ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl42h01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC159292.3| Mus musculus BAC clone RP23-290D9 from chromosome 10, complete sequence Length = 224627 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Plus Query: 292 attatttatctcccttttgttcatcc 317 |||||||||||||||||||||||||| Sbjct: 119989 attatttatctcccttttgttcatcc 120014
>gb|AC079601.25| Homo sapiens 12 BAC RP11-328C8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96201 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 24 ttcactgcattcattcattcat 45 |||||||||||||||||||||| Sbjct: 6998 ttcactgcattcattcattcat 6977
>gb|AC129948.3| Branchiostoma floridae, clone -33B4, complete sequence Length = 66265 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 31 cattcattcattcatatgaacc 52 |||||||||||||||||||||| Sbjct: 42926 cattcattcattcatatgaacc 42947
>gb|AC129947.4| Branchiostoma floridae, clone -36D2, complete sequence Length = 67258 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 31 cattcattcattcatatgaacc 52 |||||||||||||||||||||| Sbjct: 9373 cattcattcattcatatgaacc 9394
>gb|AC122455.4| Mus musculus BAC clone RP24-263K11 from chromosome 8, complete sequence Length = 148213 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 acatcatattatttatctccc 305 ||||||||||||||||||||| Sbjct: 44583 acatcatattatttatctccc 44563
>gb|AY494985.1| Dimorphotheca sinuata delta9 fatty acid conjugase-like enzyme mRNA, complete cds Length = 1318 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 187 actcatccttccatccctccctatg 211 ||||||||||||||||||| ||||| Sbjct: 810 actcatccttccatccctcactatg 834
>gb|AC104241.7| Homo sapiens chromosome 11, clone RP11-45A12, complete sequence Length = 147821 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 cattcattcattcatatgaac 51 ||||||||||||||||||||| Sbjct: 96635 cattcattcattcatatgaac 96655
>emb|AM072475.1| Charadrius alexandrinus microsatellite DNA, locus Calex-23, isolate Individual 4349, clone Kp 47.c08 Length = 720 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 tattatttatctcccttttgt 311 ||||||||||||||||||||| Sbjct: 481 tattatttatctcccttttgt 501
>emb|AM072474.1| Charadrius alexandrinus microsatellite DNA, locus Calex-23, isolate Individual 4349, clone Kp 46.h12 Length = 718 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 tattatttatctcccttttgt 311 ||||||||||||||||||||| Sbjct: 479 tattatttatctcccttttgt 499
>emb|AL357497.17| Human DNA sequence from clone RP11-637O19 on chromosome 6 Contains the 5' end of the GCMB gene for glial cells missing (Drosophila) homolog b, a novel gene, the 5' end of the gene for a novel protein similar to synaptonemal complex protein 2 (SYCP2) and a CpG island, complete sequence Length = 82952 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 agtagaaagatgttttcactg 30 ||||||||||||||||||||| Sbjct: 25063 agtagaaagatgttttcactg 25083
>gb|AC092733.18| Homo sapiens chromosome 11, clone RP11-193F22, complete sequence Length = 195538 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 cattcattcattcatatgaac 51 ||||||||||||||||||||| Sbjct: 18600 cattcattcattcatatgaac 18620
>gb|AC068522.7| Homo sapiens chromosome 8, clone RP11-23K11, complete sequence Length = 146952 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 cattcattcattcatatgaac 51 ||||||||||||||||||||| Sbjct: 28104 cattcattcattcatatgaac 28124
>gb|AC009927.10| Homo sapiens chromosome 8, clone RP11-114M5, complete sequence Length = 166985 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 cattcattcattcatatgaac 51 ||||||||||||||||||||| Sbjct: 128804 cattcattcattcatatgaac 128824
>gb|AC015724.9| Homo sapiens chromosome 17, clone RP11-45J24, complete sequence Length = 189055 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 tcactgcattcattcattcat 45 ||||||||||||||||||||| Sbjct: 32792 tcactgcattcattcattcat 32772
>gb|AC160983.2| Mus musculus BAC clone RP23-335A9 from chromosome 9, complete sequence Length = 188085 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 cattcattcattcatatgaac 51 ||||||||||||||||||||| Sbjct: 51068 cattcattcattcatatgaac 51048
>dbj|AK051545.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130055K10 product:unclassifiable, full insert sequence Length = 2034 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 acatcatattatttatctccc 305 ||||||||||||||||||||| Sbjct: 1382 acatcatattatttatctccc 1362
>gb|AC005553.1|AC005553 Homo sapiens chromosome 17, clone hRPK.112_J_9, complete sequence Length = 179651 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 tcactgcattcattcattcat 45 ||||||||||||||||||||| Sbjct: 117415 tcactgcattcattcattcat 117395
