>VL96_IRV1 (P22856) L96 protein|
          Length = 867

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
 Frame = -1

Query: 237 GRLRPQGPVPWAKSVRPMCRDRPPRSSLPNGRWAESFADDLNTRRGIVSGRVALLPRSTE 58
           G   P    P + SVRP      PRS  P+ R     A   +    + S   ++ P+S  
Sbjct: 469 GETPPSSVRPKSPSVRPKSPSVRPRSKSPSVRPKSPSARPRSKSPSVRSKSPSVRPKSPS 528

Query: 57  IQPHVARIRP---SPILKNK 7
           ++P    +RP   SP ++ K
Sbjct: 529 VRPKSPSVRPRSKSPSVRPK 548

>RTN4R_MOUSE (Q99PI8) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 32  RIRATWGWISVDRGSKATLPLTMPRRVFKSSAKDSAHRPL-GRELRGGRSRHIGRTDL 202
           R R  W W+   RGS + +P  +P+R+     K  A   L G  +  G  R I  + L
Sbjct: 267 RARPLWAWLQKFRGSSSEVPCNLPQRLADRDLKRLAASDLEGCAVASGPFRPIQTSQL 324

>RTN4R_MACFA (Q9N0E3) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 32  RIRATWGWISVDRGSKATLPLTMPRRV 112
           R R  W W+   RGS + +P ++P+R+
Sbjct: 267 RARPLWAWLQKFRGSSSEVPCSLPQRL 293

>RTN4R_HUMAN (Q9BZR6) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 32  RIRATWGWISVDRGSKATLPLTMPRRV 112
           R R  W W+   RGS + +P ++P+R+
Sbjct: 267 RARPLWAWLQKFRGSSSEVPCSLPQRL 293

>RTN4R_RAT (Q99M75) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 32  RIRATWGWISVDRGSKATLPLTMPRRV 112
           R R  W W+   RGS + +P  +P+R+
Sbjct: 267 RARPLWAWLQKFRGSSSEVPCNLPQRL 293

>CSKI2_MOUSE (Q8VHK1) Caskin-2|
          Length = 1201

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 24/75 (32%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
 Frame = -2

Query: 224  PKGPCHGLSRSGRCAVIGRLEAPFPTGGGLNPLQTT*IRDGAL*VAEWPCCHDPLRSSPM 45
            PK   H LSR G        EA  P G  L    T   R G   +A       P R +P 
Sbjct: 793  PKRRSHSLSRPGPAEGEAEGEAEGPVGSALGSYATLTRRPGRSTLARTSPSLTPTRGTPR 852

Query: 44   SHGFV-------PPP 21
            S  F        PPP
Sbjct: 853  SQSFALRARRKGPPP 867

>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA2) (SNF2-alpha)
           (SWI/SNF-related matrix associated actin dependent
           regulator of chromatin subfamily A member 2) (hBRM)
          Length = 1586

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 130 GFSPPPVGKGASRRPITAHRPDRLSPWHGPLGA 228
           G  PP  G G  + P+  H    +SP   PLGA
Sbjct: 98  GMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGA 130

>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 88  ATYNAPSRI*VVCKGFSPPPVGKGASRRPITAHRPDRLSPWHGPL 222
           ++ N PSR+    +  S PP      +  +  HRP R   W  PL
Sbjct: 860 SSLNLPSRLPHTWRRLSEPPTRAVKPQVRLPFHRPPRAGAWRAPL 904

>PANB_WIGBR (Q8D2A5) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC|
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
          Length = 265

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 156 LPNGRWAESFADDLNTRRGIVSGRVALLPRSTEIQ 52
           L  G W      +LNTR   V G + L P+S  +Q
Sbjct: 113 LEGGLWVSDIIHELNTRSIPVCGHIGLTPQSINMQ 147

>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein|
            Rigui) (hPER)
          Length = 1290

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 81   PLCHLQCPVAYLSRLQRIQPTARWEGSFEAADHGTSAGPT*PMARA 218
            PL + +C       L +++   R EG+  A   G+SAGP  P A A
Sbjct: 972  PLFNSRCSSPLQLNLLQLEELPRAEGAAVAGGPGSSAGPPPPSAEA 1017

>MTHR_MACFA (Q60HE5) Methylenetetrahydrofolate reductase (EC 1.5.1.20)|
          Length = 656

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 18/50 (36%)
 Frame = -1

Query: 225 PQGPVPWAKSVRPMCRD---RP------PRS---------SLPNGRWAES 130
           P+ P+PWA S  P  R+   RP      P+S           PNGRW  S
Sbjct: 343 PRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNS 392

>MTHR_HUMAN (P42898) Methylenetetrahydrofolate reductase (EC 1.5.1.20)|
          Length = 656

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 18/50 (36%)
 Frame = -1

Query: 225 PQGPVPWAKSVRPMCRD---RP------PRS---------SLPNGRWAES 130
           P+ P+PWA S  P  R+   RP      P+S           PNGRW  S
Sbjct: 343 PRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNS 392

>MTHR_MOUSE (Q9WU20) Methylenetetrahydrofolate reductase (EC 1.5.1.20)|
          Length = 654

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 18/50 (36%)
 Frame = -1

Query: 225 PQGPVPWAKSVRPMCRD---RP------PRS---------SLPNGRWAES 130
           P+ P+PWA S  P  R+   RP      P+S           PNGRW  S
Sbjct: 342 PRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQDWDEFPNGRWGNS 391

>DED1_ASPFU (Q4WP13) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)|
          Length = 674

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 225 PQGPVPWAKSVRPMCRDRPPRSSLPNGRWAESFADDLNTR-RGIVSGRVALLPRSTEIQP 49
           P GP P A +         PR++   G WA + A D + R   + +G ++  P  T+ +P
Sbjct: 51  PPGPAPGAGAWNG------PRNAPRGGNWANANASDFSPRGPNVPNGNISWTPTETQRRP 104

>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = +2

Query: 17  SMGEGRIRATWGWISVDRGSKATLPLTMPRRVFKSSAKDSAHRPLGRELRGGRSRHIGRT 196
           +M    + AT G  ++  GS ATLP         SSA     +P G  L GGR   +GRT
Sbjct: 489 AMPTAAMAATMGSATI--GSAATLPTA----AVVSSAAAEGTQPSGLLLAGGRPALLGRT 542


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,917,699
Number of Sequences: 219361
Number of extensions: 954916
Number of successful extensions: 2882
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2879
length of database: 80,573,946
effective HSP length: 54
effective length of database: 68,728,452
effective search space used: 1649482848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)