Clone Name | rbastl42g03 |
---|---|
Clone Library Name | barley_pub |
>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase) Length = 835 Score = 32.3 bits (72), Expect = 0.30 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = -2 Query: 343 SYSHGECSSSQALAVAQEAXXXXXXXXXXXSAKNFG-DPCRGVTKSLVVEAACS 185 ++ G C + ++ ++ + +NFG DPCR V K L VEA CS Sbjct: 782 NFQQGSCHAPRSYDAFKKNCVGKESCSVQVTPENFGGDPCRNVLKKLSVEAICS 835
>LEG_ANTCR (P22031) D-galactoside-specific lectin (Sea urchin egg lectin)| (SUEL) Length = 105 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -2 Query: 328 ECSSSQALAVAQEAXXXXXXXXXXXSAKNFGDPCRGVTKSLVVEAACS 185 +C SS + V + + S FGDPC G K L V CS Sbjct: 56 KCRSSNSQQVVENSCEGKSSCTVLASNSVFGDPCPGTAKYLAVTYICS 103
>HEM4_BACSU (P21248) Uroporphyrinogen-III synthase (EC 4.2.1.75) (UROS)| (Uroporphyrinogen-III cosynthetase) (Hydroxymethylbilane hydrolyase [cyclizing]) Length = 262 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +3 Query: 135 IWFRPLLPTNNIYETCHEHAASTTRLFVTPLHGSPKFFADTGTLQLLTPTH 287 I FR LP N++ E E A+ L T ++G+ FF+ QL+ P H Sbjct: 41 ITFRRALP-NDVAEQVREDLAAPGWLVFTSVNGADFFFSYLKENQLILPAH 90
>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 832 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -2 Query: 238 GDPCRGVTKSLVVEAAC 188 GDPC G K L VEA C Sbjct: 815 GDPCPGTMKKLAVEAIC 831
>TRFR_RAT (Q01717) Thyrotropin-releasing hormone receptor (TRH-R)| (Thyroliberin receptor) Length = 412 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/57 (28%), Positives = 32/57 (56%) Frame = +1 Query: 28 FTSLHCSNRFWNILFHRTSIAGTIIVSCLFVYKEEESGFAPSFLLTTFMKHVMSMQL 198 FTS++C F+ + + ++ I++SC YK + ++P +L+ + +VM M L Sbjct: 152 FTSIYCMLWFFLLDLNISTYKDAIVISC--GYKISRNYYSPIYLMDFGVFYVMPMIL 206 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,994,845 Number of Sequences: 219361 Number of extensions: 842815 Number of successful extensions: 1708 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1670 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1703 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)