>gb|L20569.1|HUMCYP7A01 Homo sapiens cholesterol 7 alpha-hydroxylase (CYP7) gene, 5' upstream DNA fragment Length = 2575 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 cattcattcattcatatgaac 51 ||||||||||||||||||||| Sbjct: 939 cattcattcattcatatgaac 959
>gb|DQ223786.1| Epinephelus guttatus clone RhCA007 microsatellite sequence Length = 574 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ttttcactgcattcattcat 41 |||||||||||||||||||| Sbjct: 360 ttttcactgcattcattcat 379
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 atgtagtagtagctcctact 128 |||||||||||||||||||| Sbjct: 380833 atgtagtagtagctcctact 380852
>gb|AC150690.7| Bos taurus BAC CH240-151A24 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 194641 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cactgcattcattcattcat 45 |||||||||||||||||||| Sbjct: 145771 cactgcattcattcattcat 145790
>ref|XM_419923.1| PREDICTED: Gallus gallus similar to hypothetical protein INM01 (LOC421905), mRNA Length = 554 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 tccacaaaatacacaaacct 75 |||||||||||||||||||| Sbjct: 321 tccacaaaatacacaaacct 340
>gb|AC122922.4| Mus musculus BAC clone RP23-34M5 from chromosome 1, complete sequence Length = 223959 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 agtggcactctctctatctgtctc 165 ||||||||||||||| |||||||| Sbjct: 194471 agtggcactctctctgtctgtctc 194494
>gb|AC142103.3| Mus musculus BAC clone RP24-287E15 from chromosome 17, complete sequence Length = 175787 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cattcattcattcatatgaa 50 |||||||||||||||||||| Sbjct: 38134 cattcattcattcatatgaa 38115
>gb|AC158987.3| Mus musculus BAC clone RP23-366K1 from chromosome 9, complete sequence Length = 222125 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 tctgtctcaacaacaagaac 177 |||||||||||||||||||| Sbjct: 40677 tctgtctcaacaacaagaac 40658
>gb|AC113476.20| Mus musculus chromosome 17, clone RP23-304J1, complete sequence Length = 227026 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cattcattcattcatatgaa 50 |||||||||||||||||||| Sbjct: 26798 cattcattcattcatatgaa 26817
>ref|XM_544072.2| PREDICTED: Canis familiaris similar to Gamma-1-syntrophin (G1SYN) (Syntrophin 4) (SYN4) (LOC486943), mRNA Length = 1602 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ttcactgcattcattcattc 43 |||||||||||||||||||| Sbjct: 1446 ttcactgcattcattcattc 1465
>gb|AC134570.5| Mus musculus BAC clone RP24-252B18 from chromosome 18, complete sequence Length = 183551 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 ttttcactgcattcattcattcat 45 |||| ||||||||||||||||||| Sbjct: 115416 ttttaactgcattcattcattcat 115439
>gb|AC132391.3| Mus musculus BAC clone RP23-454N21 from chromosome 12, complete sequence Length = 178291 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccatgtccacaaaatacaca 70 |||||||||||||||||||| Sbjct: 156924 ccatgtccacaaaatacaca 156905
>gb|AC124384.4| Mus musculus BAC clone RP24-413G2 from chromosome 12, complete sequence Length = 183707 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ccatgtccacaaaatacaca 70 |||||||||||||||||||| Sbjct: 170770 ccatgtccacaaaatacaca 170789
>gb|AC166347.2| Mus musculus BAC clone RP24-87G12 from chromosome 6, complete sequence Length = 193181 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 cactgcattcattcattcat 45 |||||||||||||||||||| Sbjct: 137874 cactgcattcattcattcat 137855
>emb|BX664618.12| Zebrafish DNA sequence from clone DKEYP-82A1 in linkage group 8, complete sequence Length = 135532 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 tcatattatttatctcccttttgt 311 ||||||||||||| |||||||||| Sbjct: 24606 tcatattatttatttcccttttgt 24629
>emb|AJ011856.1|SCE011856 Saccharomyces cerevisiae complete mitochondrial genome Length = 85779 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 atattatttatctccctttt 309 |||||||||||||||||||| Sbjct: 34554 atattatttatctccctttt 34573
>emb|AL606504.14| Human DNA sequence from clone RP11-358K2 on chromosome 10, complete sequence Length = 81147 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 gtggcactctctctatctgtctca 166 |||||||||||||| ||||||||| Sbjct: 72055 gtggcactctctctttctgtctca 72032
>emb|AL606825.4| Human DNA sequence from clone RP11-20O12 on chromosome 13 Contains a novel gene, complete sequence Length = 89764 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cattcattcattcatatgaa 50 |||||||||||||||||||| Sbjct: 62416 cattcattcattcatatgaa 62435
>emb|AL596257.5| Human DNA sequence from clone RP11-251B9 on chromosome 1, complete sequence Length = 60169 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 cactgcattcattcattcat 45 |||||||||||||||||||| Sbjct: 200 cactgcattcattcattcat 181
