Clone Information

BLAST Search Result

Clone Name	rbastl42f09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MYSP_SCHJA (Q05870) Paramyosin (Antigen Sj97)	39	0.003
2	MYSP_SCHMA (P06198) Paramyosin	36	0.025
3	MYSP_OPIFE (Q9BMQ6) Paramyosin (Fragment)	33	0.13
4	RRBP1_CANFA (Q28298) Ribosome-binding protein 1 (180 kDa ribosom...	33	0.16
5	MYS3_HYDAT (P39922) Myosin heavy chain, clone 203 (Fragment)	32	0.48
6	YABA_BACCR (Q81JB2) Initiation-control protein yabA	32	0.48
7	PCNT_HUMAN (O95613) Pericentrin (Pericentrin B) (Kendrin)	30	1.1
8	RAD50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase	30	1.4
9	AKAP9_RABIT (Q28628) A-kinase anchor protein 9 (Protein kinase A...	30	1.4
10	RRBP1_HUMAN (Q9P2E9) Ribosome-binding protein 1 (Ribosome recept...	30	1.4
11	HSF2_ARATH (Q9SCW5) Heat shock factor protein 2 (HSF 2) (Heat sh...	29	2.4
12	TMCC2_MOUSE (Q80W04) Transmembrane and coiled-coil domains prote...	29	2.4
13	VB18_VACCV (Q01222) Ankyrin repeat protein B18	29	2.4
14	VB18_VACCC (P21076) Ankyrin repeat protein B18	29	2.4
15	VB18_VACCA (O57263) Ankyrin repeat protein B18	29	2.4
16	DOT1L_DROME (Q8INR6) Histone-lysine N-methyltransferase, H3 lysi...	29	2.4
17	TMCC2_HUMAN (O75069) Transmembrane and coiled-coil domains prote...	29	2.4
18	CEBPB_HUMAN (P17676) CCAAT/enhancer-binding protein beta (C/EBP ...	29	3.1
19	CEBP_DROVI (Q02638) CCAAT/enhancer-binding protein (C/EBP) (Slow...	29	3.1
20	CARA_SYNEL (Q8DKU5) Carbamoyl-phosphate synthase small chain (EC...	28	4.1
21	MYO5C_HUMAN (Q9NQX4) Myosin-5C (Myosin Vc)	28	4.1
22	TAF1_TOBAC (Q99142) Transcriptional activator TAF-1 (Fragment)	28	4.1
23	HEX9_ADET1 (P04376) Hexon-associated protein (Protein IX) (pIX)	28	4.1
24	CEBPB_BOVIN (O02755) CCAAT/enhancer-binding protein beta (C/EBP ...	28	4.1
25	SPO15_SCHPO (Q10411) Sporulation-specific protein 15	28	4.1
26	FBX18_MOUSE (Q8K2I9) F-box only protein 18 (EC 3.6.1.-) (F-box D...	28	4.1
27	RRBP1_MOUSE (Q99PL5) Ribosome-binding protein 1 (Ribosome recept...	28	4.1
28	MYSP_ONCVO (Q02171) Paramyosin	28	5.3
29	Y864_MYCCT (P43047) Hypothetical protein MCAP_0864 precursor (OR...	28	5.3
30	MYO5B_HUMAN (Q9ULV0) Myosin-5B (Myosin Vb)	28	5.3
31	FBX18_HUMAN (Q8NFZ0) F-box only protein 18 (EC 3.6.1.-) (F-box D...	28	5.3
32	RNS_ECOLI (P16114) Regulatory protein rns	28	5.3
33	CFAD_ECOLI (P25393) CFA/I fimbrial subunit D (Colonization facto...	28	5.3
34	CASP_MOUSE (P70403) Protein CASP	28	5.3
35	MYSP_BRUMA (Q01202) Paramyosin	28	5.3
36	YMDA_BACSU (O31774) UPF0144 protein ymdA	28	5.3
37	MYSP_DIRIM (P13392) Paramyosin (Fragment)	28	5.3
38	CUTL1_MOUSE (P53564) Homeobox protein cut-like 1 (CCAAT displace...	28	5.3
39	CEBPB_CHICK (Q05826) CCAAT/enhancer-binding protein beta (C/EBP ...	28	5.3
40	HMDH_STRPU (P16393) 3-hydroxy-3-methylglutaryl-coenzyme A reduct...	28	6.9
41	MYS_AEQIR (P24733) Myosin heavy chain, striated muscle	28	6.9
42	CARA_PORPU (P51201) Carbamoyl-phosphate synthase small chain (EC...	28	6.9
43	MYO5A_CHICK (Q02440) Myosin-5A (Myosin Va) (Dilute myosin heavy ...	28	6.9
44	KIF4A_MOUSE (P33174) Chromosome-associated kinesin KIF4A (Chromo...	28	6.9
45	CEBPB_RAT (P21272) CCAAT/enhancer-binding protein beta (C/EBP be...	28	6.9
46	SCA_DROME (P21520) Protein scabrous precursor	28	6.9
47	PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteaso...	27	9.0
48	VB18_VARV (P33824) Ankyrin repeat protein B18	27	9.0
49	IFEA_ASCSU (P23730) Intermediate filament protein A (IF-A) (Frag...	27	9.0
50	CP135_MOUSE (Q6P5D4) Centrosomal protein of 135 kDa (Cep135 prot...	27	9.0
51	CEBPB_MOUSE (P28033) CCAAT/enhancer-binding protein beta (C/EBP ...	27	9.0
52	SAS6_CHICK (Q5ZMV2) Spindle assembly abnormal protein 6 homolog	27	9.0
53	CARA_LISMO (Q8Y664) Carbamoyl-phosphate synthase small chain (EC...	27	9.0
54	CARA_LISMF (Q71YI0) Carbamoyl-phosphate synthase small chain (EC...	27	9.0
55	CARA_LISIN (Q92AH2) Carbamoyl-phosphate synthase small chain (EC...	27	9.0

