>PARC_RICCN (Q92JH0) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase|
           IV subunit A)
          Length = 738

 Score = 32.3 bits (72), Expect = 0.52
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -1

Query: 428 KMEQITIVKWIVEIQKLVIILESLSNGAYAHWGI*SHFLDSMQQRFGLTSACWTRRFSSG 249
           K+E+  I+     +QK   ILE + N     W I    + ++Q +FGL +    RR S  
Sbjct: 430 KLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFE 489

Query: 248 VFTLSS 231
             TL++
Sbjct: 490 EVTLTN 495

>L_NDVB (P11205) Large structural protein (Protein L) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2204

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -2

Query: 181  CNSPLIPHHHGLEDDL*KQAVITFLTNFEMSHPRI 77
            C++PL+   H  +++  ++A+  FL N E+ HPR+
Sbjct: 1003 CSNPLLSGVHTEDNEAEEKALAEFLLNQEVIHPRV 1037

>YD57_SCHPO (Q10310) Hypothetical protein C6C3.07 in chromosome I|
          Length = 515

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +2

Query: 65  TKQENSWVRHLKISQKCDYSLLLQVVFKTMMVRNQRRVTTL 187
           +KQEN +V+H+K S +    L +   +K + +  ++++ +L
Sbjct: 70  SKQENIYVKHIKSSNEAKTELEIFNCYKEISISKEKKINSL 110

>YQGP_BACSU (P54493) Hypothetical protein yqgP|
          Length = 507

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -2

Query: 370 YWRA*AMVPMHIGVSKVIFSTVC--NRDLVSHRHVGRGGFRREYSPSHLESCILRFVQTD 197
           +WR    + +HIG++ + F+T+   +      R  G G F   Y  + +   I  FV + 
Sbjct: 222 WWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSP 281

Query: 196 EPVKGCNSPL 167
            P  G +  +
Sbjct: 282 YPSAGASGAI 291

>VE4_HPV31 (P17384) Probable protein E4|
          Length = 102

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 19/66 (28%), Positives = 25/66 (37%)
 Frame = +3

Query: 183 PFTGSSVCTNRRMQLSR*EGEYSRRKPPRPTCRCETKSLLHTVEKMTLDTPMCIGTIAQA 362
           P+    VC  RR  LS  E   S   P  PT  CE              TP  + T+  +
Sbjct: 37  PWAPVKVCGGRRRLLSDQEQSQSTETPTTPTSCCEA-------------TPWTVSTVGLS 83

Query: 363 LQYYNQ 380
           +Q + Q
Sbjct: 84  VQLHAQ 89

>CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel alpha-1I subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.3)
            (Ca(v)3.3)
          Length = 2223

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
 Frame = +3

Query: 243  EYSRRKP---PRPTCRCETKSLLHTV-----EKMTLDTPMCIGTIAQALQYYNQLLYFHN 398
            E  RRK    P     C T+ L+H++       + +   +C+  +  +L++YNQ      
Sbjct: 1458 EKKRRKAQRLPYYATYCHTRLLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLET 1517

Query: 399  PLDYC 413
             L YC
Sbjct: 1518 ALKYC 1522


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,302,315
Number of Sequences: 219361
Number of extensions: 1414365
Number of successful extensions: 3433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3433
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)