ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATY1_ARATH (Q9LT02) Putative cation-transporting ATPase (EC 3.6.... 84 2e-16
2CXA5_CHICK (P18860) Gap junction alpha-5 protein (Connexin-42) (... 28 8.6

>ATY1_ARATH (Q9LT02) Putative cation-transporting ATPase (EC 3.6.3.-)|
          Length = 1179

 Score = 83.6 bits (205), Expect = 2e-16
 Identities = 34/56 (60%), Positives = 44/56 (78%)
 Frame = -2

Query: 458  LEPLPEGMRGKLLLWAMLMFCGCYGWERFLRWAFPGKMPAWEKRQKQAVANLDKKQ 291
            L PLP+G+R KLL+WA LMF  CY WER LRWAFPGK+ +W+ +Q+   ANL+KK+
Sbjct: 1122 LVPLPQGLRDKLLIWASLMFIICYSWERLLRWAFPGKISSWKHKQRAVTANLEKKK 1177



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>CXA5_CHICK (P18860) Gap junction alpha-5 protein (Connexin-42) (Cx42)|
          Length = 368

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
 Frame = +3

Query: 318 LFLSLLPCWHLAWERPSQ------KPLPSIATAKHKHSPKQQFA 431
           LFLSL   +HL W++  +      KP PS A  + + +P+ + A
Sbjct: 223 LFLSLAELYHLGWKKAKERCSRAYKPSPSTAPRRLESAPQVERA 266


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,248,287
Number of Sequences: 219361
Number of extensions: 1531293
Number of successful extensions: 3615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3613
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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