>MYSP_SCHJA (Q05870) Paramyosin (Antigen Sj97)|
          Length = 866

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
 Frame = -1

Query: 389 REKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQ-------INGLSKKDERLRREH 237
           R K  ES   +LQR V EL  EV  L  +NNQLE +       +N L+ K+  L RE+
Sbjct: 361 RAKSAESLASELQRRVDELTIEVNTLTSQNNQLESENMRLKSLVNDLTDKNNALEREN 418

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>MYSP_SCHMA (P06198) Paramyosin|
          Length = 866

 Score = 35.8 bits (81), Expect = 0.025
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -1

Query: 389 REKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQ-------INGLSKKDERLRREH 237
           R K  ES    LQR V EL  EV  L  +N+QLE +       +N L+ K+  L RE+
Sbjct: 361 RAKAAESLASDLQRRVDELTIEVNTLTSQNSQLESENLRLKSLVNDLTDKNNLLEREN 418

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>MYSP_OPIFE (Q9BMQ6) Paramyosin (Fragment)|
          Length = 638

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = -1

Query: 389 REKGLESYVVQLQRSVTELAEEVQRLKLRNNQLE-------HQINGLSKKDERLRREH 237
           R K  E+    LQR V EL  E+  L  +N+QLE        Q+N L  K+  L RE+
Sbjct: 342 RAKAAENLANDLQRRVDELTIEINNLHSQNSQLEAENMRLKSQVNDLVDKNAALDREN 399

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>RRBP1_CANFA (Q28298) Ribosome-binding protein 1 (180 kDa ribosome receptor) (RRp)|
          Length = 1534

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = -1

Query: 392  AREKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQ 282
            AR K LES V  L++  TEL E V++ K++NN L  +
Sbjct: 1116 ARLKELESQVWCLEKEATELKEAVEQQKVKNNDLREK 1152



 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = -1

Query: 392  AREKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQI-NGLSKKDERLRREHS 234
            ARE+ + +   +++ S  E  +EVQ+L+ +   L+ Q+ NG + +  RL++E+S
Sbjct: 882  AREQEITAVQARIEASYREHVKEVQQLQGKIRTLQEQLENGPNTQLARLQQENS 935

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>MYS3_HYDAT (P39922) Myosin heavy chain, clone 203 (Fragment)|
          Length = 539

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -1

Query: 386 EKGLESYVVQLQRSVTELAEEVQRL--KLRNNQLEHQINGLSKKDERLRREHSTKQ 225
           ++GLES + QLQR + EL  +++ L  +L N +   Q + L +K+   R E    Q
Sbjct: 297 KEGLESQISQLQRKIQELLAKIEELEEELENERKLRQKSELQRKELESRIEELQDQ 352

