ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E1BL_ADECR (Q96679) E1B protein, large T-antigen (Early E1B 55 k... 30 2.3
2BIO5_YEAST (P53744) 7-keto 8-aminopelargonic acid transported (K... 30 3.1
3NRDC_RAT (P47245) Nardilysin precursor (EC 3.4.24.61) (N-arginin... 30 3.1
4NRDC_MOUSE (Q8BHG1) Nardilysin precursor (EC 3.4.24.61) (N-argin... 30 3.1
5E1BL_ADECC (Q65943) E1B protein, large T-antigen (Early E1B 55 k... 30 3.1
6LSHB_TRIVU (O46482) Lutropin beta chain precursor (Luteinizing h... 26 3.7
7GPTC3_HUMAN (Q96I76) G patch domain-containing protein 3 30 4.0
8NRDC_PONPY (Q5R4H6) Nardilysin precursor (EC 3.4.24.61) (N-argin... 29 5.2
9NRDC_HUMAN (O43847) Nardilysin precursor (EC 3.4.24.61) (N-argin... 29 5.2
10YNC9_CAEEL (P34542) Hypothetical protein R05D3.9 precursor 29 6.8
11AMY2_SALTY (P26613) Cytoplasmic alpha-amylase (EC 3.2.1.1) (1,4-... 28 8.9

>E1BL_ADECR (Q96679) E1B protein, large T-antigen (Early E1B 55 kDa protein)|
          Length = 444

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
 Frame = -2

Query: 273 SHGVKRQLWFCYWKRGFGVPLFTHFAATSCT----RAGICLYMGSRKVV*CFCLCSIHVA 106
           SH + +    C    G G    +HF AT+CT       +C   G+   V    L +IH A
Sbjct: 268 SHSMFKDCACCIMLGGQGTIAHSHFMATTCTDTPMNLQLCTCEGNGSHV--VPLGNIHFA 325

Query: 105 *NSRTPFSPRFNRSSIVCILKF*SLNTNIFY 13
            N   P+ P FN + +V +  +      +F+
Sbjct: 326 SNREAPW-PTFNANVLVRVRLYMGRRRGVFH 355



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>BIO5_YEAST (P53744) 7-keto 8-aminopelargonic acid transported (KAPA|
           transporter)
          Length = 561

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -2

Query: 285 YKVSSHGVKRQLWFCYWKRGFGVPLFTHFAATSCTRAGICLYMGS 151
           YK  S G K          GF  PL+ HF +  C     C++MGS
Sbjct: 408 YKEGSLGNKSLKKLAVLTPGFKSPLYAHFLSQICVTIIGCIFMGS 452



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>NRDC_RAT (P47245) Nardilysin precursor (EC 3.4.24.61) (N-arginine dibasic|
           convertase) (NRD convertase) (NRD-C)
          Length = 1161

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 113 WILHRQKHYTTLRLPMYKHIPAL---VQEVAAKCVNNGTPKPRF 235
           W+ +   HY TL +   + +  L   V E+ ++  NNG PKP F
Sbjct: 381 WMRYYSAHYMTLVVQSKETLDTLEKWVTEIFSQIPNNGLPKPNF 424



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>NRDC_MOUSE (Q8BHG1) Nardilysin precursor (EC 3.4.24.61) (N-arginine dibasic|
           convertase) (NRD convertase) (NRD-C)
          Length = 1161

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 113 WILHRQKHYTTLRLPMYKHIPAL---VQEVAAKCVNNGTPKPRF 235
           W+ +   HY TL +   + +  L   V E+ ++  NNG PKP F
Sbjct: 381 WMRYYSAHYMTLVVQSKETLDTLEKWVTEIFSQIPNNGLPKPNF 424



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>E1BL_ADECC (Q65943) E1B protein, large T-antigen (Early E1B 55 kDa protein)|
          Length = 444

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
 Frame = -2

Query: 273 SHGVKRQLWFCYWKRGFGVPLFTHFAATSCT----RAGICLYMGSRKVV*CFCLCSIHVA 106
           SH + +    C    G G    +HF AT+CT       +C   G+   V    L +IH A
Sbjct: 268 SHSMFKDCACCIMFGGQGTIAHSHFMATTCTDTPMNLQLCTCEGNGSHV--VPLGNIHFA 325

Query: 105 *NSRTPFSPRFNRSSIVCILKF*SLNTNIFY 13
            N   P+ P FN + +V +  +      +F+
Sbjct: 326 SNREAPW-PTFNANVLVRVRLYMGRRRGVFH 355



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>LSHB_TRIVU (O46482) Lutropin beta chain precursor (Luteinizing hormone beta|
           subunit) (LSH-beta) (LSH-B) (LH-B)
          Length = 141

 Score = 25.8 bits (55), Expect(2) = 3.7
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
 Frame = -3

Query: 215 HCSHILQLLPA---PGPEYVCTW 156
           +C  ++++LPA   PGP+ VCT+
Sbjct: 58  YCPSMVRVLPAALPPGPQLVCTY 80



 Score = 22.7 bits (47), Expect(2) = 3.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 250 LVLLLEAGFWGA 215
           L+LLLE G WGA
Sbjct: 12  LLLLLEGGSWGA 23



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>GPTC3_HUMAN (Q96I76) G patch domain-containing protein 3|
          Length = 525

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 299 TVEKYTKFLLMESNDSSGFAIGSGVLGCHCSHILQLLPAPGPEYVC 162
           T E++TK +  +  +  G+A G G LGC CS + + L + G    C
Sbjct: 405 TFERHTKGIGRKVMERQGWAEGQG-LGCRCSGVPEALDSDGQHPRC 449



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>NRDC_PONPY (Q5R4H6) Nardilysin precursor (EC 3.4.24.61) (N-arginine dibasic|
           convertase) (NRD convertase) (NRD-C)
          Length = 1152

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 113 WILHRQKHYTTLRLPMYKHIPAL---VQEVAAKCVNNGTPKPRF 235
           W+ +   HY TL +   + +  L   V E+ ++  NNG P+P F
Sbjct: 371 WLRYYSAHYMTLVVQSKETLDTLEKWVTEIFSQIPNNGLPRPNF 414



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>NRDC_HUMAN (O43847) Nardilysin precursor (EC 3.4.24.61) (N-arginine dibasic|
           convertase) (NRD convertase) (NRD-C)
          Length = 1150

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 113 WILHRQKHYTTLRLPMYKHIPAL---VQEVAAKCVNNGTPKPRF 235
           W+ +   HY TL +   + +  L   V E+ ++  NNG P+P F
Sbjct: 369 WMRYYSSHYMTLVVQSKETLDTLEKWVTEIFSQIPNNGLPRPNF 412



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>YNC9_CAEEL (P34542) Hypothetical protein R05D3.9 precursor|
          Length = 646

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 248 GFAIGSGVLGCHCSHILQLLPAPGP 174
           GF    GV+ CHC H++ + P PGP
Sbjct: 19  GFVAFIGVVRCHCPHMMGVKP-PGP 42



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>AMY2_SALTY (P26613) Cytoplasmic alpha-amylase (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 494

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 65  DLLNLGENGVLEF*ATWILHRQKHYTTLRLPMYKHIPALVQEVAAKCVNNGTPKPRF 235
           D  N      +++ A W++  Q H    RL   KHIPA   +   + V    PKP F
Sbjct: 206 DFRNHAVTEEIKYWARWVME-QTHCDGFRLDAVKHIPAWFYKEWIEHVQAVAPKPLF 261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,863,037
Number of Sequences: 219361
Number of extensions: 1334669
Number of successful extensions: 3130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3130
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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