ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467690.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5gb|BT016893.1| Zea mays clone Contig726 mRNA sequence 78 3e-11
6gb|AY103745.1| Zea mays PCO097601 mRNA sequence 70 7e-09
7gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence 62 2e-06
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
9dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
10dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.096
11ref|NM_106101.2| Arabidopsis thaliana protein binding / ubiquiti... 44 0.38
12ref|NM_106102.3| Arabidopsis thaliana FUT3; fucosyltransferase/ ... 44 0.38
13gb|AY050433.1| Arabidopsis thaliana At1g74410/F1M20_9 mRNA, comp... 44 0.38
14gb|AC011765.6|AC011765 Arabidopsis thaliana chromosome 1 BAC F1M... 44 0.38
15gb|AY087335.1| Arabidopsis thaliana clone 34363 mRNA, complete s... 44 0.38
16gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6... 42 1.5
17emb|CR854834.11| Zebrafish DNA sequence from clone DKEYP-92B10 i... 42 1.5
18ref|XM_763163.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 1.5
19emb|BX649469.8| Zebrafish DNA sequence from clone DKEY-273O8 in ... 42 1.5
20gb|M86396.1|SCMEGFRA Schistosoma mansoni epidermal growth factor... 42 1.5
21gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, com... 40 5.9
22gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.9
23ref|XM_984295.1| PREDICTED: Mus musculus desmoglein 3 (Dsg3), mRNA 40 5.9
24gb|AF131215.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTC-... 40 5.9
25gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome 40 5.9
26ref|NM_030596.1| Mus musculus desmoglein 3 (Dsg3), mRNA 40 5.9
27emb|AL627313.16| Human DNA sequence from clone RP11-492M19 on ch... 40 5.9
28gb|AC105108.4| Homo sapiens chromosome 8, clone CTD2-3179G6, com... 40 5.9
29gb|AF403184.1| Desulfitobacterium hafniense clone 3277 putative ... 40 5.9
30dbj|AK148657.1| Mus musculus 2 days neonate sympathetic ganglion... 40 5.9
31dbj|AK029018.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 5.9
32gb|U86016.1|MMU86016 Mus musculus desmoglein 3 (DSG3) mRNA, part... 40 5.9
33dbj|AK037142.1| Mus musculus adult female vagina cDNA, RIKEN ful... 40 5.9
34gb|AC012089.13|AC012089 Homo sapiens 3 BAC RP11-758L3 (Roswell P... 40 5.9
35gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-1... 40 5.9
36gb|AC009429.3|AC009429 Homo sapiens, clone RP11-45M17, complete ... 40 5.9
37emb|AL929582.10| Zebrafish DNA sequence from clone CH211-117M12,... 40 5.9
38gb|AC132091.3| Mus musculus BAC clone RP24-465H15 from 18, compl... 40 5.9
39gb|AC173486.2| Mus musculus BAC clone RP23-18O16 from chromosome... 40 5.9
40gb|AC168066.4| Mus musculus BAC clone RP23-134F19 from chromosom... 40 5.9 
>ref|XM_467690.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3215

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 204  atatttctataaacaactgaggtcctctggatacacaccattcatgc-gatctctcgcca 262
            |||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||
Sbjct: 3037 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 2978

                 
Query: 263  gctct 267
            |||||
Sbjct: 2977 gctct 2973



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 375  ggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggcaccattggcgtcc 434
            ||||| |||||||| || |||||||||||||||||||| || ||  |||||||  |||||
Sbjct: 2837 ggtgctggtggcaaacggtttggtgtgcgtcggctgccagagttaccaccattcacgtcc 2778

                 
Query: 435  ccatt 439
            |||||
Sbjct: 2777 ccatt 2773



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 85/105 (80%), Gaps = 6/105 (5%)
 Strand = Plus / Minus

                                                                        
Query: 79   ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaat------ctc 132
            |||||||| |||||| ||  |||||||||||| ||| ||||| ||||||||      | |
Sbjct: 3171 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccacaccc 3112

                                                         
Query: 133  acaggccgagagagcatcagactgatcaatatagcaaaatgatcg 177
            |||||| ||| |||| |||||| |||||||||  |||||||||||
Sbjct: 3111 acaggctgagcgagcctcagacagatcaatatgccaaaatgatcg 3067
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                            
Query: 204      atatttctataaacaactgaggtcctctggatacacaccattcatgc-gatctctcgcca 262
                |||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||
Sbjct: 30880346 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 30880405

                     
Query: 263      gctct 267
                |||||
Sbjct: 30880406 gctct 30880410



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 375      ggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggcaccattggcgtcc 434
                ||||| |||||||| || |||||||||||||||||||| || ||  |||||||  |||||
Sbjct: 30880546 ggtgctggtggcaaacggtttggtgtgcgtcggctgccagagttaccaccattcacgtcc 30880605