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>YABA_BACCR (Q81JB2) Initiation-control protein yabA|
          Length = 116

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 359 QLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDER 252
           +L++ + EL EE Q +K+ NN L H+   +  K+++
Sbjct: 26  ELKQHLAELLEENQHIKMENNNLRHRFEEVQNKEKQ 61

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>PCNT_HUMAN (O95613) Pericentrin (Pericentrin B) (Kendrin)|
          Length = 3336

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = -1

Query: 392 AREKGLES-YVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSK-KDERLRREHS 234
           AR  GLE+ + VQL    TEL EE++ LK+ N  L  ++   ++ KD+  + +H+
Sbjct: 668 ARVLGLETEHKVQLSLLQTELKEEIELLKIENRNLYEKLQHETRLKDDLEKVKHN 722

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>RAD50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase|
          Length = 880

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -1

Query: 389 REKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERLRR 243
           R+KGLE  +VQ++RS+ E   ++  L+    ++   I  L +K++  R+
Sbjct: 257 RKKGLEEKIVQIERSIEEKKAKISELE----EIVKDIPKLQEKEKEYRK 301

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>AKAP9_RABIT (Q28628) A-kinase anchor protein 9 (Protein kinase A-anchoring|
           protein 9) (PRKA9) (A-kinase anchor protein 120 kDa)
           (AKAP 120) (Fragment)
          Length = 1087

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 359 QLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERLRREHS 234
           QLQR V E  EE+++L+ R  +LE  +  +    +R R  +S
Sbjct: 151 QLQRDVQERNEEIEKLECRVRELEQALLSVQTLSKRWRTRNS 192

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>RRBP1_HUMAN (Q9P2E9) Ribosome-binding protein 1 (Ribosome receptor protein) (180|
            kDa ribosome receptor homolog) (ES/130-related protein)
          Length = 1410

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 389  REKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQ 282
            R K LES V  L++   EL E V++ K++NN L  +
Sbjct: 988  RLKELESQVSGLEKEAIELREAVEQQKVKNNDLREK 1023



 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = -1

Query: 392 AREKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQI-NGLSKKDERLRREHS 234
           ARE+ + +   ++Q S  E  +EVQ+L+ +   L+ Q+ NG + +  RL++E+S
Sbjct: 750 AREQEITAVQARMQASYREHVKEVQQLQGKIRTLQEQLENGPNTQLARLQQENS 803

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>HSF2_ARATH (Q9SCW5) Heat shock factor protein 2 (HSF 2) (Heat shock|
           transcription factor 2) (HSTF 2)
          Length = 468

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 380 GLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKK 261
           GLE  V +LQR    L +E+ RL+ +    EH +  + +K
Sbjct: 141 GLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQK 180

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>TMCC2_MOUSE (Q80W04) Transmembrane and coiled-coil domains protein 2|
          Length = 706

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 386 EKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSK 264
           E  +E    QLQR  T + + +Q  + R  +LE Q+N L++
Sbjct: 531 EDSMEDLKTQLQRDYTYMTQCLQEERYRYERLEEQLNDLTE 571

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>VB18_VACCV (Q01222) Ankyrin repeat protein B18|
          Length = 574

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +2

Query: 26  LTDNTKHAVQI-----KNVYYNVNELANILTITIDTPT*FRNVIQLISLTRFKI 172
           LTDN KHA Q+     +N  Y +N L  IL   +D       V QL SL  F I
Sbjct: 357 LTDNNKHATQLIIDNKENSPYTINCLLYILRYIVDKNVIRSLVDQLPSLPIFDI 410

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>VB18_VACCC (P21076) Ankyrin repeat protein B18|
          Length = 574

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +2

Query: 26  LTDNTKHAVQI-----KNVYYNVNELANILTITIDTPT*FRNVIQLISLTRFKI 172
           LTDN KHA Q+     +N  Y +N L  IL   +D       V QL SL  F I
Sbjct: 357 LTDNNKHATQLIIDNKENSPYTINCLLYILRYIVDKNVIRSLVDQLPSLPIFDI 410

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>VB18_VACCA (O57263) Ankyrin repeat protein B18|
          Length = 574

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +2

Query: 26  LTDNTKHAVQI-----KNVYYNVNELANILTITIDTPT*FRNVIQLISLTRFKI 172
           LTDN KHA Q+     +N  Y +N L  IL   +D       V QL SL  F I
Sbjct: 357 LTDNNKHATQLIIDNKENSPYTINCLLYILRYIVDKNVIRSLVDQLPSLPIFDI 410

