>XPC_MOUSE (P51612) DNA-repair protein complementing XP-C cells homolog|
           (Xeroderma pigmentosum group C-complementing protein
           homolog) (p125)
          Length = 930

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 16/71 (22%), Positives = 28/71 (39%)
 Frame = +3

Query: 51  DDNGWWLKITRRLQRAKAMMEMTVSQTPRWW*HMIKPYTPLMKRKENMEHETGKKTKLQC 230
           D +GW   +T+R   A             WW   ++PY  L+  +E  E +  +      
Sbjct: 566 DSDGWVRDVTQRYDPAWMTATRKCRVDAEWWAETLRPYRSLLTEREKKEDQEFQAK---- 621

Query: 231 HCSSPSPVTVT 263
           H   P P +++
Sbjct: 622 HLDQPLPTSIS 632

>B2MG_ICTPU (O42197) Beta-2-microglobulin precursor|
          Length = 116

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 201 ETGKKTKLQCHCSSPSPVTVTVDLPKN 281
           E GK+  L CH S   P  +T+DL KN
Sbjct: 35  EFGKENTLICHVSDFHPPDITIDLLKN 61

>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 146  LPPSRGL*YSHLHHSFGPL*SPGNLQPPSIVISFTLVVYAEMCATNT 6
            LPP   L   H HH   P  +PG + PP++ +S    ++  + AT T
Sbjct: 1109 LPPPPNL---HGHHHHLPF-APGTIPPPNLPVSMANPLHPNLPATTT 1151

>STAG2_MOUSE (O35638) Cohesin subunit SA-2 (Stromal antigen 2) (SCC3 homolog 2)|
          Length = 1231

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 151 ICYHHLGVCDTVISIIALA-LCNLLVIFSHHPLS 53
           IC H+L   +T +   A   LC++L+IFSH  +S
Sbjct: 771 ICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMS 804

>STAG2_HUMAN (Q8N3U4) Cohesin subunit SA-2 (Stromal antigen 2) (SCC3 homolog 2)|
          Length = 1231

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 151 ICYHHLGVCDTVISIIALA-LCNLLVIFSHHPLS 53
           IC H+L   +T +   A   LC++L+IFSH  +S
Sbjct: 771 ICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMS 804

>ATP6_ALLMA (P50364) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 262

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -1

Query: 223 NFVFFPVSCSIFSFLFIKGV*GLI----ICYHHLGVCDTVISIIALALCNLLVIFSHHPL 56
           + ++FP+  + FSF+FI  + G+I        H+ V  T+   IA+ +   L+ FS H L
Sbjct: 90  SLIYFPLIFTFFSFVFISNILGMIPYSFTPTSHISV--TLGLSIAIMIGVTLIGFSKHQL 147

>ATP6_ALLAR (P50363) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 262

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -1

Query: 223 NFVFFPVSCSIFSFLFIKGV*GLI----ICYHHLGVCDTVISIIALALCNLLVIFSHHPL 56
           + ++FP+  + FSF+FI  + G+I        H+ V  T+   IA+ +   L+ FS H L
Sbjct: 90  SLIYFPLIFTFFSFVFISNILGMIPYSFTPTSHISV--TLGLSIAIMIGVTLIGFSKHQL 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,361,794
Number of Sequences: 219361
Number of extensions: 858333
Number of successful extensions: 1729
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1729
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)