Clone Name | rbastl42h05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467537.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4486 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 321 tagaaccacttgtagctaagcagaactgagttgatgacatgcatgagcaagcggagattg 380 ||||| |||||||||||||||||||| || || || |||||||||| ||||||| || Sbjct: 4127 tagaatcacttgtagctaagcagaacagaattaattacatgcatgaataagcggatgctg 4068 Query: 381 ctgttatccaatgggctggtggtagggagcga 412 || | || ||||||||||||| |||||||| Sbjct: 4067 gtgctgtctgatgggctggtggtggggagcga 4036
>gb|BT019017.1| Zea mays clone Contig515.F mRNA sequence Length = 1513 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 327 cacttgtagctaagcagaactgagttgatgacatgcatga 366 |||||||||||||||||||| ||||| || |||||||||| Sbjct: 1144 cacttgtagctaagcagaaccgagttaattacatgcatga 1105
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 321 tagaaccacttgtagctaagcagaactgagttgatgacatgcatgagcaagcggagattg 380 ||||| |||||||||||||||||||| || || || |||||||||| ||||||| || Sbjct: 30034850 tagaatcacttgtagctaagcagaacagaattaattacatgcatgaataagcggatgctg 30034909 Query: 381 ctgttatccaatgggctggtggtagggagcga 412 || | || ||||||||||||| |||||||| Sbjct: 30034910 gtgctgtctgatgggctggtggtggggagcga 30034941
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 321 tagaaccacttgtagctaagcagaactgagttgatgacatgcatgagcaagcggagattg 380 ||||| |||||||||||||||||||| || || || |||||||||| ||||||| || Sbjct: 14447 tagaatcacttgtagctaagcagaacagaattaattacatgcatgaataagcggatgctg 14506 Query: 381 ctgttatccaatgggctggtggtagggagcga 412 || | || ||||||||||||| |||||||| Sbjct: 14507 gtgctgtctgatgggctggtggtggggagcga 14538
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 321 tagaaccacttgtagctaagcagaactgagttgatgacatgcatgagcaagcggagattg 380 ||||| |||||||||||||||||||| || || || |||||||||| ||||||| || Sbjct: 135126 tagaatcacttgtagctaagcagaacagaattaattacatgcatgaataagcggatgctg 135185 Query: 381 ctgttatccaatgggctggtggtagggagcga 412 || | || ||||||||||||| |||||||| Sbjct: 135186 gtgctgtctgatgggctggtggtggggagcga 135217
>dbj|AK122035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112L23, full insert sequence Length = 4485 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 321 tagaaccacttgtagctaagcagaactgagttgatgacatgcatgagcaagcggagattg 380 ||||| |||||||||||||||||||| || || || |||||||||| ||||||| || Sbjct: 4126 tagaatcacttgtagctaagcagaacagaattaattacatgcatgaataagcggatgctg 4067 Query: 381 ctgttatccaatgggctggtggtagggagcga 412 || | || ||||||||||||| |||||||| Sbjct: 4066 gtgctgtctgatgggctggtggtggggagcga 4035
>dbj|AK061221.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-F03, full insert sequence Length = 1316 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 321 tagaaccacttgtagctaagcagaactgagttgatgacatgcatgagcaagcggagattg 380 ||||| |||||||||||||||||||| || || || |||||||||| ||||||| || Sbjct: 1108 tagaatcacttgtagctaagcagaacagaattaattacatgcatgaataagcggatgctg 1049 Query: 381 ctgttatccaatgggctggtggtagggagcga 412 || | || ||||||||||||| |||||||| Sbjct: 1048 gtgctgtctgatgggctggtggtggggagcga 1017
>gb|AY109484.1| Zea mays CL3541_1 mRNA sequence Length = 1061 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 327 cacttgtagctaagcagaactgagttgatgacatgcatga 366 |||||||||||||||||||||||||| || ||||||||| Sbjct: 186 cacttgtagctaagcagaactgagttaattccatgcatga 225
>emb|AL445564.1|MPULM02 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3 Length = 321250 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 tttcaaaattttctctctata 272 ||||||||||||||||||||| Sbjct: 244906 tttcaaaattttctctctata 244926
>emb|AL645683.7| Mouse DNA sequence from clone RP23-374M7 on chromosome 13 Contains the V1ri9 gene for vomeronasal 1 receptor I9 and the gene for a novel vomeronasal 1 receptor I (V1ri) family member, complete sequence Length = 77611 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 aaagaaagaatagaccatcat 294 ||||||||||||||||||||| Sbjct: 72317 aaagaaagaatagaccatcat 72297