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>DOT1L_DROME (Q8INR6) Histone-lysine N-methyltransferase, H3 lysine-79 specific|
           (EC 2.1.1.43) (Histone H3-K79 methyltransferase)
           (H3-K79-HMTase) (Protein grappa) (DOT1-like protein)
           (dDOT1L)
          Length = 1848

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 371 SYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGL 270
           +YV Q+Q+ + +  E + RLK R +QL+ QI  L
Sbjct: 680 AYVPQVQKQIAQEQERMARLKNRASQLDKQIKVL 713

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>TMCC2_HUMAN (O75069) Transmembrane and coiled-coil domains protein 2 (Cerebral|
           protein 11)
          Length = 709

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 386 EKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSK 264
           E  +E    QLQR  T + + +Q  + R  +LE Q+N L++
Sbjct: 534 EDSMEDLKTQLQRDYTYMTQCLQEERYRYERLEEQLNDLTE 574

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>CEBPB_HUMAN (P17676) CCAAT/enhancer-binding protein beta (C/EBP beta) (Nuclear|
           factor NF-IL6) (Transcription factor 5)
          Length = 345

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/49 (22%), Positives = 31/49 (63%)
 Frame = -1

Query: 386 EKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERLRRE 240
           +K  + Y ++ +R+   + +   + K+RN + +H++  L+ ++ERL+++
Sbjct: 268 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 316

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>CEBP_DROVI (Q02638) CCAAT/enhancer-binding protein (C/EBP) (Slow border cell|
           protein)
          Length = 451

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/51 (25%), Positives = 30/51 (58%)
 Frame = -1

Query: 386 EKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERLRREHS 234
           +KG E Y  + +R+   + +  ++ K+R+ ++E ++  L K+ + L R+ S
Sbjct: 362 DKGTEEYRRRRERNNIAVRKSREKAKVRSKEVEERVKSLLKEKDALLRQLS 412

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>CARA_SYNEL (Q8DKU5) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 382

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 170 IGELSYTTGTTGNKYIIIIASYYALFATF 256
           IGE+ + TG TG + ++   SYY    TF
Sbjct: 27  IGEVVFNTGMTGYQEVLTDPSYYGQIVTF 55

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>MYO5C_HUMAN (Q9NQX4) Myosin-5C (Myosin Vc)|
          Length = 1742

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 386  EKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERLRRE 240
            EK  E      ++ +  L EE++ LK    QL+H + G     + L+ E
Sbjct: 1012 EKSFELKTQDYEKQIQSLKEEIKALKDEKMQLQHLVEGEHVTSDGLKAE 1060

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>TAF1_TOBAC (Q99142) Transcriptional activator TAF-1 (Fragment)|
          Length = 265

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 353 QRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERLRREHS 234
           Q    ELA  VQ L   N  L+ +IN L +  E+L+ E++
Sbjct: 216 QAEAEELAIRVQSLTAENMTLKSEINKLMENSEKLKLENA 255

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>HEX9_ADET1 (P04376) Hexon-associated protein (Protein IX) (pIX)|
          Length = 122

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 362 VQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERLR 246
           + L RSVTEL E +  L+ +  +LE ++  + +K E ++
Sbjct: 66  LNLLRSVTELNESIDELQQKMTELEKRLKIMEEKIEEIK 104

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>CEBPB_BOVIN (O02755) CCAAT/enhancer-binding protein beta (C/EBP beta)|
          Length = 348

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/49 (22%), Positives = 31/49 (63%)
 Frame = -1

Query: 386 EKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERLRRE 240
           +K  + Y ++ +R+   + +   + K+RN + +H++  L+ ++ERL+++
Sbjct: 271 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTGENERLQKK 319

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>SPO15_SCHPO (Q10411) Sporulation-specific protein 15|
          Length = 1957

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 383  KGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERL 249
            K  ES ++ L+ S++   ++   L    N+LEH ++  S+K+  L
Sbjct: 1414 KEKESLIISLEESLSNQRQKESSLLDAKNELEHMLDDTSRKNSSL 1458