                     
Query: 435      ccatt 439
                |||||
Sbjct: 30880606 ccatt 30880610



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 85/105 (80%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 79       ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaat------ctc 132
                |||||||| |||||| ||  |||||||||||| ||| ||||| ||||||||      | |
Sbjct: 30880212 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccacaccc 30880271

                                                             
Query: 133      acaggccgagagagcatcagactgatcaatatagcaaaatgatcg 177
                |||||| ||| |||| |||||| |||||||||  |||||||||||
Sbjct: 30880272 acaggctgagcgagcctcagacagatcaatatgccaaaatgatcg 30880316
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>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684F11
          Length = 147731

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                         
Query: 204   atatttctataaacaactgaggtcctctggatacacaccattcatgc-gatctctcgcca 262
             |||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||
Sbjct: 63923 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 63982

                  
Query: 263   gctct 267
             |||||
Sbjct: 63983 gctct 63987



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 375   ggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggcaccattggcgtcc 434
             ||||| |||||||| || |||||||||||||||||||| || ||  |||||||  |||||
Sbjct: 64123 ggtgctggtggcaaacggtttggtgtgcgtcggctgccagagttaccaccattcacgtcc 64182

                  
Query: 435   ccatt 439
             |||||
Sbjct: 64183 ccatt 64187



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 85/105 (80%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                         
Query: 79    ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaat------ctc 132
             |||||||| |||||| ||  |||||||||||| ||| ||||| ||||||||      | |
Sbjct: 63789 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccacaccc 63848

                                                          
Query: 133   acaggccgagagagcatcagactgatcaatatagcaaaatgatcg 177
             |||||| ||| |||| |||||| |||||||||  |||||||||||
Sbjct: 63849 acaggctgagcgagcctcagacagatcaatatgccaaaatgatcg 63893
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>dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K16, full
            insert sequence
          Length = 3215

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 204  atatttctataaacaactgaggtcctctggatacacaccattcatgc-gatctctcgcca 262
            |||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||
Sbjct: 3037 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 2978

                 
Query: 263  gctct 267
            |||||
Sbjct: 2977 gctct 2973



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 375  ggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggcaccattggcgtcc 434
            ||||| |||||||| || |||||||||||||||||||| || ||  |||||||  |||||
Sbjct: 2837 ggtgctggtggcaaacggtttggtgtgcgtcggctgccagagttaccaccattcacgtcc 2778

                 
Query: 435  ccatt 439
            |||||
Sbjct: 2777 ccatt 2773



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 85/105 (80%), Gaps = 6/105 (5%)
 Strand = Plus / Minus

                                                                        
Query: 79   ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaat------ctc 132
            |||||||| |||||| ||  |||||||||||| ||| ||||| ||||||||      | |
Sbjct: 3171 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccacaccc 3112

                                                         
Query: 133  acaggccgagagagcatcagactgatcaatatagcaaaatgatcg 177
            |||||| ||| |||| |||||| |||||||||  |||||||||||
Sbjct: 3111 acaggctgagcgagcctcagacagatcaatatgccaaaatgatcg 3067
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>gb|BT016893.1| Zea mays clone Contig726 mRNA sequence
          Length = 858

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 362 ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 421
           ||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||||
Sbjct: 212 ttagtattttggcggtgctggtggcaaccggtttggtgtgcgccggctgccagagttggc 271

              
Query: 422 acc 424
           |||
Sbjct: 272 acc 274
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>gb|AY103745.1| Zea mays PCO097601 mRNA sequence
          Length = 1567

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                        
Query: 362  ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 421
            ||||||||| |||||||| ||||||||||| || |||||||| |||||||| || |||||
Sbjct: 1316 ttagtattttggcggtgctggtggcaaccggttcggtgtgcgccggctgccagagttggc 1257

               
Query: 422  acc 424
            |||
Sbjct: 1256 acc 1254
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>gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence
          Length = 1254

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 362  ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 421
            ||||||||| ||||| || ||||||||||| || |||||||| |||||||| || |||||
Sbjct: 1079 ttagtattttggcggggctggtggcaaccggttcggtgtgcgccggctgccagagttggc 1020

               
Query: 422  acc 424
            |||
Sbjct: 1019 acc 1017
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                           
Query: 362     ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 421
               ||||||||| || ||||| || || ||||| ||||| |||||||||||||| || |||||
Sbjct: 7680453 ttagtatttaggaggtgctggaggtaaccggtttggagtgcgtcggctgccggagttggc 7680394

                  
Query: 422     acc 424
               |||
Sbjct: 7680393 acc 7680391
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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OJ1136_C11
          Length = 124827