>emb|AL357117.20| Human DNA sequence from clone RP11-436I24 on chromosome 6 Contains part of the gene for a novel protein (contains KIAA0680), a novel gene and a CpG island, complete sequence Length = 139627 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 cactgcattcattcattcat 45 |||||||||||||||||||| Sbjct: 3734 cactgcattcattcattcat 3715
>gb|AC091616.2| Rattus norvegicus strain Brown Norway clone RP31-153J8, complete sequence Length = 125026 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 actcatccttccatccctcc 206 |||||||||||||||||||| Sbjct: 88436 actcatccttccatccctcc 88417
>emb|AL109742.12|HSJ542O18 Human DNA sequence from clone RP4-542O18 on chromosome 1p32.3-34.1 Contains GSSs, complete sequence Length = 101453 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 tctgtctcaacaacaagaac 177 |||||||||||||||||||| Sbjct: 51484 tctgtctcaacaacaagaac 51465
>ref|XM_783234.1| PREDICTED: Strongylocentrotus purpuratus similar to SMC hinge domain containing 1 (LOC583320), partial mRNA Length = 4117 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 caacaacaagaaccgttgta 184 |||||||||||||||||||| Sbjct: 1866 caacaacaagaaccgttgta 1847
>gb|AC008083.23| Homo sapiens 12 BAC RP11-493L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 192046 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 taatgtagtagtagctccta 126 |||||||||||||||||||| Sbjct: 92200 taatgtagtagtagctccta 92181
>gb|AC163293.4| Mus musculus BAC clone RP23-156J21 from chromosome 16, complete sequence Length = 205834 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 ctactcatccttccatccctccct 208 |||||||||| ||||||||||||| Sbjct: 99293 ctactcatccctccatccctccct 99270
>emb|CR450728.8| Zebrafish DNA sequence from clone DKEY-204K18 in linkage group 8, complete sequence Length = 193025 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 18 gatgttttcactgcattcattcattcat 45 |||||||||| | ||||||||||||||| Sbjct: 46899 gatgttttcaattcattcattcattcat 46872
>gb|AC117945.2| Homo sapiens chromosome 1 clone RP4-614N24, complete sequence Length = 160557 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cactgcattcattcattcat 45 |||||||||||||||||||| Sbjct: 1801 cactgcattcattcattcat 1820
>emb|BX957309.6| Zebrafish DNA sequence from clone CH211-113P19 in linkage group 13, complete sequence Length = 169630 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 ttttcactgcattcattcattcat 45 |||||| ||||||||||||||||| Sbjct: 122684 ttttcagtgcattcattcattcat 122707
>gb|AC015871.7| Homo sapiens chromosome 15, clone RP11-81A1, complete sequence Length = 151128 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 tctgtctcaacaacaagaac 177 |||||||||||||||||||| Sbjct: 44707 tctgtctcaacaacaagaac 44726
>gb|AC011483.7| Homo sapiens chromosome 19 clone CTB-147C22, complete sequence Length = 107487 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ctgcattcattcattcatat 47 |||||||||||||||||||| Sbjct: 45058 ctgcattcattcattcatat 45039
>gb|AC113132.3| Homo sapiens chromosome 18, clone RP11-433F3, complete sequence Length = 170609 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 atattatttatctccctttt 309 |||||||||||||||||||| Sbjct: 165707 atattatttatctccctttt 165726
>gb|AC090064.3| Homo sapiens chromosome 5 clone CTB-43C3, complete sequence Length = 124882 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 cactgcattcattcattcat 45 |||||||||||||||||||| Sbjct: 24508 cactgcattcattcattcat 24489
>gb|AC090393.9| Homo sapiens chromosome 18, clone RP11-738B2, complete sequence Length = 184486 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 atattatttatctccctttt 309 |||||||||||||||||||| Sbjct: 122000 atattatttatctccctttt 121981
>gb|AC027238.5| Homo sapiens chromosome 8, clone RP11-377F20, complete sequence Length = 193250 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cattcattcattcatatgaa 50 |||||||||||||||||||| Sbjct: 12393 cattcattcattcatatgaa 12412
>gb|L36898.1|YSCMTCG14 Saccharomyces cerevisiae mitochondrion transfer RNA-Glu (tRNA-Glu) gene Length = 5321 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 atattatttatctccctttt 309 |||||||||||||||||||| Sbjct: 1120 atattatttatctccctttt 1139
>gb|AC013545.8| Homo sapiens chromosome 8, clone RP11-414D17, complete sequence Length = 200208 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cattcattcattcatatgaa 50 |||||||||||||||||||| Sbjct: 61148 cattcattcattcatatgaa 61129
>gb|AC022103.5| Homo sapiens chromosome 5 clone CTC-254B4, complete sequence Length = 129175 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 tttcactgcattcattcattcata 46 ||||||| |||||||||||||||| Sbjct: 39581 tttcactccattcattcattcata 39604