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -1

Query: 383  KGLESYVVQLQRSVTELAEEVQR----LKLRNNQLEHQINGLSKKDERLRREHST 231
            + L+  +  +Q    EL +EV R    ++ R+++ EH    L K   +L  +H T
Sbjct: 1670 ESLQDVLTSVQARNAELEDEVSRSVDKIRRRDDRCEHLSGKLKKLHSQLEEQHET 1724

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>FBX18_MOUSE (Q8K2I9) F-box only protein 18 (EC 3.6.1.-) (F-box DNA helicase 1)|
          Length = 1042

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 277 MGCRKKTKGCEESIVRSNDNDIFIPCSPRCITQLPNF 167
           +G   K KG E   V   D+ + +PC+   + QLP+F
Sbjct: 868 LGTVHKAKGLEFDTVHVLDDFVKVPCARHNLAQLPHF 904

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>RRBP1_MOUSE (Q99PL5) Ribosome-binding protein 1 (Ribosome receptor protein)|
            (mRRp)
          Length = 1605

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = -1

Query: 392  AREKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQI-NGLSKKDERLRREHS 234
            ARE+ + +   ++Q S  +  +EVQ+L+ +   L+ Q+ NG + +  RL++E+S
Sbjct: 953  AREQEIAAVQARMQASYRDHVKEVQQLQGKIRTLQEQLENGPNTQLARLQQENS 1006



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 389  REKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQ 282
            R K LES V  L++  +EL E +++ K +NN L  +
Sbjct: 1188 RLKELESQVSCLEKETSELKEAMEQQKGKNNDLREK 1223

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>MYSP_ONCVO (Q02171) Paramyosin|
          Length = 879

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 377 LESYVVQLQRSVTELAEEVQRLKLRNNQLEHQIN 276
           L + V  L R V +LA++ QRL+  NN L  +I+
Sbjct: 191 LSNKVEDLNRHVNDLAQQRQRLQAENNDLLKEIH 224

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>Y864_MYCCT (P43047) Hypothetical protein MCAP_0864 precursor (ORF R8)|
          Length = 470

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -1

Query: 383 KGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERL 249
           K LES   QLQ  + E+ ++  + +    QLE ++  LSK+ +RL
Sbjct: 389 KKLESERTQLQTKLDEIIKQNTQKEELIKQLEKELEKLSKRTQRL 433

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>MYO5B_HUMAN (Q9ULV0) Myosin-5B (Myosin Vb)|
          Length = 1849

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = -1

Query: 380  GLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERLRRE 240
            G+E+ VVQLQR + E  +E + L   + QL    +  + + ERL++E
Sbjct: 922  GMENKVVQLQRKIDEQNKEFKTL---SEQLSVTTSTYTMEVERLKKE 965

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>FBX18_HUMAN (Q8NFZ0) F-box only protein 18 (EC 3.6.1.-) (F-box DNA helicase 1)|
          Length = 1043

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 277 MGCRKKTKGCEESIVRSNDNDIFIPCSPRCITQLPNF 167
           +G   K KG E   V   D+ + +PC+   + QLP+F
Sbjct: 869 LGTVHKAKGLEFDTVHVLDDFVKVPCARHNLPQLPHF 905

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>RNS_ECOLI (P16114) Regulatory protein rns|
          Length = 265

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 201 QGINISLSLLRTMLSSQPFVFFRQPIDLMLKL 296
           +G+NIS+ + + +LS +P+V FR   D++  L
Sbjct: 53  RGVNISVRMQKQILSEKPYVAFRLNGDMLRHL 84

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>CFAD_ECOLI (P25393) CFA/I fimbrial subunit D (Colonization factor antigen I|
           subunit D)
          Length = 265

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 201 QGINISLSLLRTMLSSQPFVFFRQPIDLMLKL 296
           +G+NIS+ + + +LS +P+V FR   D++  L
Sbjct: 53  RGVNISVRIQKKILSERPYVAFRLNGDILRHL 84

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>CASP_MOUSE (P70403) Protein CASP|
          Length = 678

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 15/59 (25%)
 Frame = -1

Query: 377 LESYVVQLQRSVTELAEEVQRL-----KLRNN------QLEHQING----LSKKDERLR 246
           LE  +   +R + +L E+VQRL     KLR N      QLE Q+N     L + +E+L+
Sbjct: 299 LEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAKNSTLKQLEEKLK 357

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>MYSP_BRUMA (Q01202) Paramyosin|
          Length = 880

