ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Z95400.2|HS393P23 Human DNA sequence from clone RP3-393P23 o... 46 0.061
2gb|AC092372.3| Homo sapiens chromosome 5 clone RP11-58M12, compl... 44 0.24
3gb|AC022121.6| Homo sapiens chromosome 5 clone CTD-2007H13, comp... 44 0.24
4gb|AC012624.6| Homo sapiens chromosome 5 clone CTD-2082I17, comp... 44 0.24
5gb|AC026778.4|AC026778 Homo sapiens chromosome 5 clone CTC-428I1... 44 0.24
6gb|AC019233.7|AC019233 Homo sapiens clone RP11-631O4, complete s... 44 0.24
7ref|XM_341326.2| PREDICTED: Rattus norvegicus ADP-ribosyltransfe... 42 0.95
8gb|AC164110.4| Mus musculus BAC clone RP23-307N19 from chromosom... 40 3.8
9gb|AC116812.10| Mus musculus chromosome 15, clone RP24-357G13, c... 40 3.8
10gb|AC134596.3| Mus musculus BAC clone RP23-435C1 from chromosome... 40 3.8
11ref|XM_534542.2| PREDICTED: Canis familiaris similar to Poly [AD... 40 3.8
12gb|AC182032.3| Spermophilus tridecemlineatus clone VMRC20-712F8,... 40 3.8
13gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, comple... 40 3.8
14emb|BX005425.12| Zebrafish DNA sequence from clone DKEY-7O6 in l... 40 3.8
15gb|AC103408.8| Mus musculus chromosome 3, clone RP23-442M1, comp... 40 3.8
16emb|AL808123.9| Mouse DNA sequence from clone RP23-73K21 on chro... 40 3.8

>emb|Z95400.2|HS393P23 Human DNA sequence from clone RP3-393P23 on chromosome Xq21.1-21.33
             Contains the 5' end of the KLHL4 gene for kelch-like 4
             (Drosophila), complete sequence
          Length = 133120

 Score = 46.1 bits (23), Expect = 0.061
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 259   cttttttggaaacttgtatgttttctt 285
             ||||||||||||||||||||| |||||
Sbjct: 56195 cttttttggaaacttgtatgtcttctt 56221



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>gb|AC092372.3| Homo sapiens chromosome 5 clone RP11-58M12, complete sequence
          Length = 101220

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 146   gactacttaattttttcttcac 167
             ||||||||||||||||||||||
Sbjct: 27387 gactacttaattttttcttcac 27408



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>gb|AC022121.6| Homo sapiens chromosome 5 clone CTD-2007H13, complete sequence
          Length = 219258

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 146   gactacttaattttttcttcac 167
             ||||||||||||||||||||||
Sbjct: 89905 gactacttaattttttcttcac 89926



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>gb|AC012624.6| Homo sapiens chromosome 5 clone CTD-2082I17, complete sequence
          Length = 134365

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 146    gactacttaattttttcttcac 167
              ||||||||||||||||||||||
Sbjct: 117792 gactacttaattttttcttcac 117771



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>gb|AC026778.4|AC026778 Homo sapiens chromosome 5 clone CTC-428I11, complete sequence
          Length = 195433

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 146   gactacttaattttttcttcac 167
             ||||||||||||||||||||||
Sbjct: 30187 gactacttaattttttcttcac 30208



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>gb|AC019233.7|AC019233 Homo sapiens clone RP11-631O4, complete sequence
          Length = 263876

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 236   cagcagacatacacaaatcaaa 257
             ||||||||||||||||||||||
Sbjct: 29444 cagcagacatacacaaatcaaa 29465



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>ref|XM_341326.2| PREDICTED: Rattus norvegicus ADP-ribosyltransferase (NAD+; poly
            (ADP-ribose) polymerase)-like 1 (predicted)
            (Adprtl1_predicted), mRNA
          Length = 6335

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 239  cagacatacacaaatcaaagc 259
            |||||||||||||||||||||
Sbjct: 2938 cagacatacacaaatcaaagc 2958



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>gb|AC164110.4| Mus musculus BAC clone RP23-307N19 from chromosome 12, complete
            sequence
          Length = 201050

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  gcacaaacatgagaactgga 196
            ||||||||||||||||||||
Sbjct: 3272 gcacaaacatgagaactgga 3253



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>gb|AC116812.10| Mus musculus chromosome 15, clone RP24-357G13, complete sequence
          Length = 183993

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tttattcacacatgagtata 40
             ||||||||||||||||||||
Sbjct: 37457 tttattcacacatgagtata 37438



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>gb|AC134596.3| Mus musculus BAC clone RP23-435C1 from chromosome 12, complete sequence
          Length = 193068

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    gcacaaacatgagaactgga 196
              ||||||||||||||||||||
Sbjct: 104948 gcacaaacatgagaactgga 104967



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>ref|XM_534542.2| PREDICTED: Canis familiaris similar to Poly [ADP-ribose]
           polymerase-4 (PARP-4) (Vault poly(ADP-ribose)
           polymerase) (VPARP) (193-kDa vault protein)
           (PARP-related/IalphaI-related H5/proline-rich) (PH5P)
           (LOC477348), mRNA
          Length = 6876

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 239 cagacatacacaaatcaaag 258
           ||||||||||||||||||||
Sbjct: 973 cagacatacacaaatcaaag 992



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>gb|AC182032.3| Spermophilus tridecemlineatus clone VMRC20-712F8, complete sequence
          Length = 172253

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   aaacttgtatgttttcttga 287
             ||||||||||||||||||||
Sbjct: 61955 aaacttgtatgttttcttga 61936



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>gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, complete sequence
          Length = 169106

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    atctgactacttaatttttt 161
              ||||||||||||||||||||
Sbjct: 127879 atctgactacttaatttttt 127860



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>emb|BX005425.12| Zebrafish DNA sequence from clone DKEY-7O6 in linkage group 8, complete
              sequence
          Length = 252440

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 242    acatacacaaatcaaagctttttt 265
              ||||||||||| ||||||||||||
Sbjct: 219507 acatacacaaaacaaagctttttt 219484



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>gb|AC103408.8| Mus musculus chromosome 3, clone RP23-442M1, complete sequence
          Length = 187860

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   aaatcaaagcttttttggaa 269
             ||||||||||||||||||||
Sbjct: 63489 aaatcaaagcttttttggaa 63508



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>emb|AL808123.9| Mouse DNA sequence from clone RP23-73K21 on chromosome 2, complete
             sequence
          Length = 158637

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   tacacaaatcaaagcttttt 264
             ||||||||||||||||||||
Sbjct: 99510 tacacaaatcaaagcttttt 99529


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,916,465
Number of Sequences: 3902068
Number of extensions: 2916465
Number of successful extensions: 56821
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56785
Number of HSP's gapped (non-prelim): 36
length of query: 287
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 265
effective length of database: 17,147,199,772
effective search space: 4544007939580
effective search space used: 4544007939580
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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