Clone Name | rbastl42f11 |
---|---|
Clone Library Name | barley_pub |
>emb|Z95400.2|HS393P23 Human DNA sequence from clone RP3-393P23 on chromosome Xq21.1-21.33 Contains the 5' end of the KLHL4 gene for kelch-like 4 (Drosophila), complete sequence Length = 133120 Score = 46.1 bits (23), Expect = 0.061 Identities = 26/27 (96%) Strand = Plus / Plus Query: 259 cttttttggaaacttgtatgttttctt 285 ||||||||||||||||||||| ||||| Sbjct: 56195 cttttttggaaacttgtatgtcttctt 56221
>gb|AC092372.3| Homo sapiens chromosome 5 clone RP11-58M12, complete sequence Length = 101220 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 146 gactacttaattttttcttcac 167 |||||||||||||||||||||| Sbjct: 27387 gactacttaattttttcttcac 27408
>gb|AC022121.6| Homo sapiens chromosome 5 clone CTD-2007H13, complete sequence Length = 219258 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 146 gactacttaattttttcttcac 167 |||||||||||||||||||||| Sbjct: 89905 gactacttaattttttcttcac 89926
>gb|AC012624.6| Homo sapiens chromosome 5 clone CTD-2082I17, complete sequence Length = 134365 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 146 gactacttaattttttcttcac 167 |||||||||||||||||||||| Sbjct: 117792 gactacttaattttttcttcac 117771
>gb|AC026778.4|AC026778 Homo sapiens chromosome 5 clone CTC-428I11, complete sequence Length = 195433 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 146 gactacttaattttttcttcac 167 |||||||||||||||||||||| Sbjct: 30187 gactacttaattttttcttcac 30208
>gb|AC019233.7|AC019233 Homo sapiens clone RP11-631O4, complete sequence Length = 263876 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 236 cagcagacatacacaaatcaaa 257 |||||||||||||||||||||| Sbjct: 29444 cagcagacatacacaaatcaaa 29465
>ref|XM_341326.2| PREDICTED: Rattus norvegicus ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 (predicted) (Adprtl1_predicted), mRNA Length = 6335 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 cagacatacacaaatcaaagc 259 ||||||||||||||||||||| Sbjct: 2938 cagacatacacaaatcaaagc 2958
>gb|AC164110.4| Mus musculus BAC clone RP23-307N19 from chromosome 12, complete sequence Length = 201050 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gcacaaacatgagaactgga 196 |||||||||||||||||||| Sbjct: 3272 gcacaaacatgagaactgga 3253
>gb|AC116812.10| Mus musculus chromosome 15, clone RP24-357G13, complete sequence Length = 183993 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tttattcacacatgagtata 40 |||||||||||||||||||| Sbjct: 37457 tttattcacacatgagtata 37438
>gb|AC134596.3| Mus musculus BAC clone RP23-435C1 from chromosome 12, complete sequence Length = 193068 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 gcacaaacatgagaactgga 196 |||||||||||||||||||| Sbjct: 104948 gcacaaacatgagaactgga 104967
>ref|XM_534542.2| PREDICTED: Canis familiaris similar to Poly [ADP-ribose] polymerase-4 (PARP-4) (Vault poly(ADP-ribose) polymerase) (VPARP) (193-kDa vault protein) (PARP-related/IalphaI-related H5/proline-rich) (PH5P) (LOC477348), mRNA Length = 6876 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 cagacatacacaaatcaaag 258 |||||||||||||||||||| Sbjct: 973 cagacatacacaaatcaaag 992
>gb|AC182032.3| Spermophilus tridecemlineatus clone VMRC20-712F8, complete sequence Length = 172253 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 aaacttgtatgttttcttga 287 |||||||||||||||||||| Sbjct: 61955 aaacttgtatgttttcttga 61936
>gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, complete sequence Length = 169106 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 atctgactacttaatttttt 161 |||||||||||||||||||| Sbjct: 127879 atctgactacttaatttttt 127860
>emb|BX005425.12| Zebrafish DNA sequence from clone DKEY-7O6 in linkage group 8, complete sequence Length = 252440 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 acatacacaaatcaaagctttttt 265 ||||||||||| |||||||||||| Sbjct: 219507 acatacacaaaacaaagctttttt 219484
>gb|AC103408.8| Mus musculus chromosome 3, clone RP23-442M1, complete sequence Length = 187860 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 aaatcaaagcttttttggaa 269 |||||||||||||||||||| Sbjct: 63489 aaatcaaagcttttttggaa 63508
>emb|AL808123.9| Mouse DNA sequence from clone RP23-73K21 on chromosome 2, complete sequence Length = 158637 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 tacacaaatcaaagcttttt 264 |||||||||||||||||||| Sbjct: 99510 tacacaaatcaaagcttttt 99529 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,916,465 Number of Sequences: 3902068 Number of extensions: 2916465 Number of successful extensions: 56821 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56785 Number of HSP's gapped (non-prelim): 36 length of query: 287 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 265 effective length of database: 17,147,199,772 effective search space: 4544007939580 effective search space used: 4544007939580 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)