ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 9e-36
2dbj|AK058460.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 9e-36
3gb|AY017415.1| Oryza sativa subsp. japonica nuclear cap-binding ... 151 2e-33
4dbj|AK058969.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 90 7e-15
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-15
7gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome... 90 7e-15
8gb|AY111920.1| Zea mays CL17088_1 mRNA sequence 74 4e-10
9gb|AY903394.1| Memecylon thouarsianum clone 3.7 glyceraldehyde 3... 52 0.002
10gb|AY903393.1| Memecylon thouarsianum clone 3.6 glyceraldehyde 3... 52 0.002
11gb|AY903391.1| Memecylon roseum clone 2.18 glyceraldehyde 3-phos... 52 0.002
12gb|AY903390.1| Memecylon roseum clone 2.17 glyceraldehyde 3-phos... 52 0.002
13gb|AY903389.1| Memecylon lateriflorum clone 1.8 glyceraldehyde 3... 52 0.002
14gb|AY903388.1| Memecylon lateriflorum clone 1.6 glyceraldehyde 3... 52 0.002
15gb|AY903383.1| Lijndenia procteri clone 5.4 glyceraldehyde 3-pho... 52 0.002
16gb|AY903381.1| Lijndenia danguyana clone 2.2 glyceraldehyde 3-ph... 52 0.002
17gb|AY903396.1| Mouriri sagotiana clone 6.1 glyceraldehyde 3-phos... 50 0.006
18gb|AY903382.1| Lijndenia procteri clone 5.3 glyceraldehyde 3-pho... 48 0.024
19gb|AY903380.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.... 48 0.024
20gb|AY903379.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.... 48 0.024
21gb|AY903378.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.... 48 0.024
22gb|AY903410.1| Warneckea sansibarica clone 1.3 glyceraldehyde 3-... 44 0.38
23gb|AY903409.1| Warneckea sansibarica clone 1.2 glyceraldehyde 3-... 44 0.38
24gb|AY903408.1| Warneckea sansibarica clone 1.1 glyceraldehyde 3-... 44 0.38
25gb|AY903407.1| Warneckea sansibarica clone 3.5 glyceraldehyde 3-... 44 0.38
26gb|AY903406.1| Warneckea membranifolia clone 1.3 glyceraldehyde ... 44 0.38
27gb|AY903405.1| Warneckea membranifolia clone 1.1 glyceraldehyde ... 44 0.38
28gb|AY903402.1| Warneckea fascicularis var. mangrovensis clone 2.... 44 0.38
29gb|AY903401.1| Warneckea fascicularis var. mangrovensis clone 2.... 44 0.38
30gb|AY903400.1| Warneckea fascicularis var. mangrovensis clone 2.... 44 0.38
31gb|AY903398.1| Spathandra blakeoides clone 5.3 glyceraldehyde 3-... 44 0.38
32gb|AY903397.1| Spathandra blakeoides clone 5.2 glyceraldehyde 3-... 44 0.38
33gb|AY903392.1| Memecylon thouarsianum clone 3.5 glyceraldehyde 3... 44 0.38
34gb|AC124333.13| Mus musculus chromosome 1, clone RP24-511E9, com... 42 1.5
35gb|AY903395.1| Mouriri dumetosa clone 5.5 glyceraldehyde 3-phosp... 42 1.5
36gb|AC102248.19| Mus musculus chromosome 18, clone RP24-158I9, co... 40 5.9
37emb|AL589725.6| Human DNA sequence from clone RP11-280I21 on chr... 40 5.9
38gb|AY903399.1| Votomita guianensis clone 3.1 glyceraldehyde 3-ph... 40 5.9
39gb|BC019151.1| Mus musculus transmembrane protein 116, mRNA (cDN... 40 5.9
40gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 5.9
41ref|NM_029912.1| Mus musculus transmembrane protein 116 (Tmem116... 40 5.9
42dbj|AK039773.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 40 5.9
43dbj|AK015791.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.9
44dbj|AK015103.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.9
45dbj|AK021099.1| Mus musculus adult male corpus striatum cDNA, RI... 40 5.9
46gb|AC102178.21| Mus musculus chromosome 7, clone RP24-70C24, com... 40 5.9
47dbj|AP003304.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.9
48emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in... 40 5.9 
>dbj|AK102852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110I07, full
            insert sequence
          Length = 2992

 Score =  159 bits (80), Expect = 9e-36
 Identities = 146/168 (86%)
 Strand = Plus / Minus