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 377 LESYVVQLQRSVTELAEEVQRLKLRNNQLEHQIN 276
           L + V  L R V +LA++ QRL+  NN L  +I+
Sbjct: 191 LSNKVEDLNRHVNDLAQQRQRLQAENNDLLKEIH 224

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>YMDA_BACSU (O31774) UPF0144 protein ymdA|
          Length = 520

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
 Frame = -1

Query: 353 QRSVTELAEEVQRLKL--------RNNQLEHQINGLSKKDERLRREH 237
           + ++ E  +E+ +L++        R N+L+ Q N L +K+E L R+H
Sbjct: 56  KEALLEAKDEIHKLRIDAEQEVRERRNELQKQENRLLQKEENLDRKH 102

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>MYSP_DIRIM (P13392) Paramyosin (Fragment)|
          Length = 848

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 377 LESYVVQLQRSVTELAEEVQRLKLRNNQLEHQIN 276
           L + V  L R V +LA++ QRL+  NN L  +I+
Sbjct: 164 LSNKVEDLNRHVNDLAQQRQRLQAENNDLLKEIH 197

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>CUTL1_MOUSE (P53564) Homeobox protein cut-like 1 (CCAAT displacement protein)|
           (CDP) (Homeobox protein Cux)
          Length = 1515

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 15/59 (25%)
 Frame = -1

Query: 377 LESYVVQLQRSVTELAEEVQRL-----KLRNN------QLEHQING----LSKKDERLR 246
           LE  +   +R + +L E+VQRL     KLR N      QLE Q+N     L + +E+L+
Sbjct: 286 LEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAKNSTLKQLEEKLK 344

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>CEBPB_CHICK (Q05826) CCAAT/enhancer-binding protein beta (C/EBP beta)|
           (Transcription factor NF-M) (CCR protein)
          Length = 328

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/49 (22%), Positives = 31/49 (63%)
 Frame = -1

Query: 386 EKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERLRRE 240
           +K  + Y ++ +R+   + +   + K+RN + +H++  L+ ++ERL+++
Sbjct: 251 DKHSDEYKLRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 299

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>HMDH_STRPU (P16393) 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC|
           1.1.1.34) (HMG-CoA reductase)
          Length = 932

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +2

Query: 197 TTGNKYIIIIASYYALFATFRLFST 271
           TTG+KYI+ IA  + +F++F LFS+
Sbjct: 86  TTGSKYILGIAGLFTIFSSF-LFSS 109

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>MYS_AEQIR (P24733) Myosin heavy chain, striated muscle|
          Length = 1938

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
 Frame = -1

Query: 353  QRSVTELAEEVQRLKLRNNQL-------EHQINGLSKKDERL 249
            QRS+ EL  +  RL+  N+ L       EH+++ LSK+  +L
Sbjct: 1264 QRSINELQSQKSRLQAENSDLTRQLEDAEHRVSVLSKEKSQL 1305

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>CARA_PORPU (P51201) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 384

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 170 IGELSYTTGTTGNKYIIIIASYYALFATF 256
           IGE+ + TG TG + II   SY+    TF
Sbjct: 31  IGEVVFNTGMTGYQEIITDPSYFQQIVTF 59

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>MYO5A_CHICK (Q02440) Myosin-5A (Myosin Va) (Dilute myosin heavy chain,|
            non-muscle) (Myosin heavy chain p190) (Myosin-V)
          Length = 1829

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -1

Query: 380  GLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERLRRE 240
            GLE+ ++QLQR + E  +E + L  + N LE      S + E+LR +
Sbjct: 925  GLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT---YSTETEKLRSD 968

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>KIF4A_MOUSE (P33174) Chromosome-associated kinesin KIF4A (Chromokinesin)|
          Length = 1231

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 13/54 (24%)
 Frame = -1

Query: 383 KGLESYVVQLQRSVTELAEEVQRLKLRNNQ-------------LEHQINGLSKK 261
           K LES V+ LQR   EL  E+Q  K   NQ             LE QI  L KK
Sbjct: 563 KNLESEVLSLQREKEELVLELQTAKKDANQAKLSERRRKRLQELEGQIADLKKK 616

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>CEBPB_RAT (P21272) CCAAT/enhancer-binding protein beta (C/EBP beta)|
           (Interleukin-6-dependent-binding protein) (IL-6DBP)
           (Liver-enriched transcriptional activator) (LAP)
           (Silencer factor B) (SF-B) (C/EBP-related protein 2)
          Length = 297

