ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl42h02 |
|---|---|
| Clone Library Name | barley_pub |
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 32.7 bits (73), Expect = 0.47 Identities = 27/79 (34%), Positives = 41/79 (51%) Frame = +3 Query: 102 QTGPKMTESTNPKADRQLPVNAHRIYPQVTTELTTTSRNS*ITYAQSLTSHLTSLPCSCS 281 QTGP ST P A+ + P+ +T T+ S +S +T + +L L++LP + Sbjct: 4194 QTGPPTHTSTAPIAE----LTTSNPPPESSTPQTSRSTSSPLTESTTL---LSTLPPAIE 4246 Query: 282 YP*TINPPRTPSAATTGTG 338 T PP TP+A TT +G Sbjct: 4247 MTSTA-PPSTPTAPTTTSG 4264
>LAMP3_MACMU (Q8MJJ2) Lysosome-associated membrane glycoprotein 3 precursor| (LAMP-3) (Lysosomal-associated membrane protein 3) (DC-lysosome-associated membrane glycoprotein) (DC LAMP) (CD208 antigen) Length = 416 Score = 30.8 bits (68), Expect = 1.8 Identities = 24/72 (33%), Positives = 35/72 (48%) Frame = +3 Query: 120 TESTNPKADRQLPVNAHRIYPQVTTELTTTSRNS*ITYAQSLTSHLTSLPCSCSYP*TIN 299 T +T P + P + IY VTT+ T+ + ++ A LT +T P Y ++ Sbjct: 83 TPTTTPVTTKNTPTTSPIIYTLVTTQATSNNSHT----APPLTK-VTVGPSLAPY--SLP 135 Query: 300 PPRTPSAATTGT 335 P TP A TTGT Sbjct: 136 PTITPPAHTTGT 147
>YCEH_ECOLI (P29217) Hypothetical protein yceH (G20.3)| Length = 215 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +2 Query: 134 SKSGPSTSCKRTPNLPPGDN*AHNNIQEQLDNLCTISYI 250 S +G T+C + N P N + + +QEQLDNL Y+ Sbjct: 30 SVNGVVTACNQKTNREPVMNLSESEVQEQLDNLVKRHYL 68
>RL34_ICTPU (Q90YT5) 60S ribosomal protein L34| Length = 116 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -1 Query: 434 TSEKTALRRSPMNRMVWISQGATGAASRPFLWPSP-RRRGARCSR 303 TS KT L R+P NR+V++ TG A + P R RG R R Sbjct: 15 TSNKTRLSRTPGNRIVYLYTKKTGKAPKSACGICPGRLRGIRAVR 59
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.0 bits (66), Expect = 3.1 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 3/98 (3%) Frame = +3 Query: 84 HRSSK*QTGPKMTESTNPKADRQLPVNAHRIYPQVTTELTTTSRNS*ITYAQSLTSHLTS 263 H S+ T MT +TN A + RI ++TT TTT+ A T+ L+S Sbjct: 4729 HTSTVLTTTATMTRATNSTATPSSTLGTTRILTELTTTATTTA-------ATGSTATLSS 4781 Query: 264 LPCS---CSYP*TINPPRTPSAATTGTGPEERARRSPR 368 P + + P TI P+ +T T +P+ Sbjct: 4782 TPGTTWILTEPSTIATVMVPTGSTATTSSTLGTAHTPK 4819
>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein| (Dystrophia myotonica-containing WD repeat motif protein) (DMR-N9 protein) Length = 650 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/41 (39%), Positives = 18/41 (43%) Frame = +3 Query: 267 PCSCSYP*TINPPRTPSAATTGTGPEERARRSPRCSLGDPD 389 P + S P P +P A G GP A R LGDPD Sbjct: 49 PAAASGPGAAGPASSPPPAGPGPGPALPAVRLSLVRLGDPD 89
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 28.5 bits (62), Expect = 8.9 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 5/99 (5%) Frame = +3 Query: 105 TGPKMTESTNPKADRQLPVNAHRIYPQVTTELTTTSRNS*ITYAQSLTSHLTSLPCSCSY 284 T P + +T+P + P +T TTS + T + T+ T P + + Sbjct: 1415 TSPLTSSATSPTTSHITSTVSPTTSPTTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTSTT 1474 Query: 285 P*TINPPR-----TPSAATTGTGPEERARRSPRCSLGDP 386 T +P TPS T+ T P SP S P Sbjct: 1475 SPTPSPTTSTTSPTPSPTTSTTSPTTSPITSPTTSTTSP 1513
>THIK5_ARATH (Q570C8) 3-ketoacyl-CoA thiolase 5, peroxisomal precursor (EC| 2.3.1.16) (Beta-ketothiolase 5) (Acetyl-CoA acyltransferase 5) (Peroxisomal 3-oxoacyl-CoA thiolase 5) Length = 457 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -1 Query: 374 GATGAASRPFLWPSPRRRGARCSRGVYRLWVATGAG 267 GATGA L +RRG C GV + + TG G Sbjct: 397 GATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMG 432
>THIK2_ARATH (Q56WD9) 3-ketoacyl-CoA thiolase 2, peroxisomal precursor (EC| 2.3.1.16) (Beta-ketothiolase 2) (Acetyl-CoA acyltransferase 2) (Peroxisomal 3-oxoacyl-CoA thiolase 2) (Peroxisome defective protein 1) Length = 462 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -1 Query: 374 GATGAASRPFLWPSPRRRGARCSRGVYRLWVATGAG 267 GATGA L +RRG C GV + + TG G Sbjct: 396 GATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMG 431
>BGAL_PSEHA (P81650) Beta-galactosidase (EC 3.2.1.23) (Lactase)| (Beta-D-galactoside galactohydrolase) Length = 1038 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/63 (25%), Positives = 29/63 (46%) Frame = +3 Query: 144 DRQLPVNAHRIYPQVTTELTTTSRNS*ITYAQSLTSHLTSLPCSCSYP*TINPPRTPSAA 323 D+ V+ +Y +++ EL+ ++ + L + C+ YP +NPP PS Sbjct: 59 DKPEAVDESLLYEKISKELSGDWQSITVPSNWQLHGFDKPIYCNVKYPFAVNPPFVPSDN 118 Query: 324 TTG 332 TG Sbjct: 119 PTG 121
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +3 Query: 189 TTELTTTSRNS*ITYAQSLTSHLTSLPCSCSYP*TINPPRTPSAATTGTGP 341 TT T+T+ + T S TS ++ P + S T TP+ +TT T P Sbjct: 223 TTPTTSTTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTPTTSTTSTAP 273 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,569,385 Number of Sequences: 219361 Number of extensions: 1537645 Number of successful extensions: 4247 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4050 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4240 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