>emb|AL772408.4| Mouse DNA sequence from clone RP23-339B20 on chromosome 2, complete sequence Length = 208703 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 ttctagttttcccttgctttt 254 ||||||||||||||||||||| Sbjct: 136503 ttctagttttcccttgctttt 136523
>gb|AC099468.9| Rattus norvegicus 1 BAC CH230-37P5 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 212177 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 tgcttttcaaaattttctct 267 |||||||||||||||||||| Sbjct: 161572 tgcttttcaaaattttctct 161591
>gb|AC185523.2| Pan troglodytes chromosome X clone PTB-124O20 map human ortholog p11.3, complete sequence Length = 209530 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 catcaatcatattttgggtg 26 |||||||||||||||||||| Sbjct: 207609 catcaatcatattttgggtg 207628
>emb|AL590364.5| Human DNA sequence from clone RP11-342D14 on chromosome X Contains the 3' end of a novel gene, complete sequence Length = 65644 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 catcaatcatattttgggtg 26 |||||||||||||||||||| Sbjct: 57416 catcaatcatattttgggtg 57435
>emb|AL138920.11| Human DNA sequence from clone RP11-148B2 on chromosome 10 Contains the RAB18 gene for RAB18, member RAS oncogene family and a CpG island, complete sequence Length = 168217 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ttttcaaaattttctctcta 270 |||||||||||||||||||| Sbjct: 151009 ttttcaaaattttctctcta 150990
>emb|AL135918.6| Human DNA sequence from clone RP1-89K8 on chromosome 6, complete sequence Length = 110716 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 tttttcttggtgacagtttt 225 |||||||||||||||||||| Sbjct: 58817 tttttcttggtgacagtttt 58836
>emb|BX664015.1| Serratia marcescens plasmid R478 Length = 274762 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 aactgagttgatgacatgcatgag 367 |||||||||||||||||| ||||| Sbjct: 192053 aactgagttgatgacatgaatgag 192030
>gb|AC119409.25| Medicago truncatula clone mth2-10i9, complete sequence Length = 127954 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 tgagttgatgacatgcatga 366 |||||||||||||||||||| Sbjct: 76929 tgagttgatgacatgcatga 76910
>dbj|AK057337.1| Homo sapiens cDNA FLJ32775 fis, clone TESTI2002012 Length = 2688 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 ttttcaaaattttctctctataca 274 ||||| |||||||||||||||||| Sbjct: 759 ttttccaaattttctctctataca 736
>ref|XM_944060.1| PREDICTED: Homo sapiens hypothetical protein LOC145820 (LOC145820), mRNA Length = 2688 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 ttttcaaaattttctctctataca 274 ||||| |||||||||||||||||| Sbjct: 753 ttttccaaattttctctctataca 730
>ref|XM_378546.2| PREDICTED: Homo sapiens hypothetical protein LOC145820 (LOC145820), mRNA Length = 2688 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 ttttcaaaattttctctctataca 274 ||||| |||||||||||||||||| Sbjct: 753 ttttccaaattttctctctataca 730
>gb|AC008958.7| Homo sapiens chromosome 5 clone CTD-2353N24, complete sequence Length = 109526 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cttttcaaaattttctctct 269 |||||||||||||||||||| Sbjct: 94246 cttttcaaaattttctctct 94265
>dbj|AP002008.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-794P6, complete sequences Length = 194973 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 ctgcagccatttagaaccacttgt 333 |||||||||||| ||||||||||| Sbjct: 132318 ctgcagccattttgaaccacttgt 132341
>emb|AL591596.5| Zebrafish DNA sequence from clone XX-205M23, complete sequence Length = 84809 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 ttttctctctatacaaagaaagaa 283 |||||||| ||||||||||||||| Sbjct: 51042 ttttctctttatacaaagaaagaa 51019 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,455,767 Number of Sequences: 3902068 Number of extensions: 4455767 Number of successful extensions: 96245 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96158 Number of HSP's gapped (non-prelim): 87 length of query: 445 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 423 effective length of database: 17,147,199,772 effective search space: 7253265503556 effective search space used: 7253265503556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)