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/51 (23%), Positives = 32/51 (62%)
 Frame = -1

Query: 392 AREKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERLRRE 240
           A +K  + Y ++ +R+   + +   + K+RN + +H++  L+ ++ERL+++
Sbjct: 218 AVDKLSDEYKMRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 268

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>SCA_DROME (P21520) Protein scabrous precursor|
          Length = 799

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 386 EKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGL--SKKDERLR 246
           + GLE+     +R     +E++ +L+L    L  Q+NGL     DER+R
Sbjct: 309 QTGLETTADHKRRHCRFQSEQIHQLQLAQRNLRRQVNGLRFHHIDERVR 357

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>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 407

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 344 VTELAEEVQRLKLRNNQLEHQINGLSKKDERLRRE 240
           + EL  +V RL+L+N  +  +   + K++E L+RE
Sbjct: 27  IAELESKVLRLELKNKDINRENVQIKKENEILKRE 61

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>VB18_VARV (P33824) Ankyrin repeat protein B18|
          Length = 574

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = +2

Query: 26  LTDNTKHAVQI-----KNVYYNVNELANILTITIDTPT*FRNVIQ 145
           LTDN KHA+Q+     +N  Y ++ L  IL   +D     +NVI+
Sbjct: 357 LTDNNKHAIQLIIDNKENSQYTIDCLLYILRYIVD-----KNVIR 396

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>IFEA_ASCSU (P23730) Intermediate filament protein A (IF-A) (Fragment)|
          Length = 497

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 380 GLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQI 279
           GLE+ +  L+R +  + EE+ R+K  N Q  +++
Sbjct: 109 GLEAEINLLRRRIANIIEEIARIKKENLQFANEL 142

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>CP135_MOUSE (Q6P5D4) Centrosomal protein of 135 kDa (Cep135 protein)|
           (Centrosomal protein 4)
          Length = 1140

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -1

Query: 374 ESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSK----KDERLRR 243
           + ++  L+ ++ + + E   LK  NNQ  H++  L K    KDE++++
Sbjct: 97  DKHIKDLKTTLKKCSRETADLKFLNNQYVHKVKVLEKESKAKDEKIQQ 144

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>CEBPB_MOUSE (P28033) CCAAT/enhancer-binding protein beta (C/EBP beta)|
           (Interleukin-6-dependent-binding protein) (IL-6DBP)
           (Liver-enriched transcriptional activator) (LAP)
           (AGP/EBP)
          Length = 296

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/49 (22%), Positives = 31/49 (63%)
 Frame = -1

Query: 386 EKGLESYVVQLQRSVTELAEEVQRLKLRNNQLEHQINGLSKKDERLRRE 240
           +K  + Y ++ +R+   + +   + K+RN + +H++  L+ ++ERL+++
Sbjct: 219 DKLSDEYKMRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 267

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>SAS6_CHICK (Q5ZMV2) Spindle assembly abnormal protein 6 homolog|
          Length = 640

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = -1

Query: 383 KGLESYVVQLQRSVTELAEEVQ----RLKLRNNQLEHQINGLSKKDERLRREHSTKQ 225
           K L + +++    + +L E+++    +LKL+N     Q   L++K+ERL++E    Q
Sbjct: 379 KSLSAELLKANEIIKKLQEDLKTLMSKLKLKNTVTIQQEKLLAEKEERLQKEQRELQ 435

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>CARA_LISMO (Q8Y664) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 363

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 170 IGELSYTTGTTGNKYIIIIASYYALFATF 256
           IGE+ + TG TG +  I   SYY    TF
Sbjct: 26  IGEVVFNTGMTGYQETITDPSYYGQIITF 54

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>CARA_LISMF (Q71YI0) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 363

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 170 IGELSYTTGTTGNKYIIIIASYYALFATF 256
           IGE+ + TG TG +  I   SYY    TF
Sbjct: 26  IGEVVFNTGMTGYQETITDPSYYGQIITF 54

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>CARA_LISIN (Q92AH2) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 363

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 170 IGELSYTTGTTGNKYIIIIASYYALFATF 256
           IGE+ + TG TG +  I   SYY    TF
Sbjct: 26  IGEVVFNTGMTGYQETITDPSYYGQIITF 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,631,192
Number of Sequences: 219361
Number of extensions: 683905
Number of successful extensions: 2308
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 2248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2307
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result