ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (... 32 0.30
2LEG_ANTCR (P22031) D-galactoside-specific lectin (Sea urchin egg... 30 1.5
3HEM4_BACSU (P21248) Uroporphyrinogen-III synthase (EC 4.2.1.75) ... 28 5.6
4BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (... 28 5.6
5TRFR_RAT (Q01717) Thyrotropin-releasing hormone receptor (TRH-R)... 28 7.3

>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 835

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 343 SYSHGECSSSQALAVAQEAXXXXXXXXXXXSAKNFG-DPCRGVTKSLVVEAACS 185
           ++  G C + ++    ++            + +NFG DPCR V K L VEA CS
Sbjct: 782 NFQQGSCHAPRSYDAFKKNCVGKESCSVQVTPENFGGDPCRNVLKKLSVEAICS 835



to top

>LEG_ANTCR (P22031) D-galactoside-specific lectin (Sea urchin egg lectin)|
           (SUEL)
          Length = 105

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -2

Query: 328 ECSSSQALAVAQEAXXXXXXXXXXXSAKNFGDPCRGVTKSLVVEAACS 185
           +C SS +  V + +           S   FGDPC G  K L V   CS
Sbjct: 56  KCRSSNSQQVVENSCEGKSSCTVLASNSVFGDPCPGTAKYLAVTYICS 103



to top

>HEM4_BACSU (P21248) Uroporphyrinogen-III synthase (EC 4.2.1.75) (UROS)|
           (Uroporphyrinogen-III cosynthetase) (Hydroxymethylbilane
           hydrolyase [cyclizing])
          Length = 262

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 135 IWFRPLLPTNNIYETCHEHAASTTRLFVTPLHGSPKFFADTGTLQLLTPTH 287
           I FR  LP N++ E   E  A+   L  T ++G+  FF+     QL+ P H
Sbjct: 41  ITFRRALP-NDVAEQVREDLAAPGWLVFTSVNGADFFFSYLKENQLILPAH 90



to top

>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 832

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 238 GDPCRGVTKSLVVEAAC 188
           GDPC G  K L VEA C
Sbjct: 815 GDPCPGTMKKLAVEAIC 831



to top

>TRFR_RAT (Q01717) Thyrotropin-releasing hormone receptor (TRH-R)|
           (Thyroliberin receptor)
          Length = 412

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +1

Query: 28  FTSLHCSNRFWNILFHRTSIAGTIIVSCLFVYKEEESGFAPSFLLTTFMKHVMSMQL 198
           FTS++C   F+ +  + ++    I++SC   YK   + ++P +L+   + +VM M L
Sbjct: 152 FTSIYCMLWFFLLDLNISTYKDAIVISC--GYKISRNYYSPIYLMDFGVFYVMPMIL 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,994,845
Number of Sequences: 219361
Number of extensions: 842815
Number of successful extensions: 1708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1703
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top