>emb|CR406584.1| Gallus gallus finished cDNA, clone ChEST643d13 Length = 1139 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 tccacaaaatacacaaacct 75 |||||||||||||||||||| Sbjct: 734 tccacaaaatacacaaacct 753
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cactgcattcattcattcat 45 |||||||||||||||||||| Sbjct: 21659046 cactgcattcattcattcat 21659065
>gb|AC009498.4| Homo sapiens BAC clone RP11-507C18 from 2, complete sequence Length = 199954 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cattcattcattcatatgaa 50 |||||||||||||||||||| Sbjct: 75130 cattcattcattcatatgaa 75149
>gb|AF243527.1|AF243527 Homo sapiens serine protease gene cluster, complete sequence Length = 230000 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ctgcattcattcattcatat 47 |||||||||||||||||||| Sbjct: 127387 ctgcattcattcattcatat 127368
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020D05 Length = 158760 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cactgcattcattcattcat 45 |||||||||||||||||||| Sbjct: 147996 cactgcattcattcattcat 148015
>dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0025F02 Length = 156545 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cactgcattcattcattcat 45 |||||||||||||||||||| Sbjct: 40443 cactgcattcattcattcat 40462
>emb|BX004780.4| Zebrafish DNA sequence from clone CH211-202P1 in linkage group 20, complete sequence Length = 188317 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 caaacctccaatccaaacac 88 |||||||||||||||||||| Sbjct: 6543 caaacctccaatccaaacac 6562
>gb|AF132809.1|AF132809 Drosophila virilis achaete-scute complex enhancer sequence Length = 6134 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 tctctatctgtctcaacaac 171 |||||||||||||||||||| Sbjct: 2299 tctctatctgtctcaacaac 2280
>gb|AC119809.10| Mus musculus chromosome 1, clone RP24-505E24, complete sequence Length = 154931 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 agtggcactctctctatctgtctc 165 ||||||||||||||| |||||||| Sbjct: 78413 agtggcactctctctgtctgtctc 78390
>emb|AL772301.7| Mouse DNA sequence from clone RP23-111F12 on chromosome 2, complete sequence Length = 187665 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cattcattcattcatatgaa 50 |||||||||||||||||||| Sbjct: 130690 cattcattcattcatatgaa 130709
>gb|AC004242.1|AC004242 Homo sapiens 12q13 PAC RPCI1-316M24 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 104913 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 taatgtagtagtagctccta 126 |||||||||||||||||||| Sbjct: 61102 taatgtagtagtagctccta 61121
>gb|AC141891.3| Mus musculus BAC clone RP23-378A8 from 6, complete sequence Length = 152261 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cactgcattcattcattcat 45 |||||||||||||||||||| Sbjct: 22800 cactgcattcattcattcat 22819
>emb|AL513503.2|HS297A17 Homo sapiens chromosome 9 BAC RP11-297A17, complete sequence Length = 160758 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 aagatgttttcactgcattc 35 |||||||||||||||||||| Sbjct: 82006 aagatgttttcactgcattc 82025
>gb|AC138587.11| Mus musculus chromosome 9, clone RP24-160H16, complete sequence Length = 185915 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 tctgtctcaacaacaagaac 177 |||||||||||||||||||| Sbjct: 184598 tctgtctcaacaacaagaac 184579
>emb|X01871.1|MISCORI4 Yeast mitochondrial ori(o) repeat unit of petite mutant 5 (petite strain s-10/7/2) Length = 1797 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 atattatttatctccctttt 309 |||||||||||||||||||| Sbjct: 1215 atattatttatctccctttt 1234
>emb|AL808024.4| Mouse DNA sequence from clone RP23-144L10 on chromosome X, complete sequence Length = 186528 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 agagtagaaagatgttttca 27 |||||||||||||||||||| Sbjct: 113135 agagtagaaagatgttttca 113154
>emb|AL806513.5| Mouse DNA sequence from clone RP23-480E16 on chromosome 4, complete sequence Length = 189780 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 aagatgttttcactgcattc 35 |||||||||||||||||||| Sbjct: 82016 aagatgttttcactgcattc 82035 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,332,848 Number of Sequences: 3902068 Number of extensions: 4332848 Number of successful extensions: 256364 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 256026 Number of HSP's gapped (non-prelim): 337 length of query: 407 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 385 effective length of database: 17,147,199,772 effective search space: 6601671912220 effective search space used: 6601671912220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
