ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATS10_MOUSE (P58459) ADAMTS-10 (EC 3.4.24.-) (A disintegrin and ... 30 3.5
2Y904_TREPA (O83874) Hypothetical protein TP0904 29 5.9
3SELA_DESBA (P56372) L-seryl-tRNA(Sec) selenium transferase (EC 2... 29 5.9

>ATS10_MOUSE (P58459) ADAMTS-10 (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 10)
           (ADAM-TS 10) (ADAM-TS10) (Fragment)
          Length = 450

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
 Frame = -1

Query: 268 ERKF*KAREN*KDDENCHQ------EKLQGPMCPAPWCKL 167
           +R+   A E   DD  C Q      E  QGPMCP  W  L
Sbjct: 258 QRRVSAAEEKALDDSACPQPRPPVLEACQGPMCPPEWATL 297



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>Y904_TREPA (O83874) Hypothetical protein TP0904|
          Length = 83

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
 Frame = +1

Query: 175 TRERGT-SALAIFLGDSFHRPSS-----FPLLFKIFSLYKERIDHHTPPLFLQPFRTTC 333
           T+++GT +AL +FL   ++R S+      PLL  +FS+ +  + H T  + L+     C
Sbjct: 5   TQDKGTPAALQVFLLPQYNRYSAEMTRHVPLLCNLFSMSRYVLRHLTAQIILERMSAAC 63



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>SELA_DESBA (P56372) L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)|
           (Cysteinyl-tRNA(Sec) selenium transferase)
           (Selenocysteine synthase) (Selenocysteinyl-tRNA(Sec)
           synthase)
          Length = 465

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 17  ILGE*QPLTTANGCYHYQNLELQRTTVCSGTK 112
           IL E   L  A GC HY NLE+   T   G++
Sbjct: 98  ILAEEAVLAVAEGCRHYSNLEMDLDTGQRGSR 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,095,828
Number of Sequences: 219361
Number of extensions: 1239749
Number of successful extensions: 2827
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2827
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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