>HOLB_BUCAP (Q8K9J2) DNA polymerase III delta' subunit (EC 2.7.7.7)|
          Length = 328

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 292 LSKPILNLLPGGS-FCCSCHPACMLDNNNF--WHKTVINLK 179
           +SK +L L P G+ FC +CH   ++  NN   WH T+IN K
Sbjct: 44  ISKWLLCLKPKGTNFCDNCHGCKLMSANNHPDWH-TIINEK 83

>OTU6A_MOUSE (Q6IE21) OTU domain-containing protein 6A (Hin-6 protease)|
          Length = 290

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 49  DRNTISMSRINLANLHPRGPKVAKVRQPPIHQ 144
           D  T  + ++NL N+ PR PK  K R    HQ
Sbjct: 75  DSVTADLEKMNLENMPPRPPKAQKRRDRRAHQ 106

>AT1A1_CHICK (P09572) Sodium/potassium-transporting ATPase alpha-1 chain|
           precursor (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1)
          Length = 1021

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 404 YLFVVILHMVEGQNLSPQLQ*GLAMVCCLAATGCYDYFVEA 282
           +L   I  ++EG+  S  L  G+ +   +  TGC+ Y+ EA
Sbjct: 110 FLAYGITSVMEGEPNSDNLYLGVVLAAVVIITGCFSYYQEA 150

>TRIO_HUMAN (O75962) Triple functional domain protein (PTPRF-interacting|
           protein)
          Length = 3038

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 286 KPILNLLPGGSFCCSCHPACMLDNNNFWHKTVIN 185
           KP+L +L   SF C  H A ++  +NFW K   N
Sbjct: 80  KPLLKILQE-SFPCCIHVALIIKPDNFWQKQRTN 112

>KR410_HUMAN (Q9BYQ7) Keratin-associated protein 4-10 (Keratin-associated|
           protein 4.10) (Ultrahigh sulfur keratin-associated
           protein 4.10)
          Length = 127

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +1

Query: 211 CCCPTCMQDDNCNKKNHQATNSRSASTK*S-*HPVAAKQQTMAKPHCNWGERF*PSTICK 387
           CCCP+C+    C     Q T  ++   + S   PV    QT  +P C       P  +C 
Sbjct: 34  CCCPSCVVSSCCRPSCSQTTCCQTTCCRPSCCRPVCC--QTTCRPSCGVSSCCRP--LCC 89

Query: 388 MTTNR 402
            TT R
Sbjct: 90  QTTCR 94

>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6|
          Length = 1268

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +1

Query: 220 PTCMQDDNCNKKNHQATNSRS 282
           PTC     CNKK H ATN RS
Sbjct: 239 PTCFY---CNKKGHYATNCRS 256

>CY24B_HUMAN (P04839) Cytochrome b-245 heavy chain (p22 phagocyte B-cytochrome)|
           (Neutrophil cytochrome b 91 kDa polypeptide)
           (CGD91-phox) (gp91-phox) (gp91-1) (Heme-binding membrane
           glycoprotein gp91phox) (Cytochrome b(558) beta chain)
           (Cytochrome b558 be
          Length = 569

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 304 VTIILSKPILNLLPGGSFCCSCHPACMLDNNNFWHKTV 191
           + + + + +L+ L G S CCS      LD N  +HK V
Sbjct: 66  ILLPVCRNLLSFLRGSSACCSTRVRRQLDRNLTFHKMV 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,169,099
Number of Sequences: 219361
Number of extensions: 1242667
Number of successful extensions: 3182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3181
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)