                                                                        
Query: 201  gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 260
            ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 2636 gtctgcacaaaccggagaaagcagctttccggataagagggtgaatattcccaacgaaaa 2577

                                                                        
Query: 261  cctcctcgtccaacatgccgatgtgagaccaaatctctgttgcatactgtcgagaaaatg 320
             |||||  ||||||||| | || || ||||| ||||| || ||||| || |||||||| |
Sbjct: 2576 tctcctgatccaacatggcaatatgggaccagatctcagtagcatattgacgagaaaacg 2517

                                                            
Query: 321  actttagataccccaatgtgcataggcaccattgctcaagctctccaa 368
            |||| ||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 2516 acttgagatagcccaatgtgcagagacaccattgctcaagctctccaa 2469



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 404  tgactattgttatctgctccattttcattgtcta 437
            ||||||| ||||||| ||||||||||||||||||
Sbjct: 2433 tgactatcgttatctcctccattttcattgtcta 2400
to top
>dbj|AK058460.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-A01, full
           insert sequence
          Length = 1182

 Score =  159 bits (80), Expect = 9e-36
 Identities = 146/168 (86%)
 Strand = Plus / Minus

                                                                       
Query: 201 gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 260
           ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 824 gtctgcacaaaccggagaaagcagctttccggataagagggtgaatattcccaacgaaaa 765

                                                                       
Query: 261 cctcctcgtccaacatgccgatgtgagaccaaatctctgttgcatactgtcgagaaaatg 320
            |||||  ||||||||| | || || ||||| ||||| || ||||| || |||||||| |
Sbjct: 764 tctcctgatccaacatggcaatatgggaccagatctcagtagcatattgacgagaaaacg 705

                                                           
Query: 321 actttagataccccaatgtgcataggcaccattgctcaagctctccaa 368
           |||| ||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 704 acttgagatagcccaatgtgcagagacaccattgctcaagctctccaa 657



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 404 tgactattgttatctgctccattttcattgtcta 437
           ||||||| ||||||| ||||||||||||||||||
Sbjct: 621 tgactatcgttatctcctccattttcattgtcta 588
to top
>gb|AY017415.1| Oryza sativa subsp. japonica nuclear cap-binding protein CBP80 mRNA,
            complete cds
          Length = 3009

 Score =  151 bits (76), Expect = 2e-33
 Identities = 146/168 (86%), Gaps = 1/168 (0%)
 Strand = Plus / Minus

                                                                        
Query: 201  gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 260
            ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 2652 gtctgcacaaaccggagaa-gcagctttccggataagagggtgaatattcccaacgaaaa 2594

                                                                        
Query: 261  cctcctcgtccaacatgccgatgtgagaccaaatctctgttgcatactgtcgagaaaatg 320
             |||||  ||||||||| | || || ||||| ||||| || ||||| || |||||||| |
Sbjct: 2593 tctcctgatccaacatggcaatatgggaccagatctcagtagcatattgacgagaaaacg 2534

                                                            
Query: 321  actttagataccccaatgtgcataggcaccattgctcaagctctccaa 368
            |||| ||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 2533 acttgagatagcccaatgtgcagagacaccattgctcaagctctccaa 2486



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 404  tgactattgttatctgctccattttcattgtcta 437
            ||||||| ||||||| ||||||||||||||||||
Sbjct: 2450 tgactatcgttatctcctccattttcattgtcta 2417
to top
>dbj|AK058969.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-C11, full
            insert sequence
          Length = 1566

 Score =  151 bits (76), Expect = 2e-33
 Identities = 145/168 (86%)
 Strand = Plus / Minus

                                                                        
Query: 201  gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 260
            ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 1333 gtctgcacaaaccggagaaagcagctttccggataagagggtgaatattcccaacgaaaa 1274

                                                                        
Query: 261  cctcctcgtccaacatgccgatgtgagaccaaatctctgttgcatactgtcgagaaaatg 320
             |||||  ||||||||| | || || ||||| ||||| || ||||| || |||||||| |
Sbjct: 1273 tctcctgatccaacatggcaatatgggaccagatctcagtagcatattgacgagaaaacg 1214

                                                            
Query: 321  actttagataccccaatgtgcataggcaccattgctcaagctctccaa 368
            |||  ||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 1213 actcgagatagcccaatgtgcagagacaccattgctcaagctctccaa 1166



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 404  tgactattgttatctgctccattttcattgtcta 437
            ||||||| ||||||| ||||||||||||||||||
Sbjct: 1130 tgactatcgttatctcctccattttcattgtcta 1097
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                            
Query: 201      gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 260
                ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 12962271 gtctgcacaaaccggagaaagcagctttccggataagagggtgaatattcccaacgaaaa 12962212

