 843
>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 348 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 241 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 348 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 241 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 348 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 241 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 348 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 241 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 348 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 241 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 348 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 241 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = -2 Query: 393 DVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDD 250 D V N SH+ L+GV+ G +LVR ++ V M++ VRS + Sbjct: 814 DKVPENKNSHSLYLAGVYRGGYDLLVRSRLALA--DGVTMQVTVRSKE 859
>SLS1_YEAST (P42900) Sigma-like sequence protein 1, mitochondrial precursor| (Protein SLS1) Length = 643 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/44 (43%), Positives = 26/44 (59%) Frame = +2 Query: 209 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPM 340 P +IS LS+T G S +ASF ++ F PLI ++K LPM Sbjct: 386 PSDSISQSLSITLGHSLQSASF-SSIFQPLIHKSFISKLLNLPM 428
>NUGC_SOYBN (P31174) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 158 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -2 Query: 348 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 241 G + +V L RL +GI P+EV +K+ V +P + Sbjct: 62 GGLLASVYHLTRLEYGIDQPEEVCIKIFVARKNPRI 97
>REXO3_YARLI (Q6CFE7) RNA exonuclease 3 (EC 3.1.-.-)| Length = 757 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = +2 Query: 209 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDLEL 379 PF T+S SL + +S T++ TS P+ TKT + P +TP L+L Sbjct: 466 PFRTVSTSESLDTSTSTSTSTSATTS----APSAKSTKTASRPASTPTKSLTSSLDL 518
>RPOB_EUGGR (P23579) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1082 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +2 Query: 221 ISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDLE 376 +S +L T+ S+LT + FGP N TK +NT + +VC +E Sbjct: 365 LSQLLDDTNSLSELTHKRKLSPFGPNGLNKERTKLDVREINTSQYGRVCPIE 416
>T2R46_PAPHA (Q646G0) Taste receptor type 2 member 46 (T2R46)| Length = 309 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -3 Query: 164 LAFHLVKAQGISINYSIWLCVSWFSRWNPTVVAASFL 54 LAFH V+ + S Y++W+ + FS W T ++ +L Sbjct: 73 LAFHSVEVR--STAYNVWVVTNHFSNWLSTSLSMFYL 107
>MMP1_MYCLE (P46841) Major membrane protein I (MMP-I) (35 kDa antigen)| Length = 307 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 218 TISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDL 373 TIS +L + + SDL +S P+D +T+ L + T + RQ C+L Sbjct: 94 TISTLLDIHTRVSDLYSS----------PHDQITQQLRLTIETIKERQECEL 135
>TRPM6_MOUSE (Q8CIR4) Transient receptor potential cation channel subfamily M| member 6 (EC 2.7.11.1) (Channel kinase 2) (Melastatin-related TRP cation channel 6) Length = 2028 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +3 Query: 147 HQMESQNNKKVNQKTLAGSFSHLQQFH 227 H E Q +++ Q+T A SH++Q H Sbjct: 1318 HVREEQEEREMEQRTTASGISHVRQAH 1344
>SYS_STAES (Q8CU95) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 428 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = -2 Query: 291 PKEVAMKLAVRSDDPEVSDRIHEI 220 P++V K+ +R DDP+V D++ E+ Sbjct: 11 PEKVKSKIELRGDDPKVVDQVLEL 34
>SYS_STAEQ (Q5HK07) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 428 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = -2 Query: 291 PKEVAMKLAVRSDDPEVSDRIHEI 220 P++V K+ +R DDP+V D++ E+ Sbjct: 11 PEKVKSKIELRGDDPKVVDQVLEL 34
>CDPK1_PLAYO (Q7RAH3) Calcium-dependent protein kinase 1 (EC 2.7.11.1)| Length = 534 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +3 Query: 159 SQNNKKVNQKTLAGSFSHLQQFHGS 233 + N K +QKTL G+ S++++F GS Sbjct: 327 ANNINKSDQKTLCGALSNMRKFEGS 351
>CDPK1_PLAFK (P62343) Calcium-dependent protein kinase 1 (EC 2.7.11.1) (PfCPK)| (PfCDPK1) Length = 523 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +3 Query: 159 SQNNKKVNQKTLAGSFSHLQQFHGS 233 + N K +QKTL G+ S++++F GS Sbjct: 328 ANNINKSDQKTLCGALSNMRKFEGS 352
>CDPK1_PLAF7 (P62344) Calcium-dependent protein kinase 1 (EC 2.7.11.1)| Length = 523 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +3 Query: 159 SQNNKKVNQKTLAGSFSHLQQFHGS 233 + N K +QKTL G+ S++++F GS Sbjct: 328 ANNINKSDQKTLCGALSNMRKFEGS 352 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,054,573 Number of Sequences: 219361 Number of extensions: 862923 Number of successful extensions: 1919 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1897 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1919 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