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                          
Query: 362    ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 421
              ||||||||| || ||||| || || ||||| ||||| |||||||||||||| || |||||
Sbjct: 103708 ttagtatttaggaggtgctggaggtaaccggtttggagtgcgtcggctgccggagttggc 103649

                 
Query: 422    acc 424
              |||
Sbjct: 103648 acc 103646
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>dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full
            insert sequence
          Length = 3307

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 362  ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 421
            ||||||||| || ||||| || || ||||| ||||| || ||||||||||| || |||||
Sbjct: 2949 ttagtatttaggaggtgctggaggtaaccggtttggagtacgtcggctgccggagttggc 2890

               
Query: 422  acc 424
            |||
Sbjct: 2889 acc 2887
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>ref|NM_106101.2| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
           zinc ion binding AT1G74410 mRNA, complete cds
          Length = 1062

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 68  agacttacaagttacaacaaca 89
           ||||||||||||||||||||||
Sbjct: 914 agacttacaagttacaacaaca 893
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>ref|NM_106102.3| Arabidopsis thaliana FUT3; fucosyltransferase/ transferase,
            transferring glycosyl groups AT1G74420 (FUT3) transcript
            variant AT1G74420.1 mRNA, complete cds
          Length = 2114

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 68   agacttacaagttacaacaaca 89
            ||||||||||||||||||||||
Sbjct: 1913 agacttacaagttacaacaaca 1934
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>gb|AY050433.1| Arabidopsis thaliana At1g74410/F1M20_9 mRNA, complete cds
          Length = 1061

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 68  agacttacaagttacaacaaca 89
           ||||||||||||||||||||||
Sbjct: 912 agacttacaagttacaacaaca 891
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>gb|AC011765.6|AC011765 Arabidopsis thaliana chromosome 1 BAC F1M20 genomic sequence, complete
             sequence
          Length = 134402

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 68    agacttacaagttacaacaaca 89
             ||||||||||||||||||||||
Sbjct: 24074 agacttacaagttacaacaaca 24053
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>gb|AY087335.1| Arabidopsis thaliana clone 34363 mRNA, complete sequence
          Length = 1036

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 68  agacttacaagttacaacaaca 89
           ||||||||||||||||||||||
Sbjct: 914 agacttacaagttacaacaaca 893
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>gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete
              sequence
          Length = 252420

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     aggaatataatacaccaatgg 37
              |||||||||||||||||||||
Sbjct: 148264 aggaatataatacaccaatgg 148284
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>emb|CR854834.11| Zebrafish DNA sequence from clone DKEYP-92B10 in linkage group 11,
             complete sequence
          Length = 140484

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 320   atgccatgaaaaatatgattc 340
             |||||||||||||||||||||
Sbjct: 40570 atgccatgaaaaatatgattc 40590
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>ref|XM_763163.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_127_27159_25633) partial mRNA
          Length = 1527

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 75  caagttacaacaacagagttcagaa 99
           |||||||||| ||||||||||||||
Sbjct: 969 caagttacaagaacagagttcagaa 993
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>emb|BX649469.8| Zebrafish DNA sequence from clone DKEY-273O8 in linkage group 7,
             complete sequence
          Length = 80705

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 271   ttcttcatcccagtctgtttt 291
             |||||||||||||||||||||
Sbjct: 15968 ttcttcatcccagtctgtttt 15948
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>gb|M86396.1|SCMEGFRA Schistosoma mansoni epidermal growth factor receptor (SER, class 1
            product) mRNA, complete cds
          Length = 6051

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 319  catgccatgaaaaatatgatt 339
            |||||||||||||||||||||
Sbjct: 2823 catgccatgaaaaatatgatt 2803
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>gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, complete sequence
          Length = 164142

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    tattcttcatcccagtctgt 288
              ||||||||||||||||||||
Sbjct: 153695 tattcttcatcccagtctgt 153676
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>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete
              sequence
          Length = 1194300

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      aagaatggaaggaatataat 27
              ||||||||||||||||||||
Sbjct: 923427 aagaatggaaggaatataat 923446
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>ref|XM_984295.1| PREDICTED: Mus musculus desmoglein 3 (Dsg3), mRNA
          Length = 2830

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 tattcttcatcccagtctgt 288
           ||||||||||||||||||||
Sbjct: 988 tattcttcatcccagtctgt 969
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>gb|AF131215.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTC-306G11, complete
             sequence; and clones CTC-493P15, CTB-91N18, CTC-164D9,
             partial sequence
          Length = 186607

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   cacaggccgagagagcatca 151
             ||||||||||||||||||||
Sbjct: 11593 cacaggccgagagagcatca 11612
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>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome
          Length = 3059876

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 407    gctgcctgaattggcaccattggc 430
              |||||||| |||||||||||||||
Sbjct: 465022 gctgcctgtattggcaccattggc 465045
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>ref|NM_030596.1| Mus musculus desmoglein 3 (Dsg3), mRNA
          Length = 3578