                                 
Query: 261      cctcctcgtccaacatg 277
                 |||||  |||||||||
Sbjct: 12962211 tctcctgatccaacatg 12962195



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                            
Query: 302      gcatactgtcgagaaaatgactttagataccccaatgtgcataggcaccattgctcaagc 361
                ||||| || |||||||| ||||| ||||| ||||||||||| || |||||||||||||||
Sbjct: 12961606 gcatattgacgagaaaacgacttgagatagcccaatgtgcagagacaccattgctcaagc 12961547

                       
Query: 362      tctccaa 368
                |||||||
Sbjct: 12961546 tctccaa 12961540



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 407      ctattgttatctgctccattttcattgtcta 437
                |||| ||||||| ||||||||||||||||||
Sbjct: 12961100 ctatcgttatctcctccattttcattgtcta 12961070
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                            
Query: 201      gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 260
                ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 12959046 gtctgcacaaaccggagaaagcagctttccggataagagggtgaatattcccaacgaaaa 12958987

                                 
Query: 261      cctcctcgtccaacatg 277
                 |||||  |||||||||
Sbjct: 12958986 tctcctgatccaacatg 12958970



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                            
Query: 302      gcatactgtcgagaaaatgactttagataccccaatgtgcataggcaccattgctcaagc 361
                ||||| || |||||||| ||||| ||||| ||||||||||| || |||||||||||||||
Sbjct: 12958381 gcatattgacgagaaaacgacttgagatagcccaatgtgcagagacaccattgctcaagc 12958322

                       
Query: 362      tctccaa 368
                |||||||
Sbjct: 12958321 tctccaa 12958315



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 407      ctattgttatctgctccattttcattgtcta 437
                |||| ||||||| ||||||||||||||||||
Sbjct: 12957875 ctatcgttatctcctccattttcattgtcta 12957845
to top
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0006D11, complete sequence
          Length = 176637

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                         
Query: 201   gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 260
             ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 39969 gtctgcacaaaccggagaaagcagctttccggataagagggtgaatattcccaacgaaaa 39910

                              
Query: 261   cctcctcgtccaacatg 277
              |||||  |||||||||
Sbjct: 39909 tctcctgatccaacatg 39893



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                         
Query: 302   gcatactgtcgagaaaatgactttagataccccaatgtgcataggcaccattgctcaagc 361
             ||||| || |||||||| ||||| ||||| ||||||||||| || |||||||||||||||
Sbjct: 39304 gcatattgacgagaaaacgacttgagatagcccaatgtgcagagacaccattgctcaagc 39245

                    
Query: 362   tctccaa 368
             |||||||
Sbjct: 39244 tctccaa 39238



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 407   ctattgttatctgctccattttcattgtcta 437
             |||| ||||||| ||||||||||||||||||
Sbjct: 38798 ctatcgttatctcctccattttcattgtcta 38768
to top
>gb|AY111920.1| Zea mays CL17088_1 mRNA sequence
          Length = 604

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                       
Query: 287 gaccaaatctctgttgcatactgtcgagaaaatgactttagataccccaatgtgcatagg 346
           |||||||||||  ||||||| || || ||||||||||| ||||| |||| ||| || || 
Sbjct: 319 gaccaaatctcacttgcatattggcgggaaaatgacttgagataacccagtgtacagaga 260

                                        
Query: 347 caccattgctcaagctctccaatattata 375
           ||||| |||||||||||||||| ||||||
Sbjct: 259 caccactgctcaagctctccaacattata 231



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 406 actattgttatctgctccattttcattgtc 435
           |||||| |||||||||||||||||||||||
Sbjct: 200 actattattatctgctccattttcattgtc 171
to top
>gb|AY903394.1| Memecylon thouarsianum clone 3.7 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 843

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521
to top
>gb|AY903393.1| Memecylon thouarsianum clone 3.6 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 844

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521
to top
>gb|AY903391.1| Memecylon roseum clone 2.18 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 844

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521
to top
>gb|AY903390.1| Memecylon roseum clone 2.17 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 844

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521
to top
>gb|AY903389.1| Memecylon lateriflorum clone 1.8 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 847

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521
to top
>gb|AY903388.1| Memecylon lateriflorum clone 1.6 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 847

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521
to top
>gb|AY903383.1| Lijndenia procteri clone 5.4 glyceraldehyde 3-phosphate
           dehydrogenase-like (GapC) gene, complete sequence
          Length = 870

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||||||||||||||
Sbjct: 570 aagagtgaccataggcaaatgaaact 545
to top
>gb|AY903381.1| Lijndenia danguyana clone 2.2 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 872

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||||||||||||||
Sbjct: 571 aagagtgaccataggcaaatgaaact 546
to top
>gb|AY903396.1| Mouriri sagotiana clone 6.1 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 870

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 12  agagtgaccataggcaaatgaaact 36
           |||||||||||||||||||||||||
Sbjct: 568 agagtgaccataggcaaatgaaact 544
to top
>gb|AY903382.1| Lijndenia procteri clone 5.3 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 871

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 11  aagagtgaccataggcaaatgaaa 34
           ||||||||||||||||||||||||
Sbjct: 570 aagagtgaccataggcaaatgaaa 547
to top
>gb|AY903380.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.3 glyceraldehyde
           3-phosphate dehydrogenase (GapC) gene, partial cds
          Length = 871

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 11  aagagtgaccataggcaaatgaaa 34
           ||||||||||||||||||||||||
Sbjct: 570 aagagtgaccataggcaaatgaaa 547
to top
>gb|AY903379.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.2 glyceraldehyde
           3-phosphate dehydrogenase (GapC) gene, partial cds
          Length = 870

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 11  aagagtgaccataggcaaatgaaa 34
           ||||||||||||||||||||||||
Sbjct: 569 aagagtgaccataggcaaatgaaa 546
to top
>gb|AY903378.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.1 glyceraldehyde
           3-phosphate dehydrogenase (GapC) gene, partial cds
          Length = 871

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 11  aagagtgaccataggcaaatgaaa 34
           ||||||||||||||||||||||||
Sbjct: 570 aagagtgaccataggcaaatgaaa 547
to top
>gb|AY903410.1| Warneckea sansibarica clone 1.3 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 861

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           |||||||||||||||| |||||||||
Sbjct: 570 aagagtgaccataggcgaatgaaact 545
to top
>gb|AY903409.1| Warneckea sansibarica clone 1.2 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 861

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           |||||||||||||||| |||||||||
Sbjct: 570 aagagtgaccataggcgaatgaaact 545
to top
>gb|AY903408.1| Warneckea sansibarica clone 1.1 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 861

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           |||||||||||||||| |||||||||
Sbjct: 570 aagagtgaccataggctaatgaaact 545
to top
>gb|AY903407.1| Warneckea sansibarica clone 3.5 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 861

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           |||||||||||||||| |||||||||
Sbjct: 570 aagagtgaccataggcgaatgaaact 545
to top
>gb|AY903406.1| Warneckea membranifolia clone 1.3 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 876

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||| ||||||||||
Sbjct: 571 aagagtgaccataggaaaatgaaact 546
to top
>gb|AY903405.1| Warneckea membranifolia clone 1.1 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 876

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||| ||||||||||
Sbjct: 571 aagagtgaccataggaaaatgaaact 546
to top
>gb|AY903402.1| Warneckea fascicularis var. mangrovensis clone 2.5 glyceraldehyde
           3-phosphate dehydrogenase (GapC) gene, partial cds
          Length = 875

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||| ||||||||||
Sbjct: 571 aagagtgaccataggaaaatgaaact 546
to top
>gb|AY903401.1| Warneckea fascicularis var. mangrovensis clone 2.2 glyceraldehyde
           3-phosphate dehydrogenase-like (GapC) gene, complete
           sequence
          Length = 876

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||| ||||||||||
Sbjct: 571 aagagtgaccataggaaaatgaaact 546
to top
>gb|AY903400.1| Warneckea fascicularis var. mangrovensis clone 2.1 glyceraldehyde
           3-phosphate dehydrogenase-like (GapC) gene, complete
           sequence
          Length = 874

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||| ||||||||||
Sbjct: 570 aagagtgaccataggaaaatgaaact 545
to top
>gb|AY903398.1| Spathandra blakeoides clone 5.3 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 848

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           ||||||||||||||| ||||||||||
Sbjct: 547 aagagtgaccataggtaaatgaaact 522
to top
>gb|AY903397.1| Spathandra blakeoides clone 5.2 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 848

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  aagagtgaccataggcaaatgaaact 36
           |||||||||| |||||||||||||||
Sbjct: 547 aagagtgaccgtaggcaaatgaaact 522
to top
>gb|AY903392.1| Memecylon thouarsianum clone 3.5 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 843