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 tattcttcatcccagtctgt 288
           ||||||||||||||||||||
Sbjct: 992 tattcttcatcccagtctgt 973
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>emb|AL627313.16| Human DNA sequence from clone RP11-492M19 on chromosome 1 Contains a
              novel pseudogene (LOC151871), a novel gene similar to
              ribosomal protein S6 kinase, 90kDa, polypeptide 1
              (RPS6KA1), a chromosome 20 open reading frame 52 (C20orf52)
              pseudogene and two CpG islands, complete sequence
          Length = 128342

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    agagcatgccatgaaaaata 334
              ||||||||||||||||||||
Sbjct: 119310 agagcatgccatgaaaaata 119291
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>gb|AC105108.4| Homo sapiens chromosome 8, clone CTD2-3179G6, complete sequence
          Length = 141073

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    cacaggccgagagagcatca 151
              ||||||||||||||||||||
Sbjct: 116902 cacaggccgagagagcatca 116921
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>gb|AF403184.1| Desulfitobacterium hafniense clone 3277 putative uroporphyrinogen
           III synthase/methyltransferase, membrane docking
           protein, reductive dehalogenase, putative membrane
           docking protein, putative reductive dehalogenase,
           putative transcription regulator, putative GroEL-type
           chaperonin, putative membrane-bound regulatory protein,
           and putative GroEL-type chaperonin genes, complete cds;
           and unknown genes
          Length = 27716

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aagggagtgagagcatgcca 325
           ||||||||||||||||||||
Sbjct: 684 aagggagtgagagcatgcca 703
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>dbj|AK148657.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
           full-length enriched library, clone:7120431F07
           product:desmoglein 3, full insert sequence
          Length = 4109

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 tattcttcatcccagtctgt 288
           ||||||||||||||||||||
Sbjct: 962 tattcttcatcccagtctgt 943
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>dbj|AK029018.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
           library, clone:4732482D04 product:desmoglein 3, full
           insert sequence
          Length = 3483

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 tattcttcatcccagtctgt 288
           ||||||||||||||||||||
Sbjct: 983 tattcttcatcccagtctgt 964
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>gb|U86016.1|MMU86016 Mus musculus desmoglein 3 (DSG3) mRNA, partial cds
          Length = 2979

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 tattcttcatcccagtctgt 288
           ||||||||||||||||||||
Sbjct: 890 tattcttcatcccagtctgt 871
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>dbj|AK037142.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
           library, clone:9930125N18 product:desmoglein 3, full
           insert sequence
          Length = 3578

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 tattcttcatcccagtctgt 288
           ||||||||||||||||||||
Sbjct: 992 tattcttcatcccagtctgt 973
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>gb|AC012089.13|AC012089 Homo sapiens 3 BAC RP11-758L3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 150429

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    attgcaagtttgatggaaga 70
             ||||||||||||||||||||
Sbjct: 22666 attgcaagtttgatggaaga 22647
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>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete sequence
          Length = 128810

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    caatcaccatacatagccta 202
              ||||||||||||||||||||
Sbjct: 104361 caatcaccatacatagccta 104380
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>gb|AC009429.3|AC009429 Homo sapiens, clone RP11-45M17, complete sequence
          Length = 160417

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     attgcaagtttgatggaaga 70
              ||||||||||||||||||||
Sbjct: 129797 attgcaagtttgatggaaga 129778
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>emb|AL929582.10| Zebrafish DNA sequence from clone CH211-117M12, complete sequence
          Length = 175577

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 5      aaaaagaatggaaggaatataata 28
              |||||||||| |||||||||||||
Sbjct: 117289 aaaaagaatgaaaggaatataata 117266
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>gb|AC132091.3| Mus musculus BAC clone RP24-465H15 from 18, complete sequence
          Length = 140256

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  tattcttcatcccagtctgt 288
            ||||||||||||||||||||
Sbjct: 1619 tattcttcatcccagtctgt 1600
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>gb|AC173486.2| Mus musculus BAC clone RP23-18O16 from chromosome 16, complete sequence
          Length = 208322

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tggcaacaaaatctcacagg 137
             ||||||||||||||||||||
Sbjct: 71162 tggcaacaaaatctcacagg 71143
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>gb|AC168066.4| Mus musculus BAC clone RP23-134F19 from chromosome 16, complete
             sequence
          Length = 198238

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   tggcaacaaaatctcacagg 137
             ||||||||||||||||||||
Sbjct: 82449 tggcaacaaaatctcacagg 82468


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,263,430
Number of Sequences: 3902068
Number of extensions: 4263430
Number of successful extensions: 92014
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91837
Number of HSP's gapped (non-prelim): 177
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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