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 11  aagagtgaccataggcaaatga 32
           ||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatga 525
to top
>gb|AC124333.13| Mus musculus chromosome 1, clone RP24-511E9, complete sequence
          Length = 185857

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   tcaaaaatgtgattacagctt 126
             |||||||||||||||||||||
Sbjct: 96316 tcaaaaatgtgattacagctt 96296
to top
>gb|AY903395.1| Mouriri dumetosa clone 5.5 glyceraldehyde 3-phosphate dehydrogenase
           (GapC) gene, partial cds
          Length = 867

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 11  aagagtgaccataggcaaatgaaac 35
           |||||||||||| ||||||||||||
Sbjct: 567 aagagtgaccatgggcaaatgaaac 543
to top
>gb|AC102248.19| Mus musculus chromosome 18, clone RP24-158I9, complete sequence
          Length = 206000

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   caatccacttgactattgtt 414
             ||||||||||||||||||||
Sbjct: 76344 caatccacttgactattgtt 76325
to top
>emb|AL589725.6| Human DNA sequence from clone RP11-280I21 on chromosome 6, complete
            sequence
          Length = 30634

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 409  attgttatctgctccattttcatt 432
            ||||||||||||| ||||||||||
Sbjct: 7839 attgttatctgctgcattttcatt 7862
to top
>gb|AY903399.1| Votomita guianensis clone 3.1 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 872

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 16  tgaccataggcaaatgaaac 35
           ||||||||||||||||||||
Sbjct: 567 tgaccataggcaaatgaaac 548
to top
>gb|BC019151.1| Mus musculus transmembrane protein 116, mRNA (cDNA clone MGC:29263
           IMAGE:5064772), complete cds
          Length = 1268

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 146 aagaccatgatggtgaggaa 165
           ||||||||||||||||||||
Sbjct: 606 aagaccatgatggtgaggaa 587
to top
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     cgacgaaaacctcctcgtcc 271
               ||||||||||||||||||||
Sbjct: 1017318 cgacgaaaacctcctcgtcc 1017299
to top
>ref|NM_029912.1| Mus musculus transmembrane protein 116 (Tmem116), mRNA
          Length = 1268

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 146 aagaccatgatggtgaggaa 165
           ||||||||||||||||||||
Sbjct: 606 aagaccatgatggtgaggaa 587
to top
>dbj|AK039773.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched
            library, clone:A330106A04 product:RIKEN cDNA C030022K24
            gene, full insert sequence
          Length = 2221

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 146  aagaccatgatggtgaggaa 165
            ||||||||||||||||||||
Sbjct: 1160 aagaccatgatggtgaggaa 1141
to top
>dbj|AK015791.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930513P12 product:RIKEN cDNA 4930513P12
           gene, full insert sequence
          Length = 1185

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 146 aagaccatgatggtgaggaa 165
           ||||||||||||||||||||
Sbjct: 674 aagaccatgatggtgaggaa 655
to top
>dbj|AK015103.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930406A18 product:hypothetical protein,
           full insert sequence
          Length = 1248

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 146 aagaccatgatggtgaggaa 165
           ||||||||||||||||||||
Sbjct: 866 aagaccatgatggtgaggaa 847
to top
>dbj|AK021099.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length
           enriched library, clone:C030022K24 product:weakly
           similar to HYPOTHETICAL 40.1 KDA PROTEIN (FRAGMENT)
           [Homo sapiens], full insert sequence
          Length = 1296

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 146 aagaccatgatggtgaggaa 165
           ||||||||||||||||||||
Sbjct: 655 aagaccatgatggtgaggaa 636
to top
>gb|AC102178.21| Mus musculus chromosome 7, clone RP24-70C24, complete sequence
          Length = 190370

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   gagaaaatgactttagatac 331
             ||||||||||||||||||||
Sbjct: 74652 gagaaaatgactttagatac 74633
to top
>dbj|AP003304.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-104B12, complete
             sequences
          Length = 182218

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   gatggtgaggaatcaaaggc 173
             ||||||||||||||||||||
Sbjct: 62150 gatggtgaggaatcaaaggc 62169
to top
>emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in linkage group 17,
              complete sequence
          Length = 205685

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    gcaccattgctcaagctctc 365
              ||||||||||||||||||||
Sbjct: 191454 gcaccattgctcaagctctc 191473


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,245,652
Number of Sequences: 3902068
Number of extensions: 4245652
Number of successful extensions: 72229
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72115
Number of HSP's gapped (non-prelim): 113
length of query: 437
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 415
effective length of database: 17,147,199,772
effective search space: 7116087905380
effective search space used: 7116087905380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top