ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK065283.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
3dbj|AP004012.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4dbj|AP003518.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
5gb|AC104332.2| Homo sapiens chromosome 1 clone RP11-330C7, compl... 44 0.34
6gb|AC127312.4| Mus musculus BAC clone RP23-306F21 from 15, compl... 42 1.3
7emb|AL137783.12| Human DNA sequence from clone RP5-1181K21 on ch... 42 1.3
8emb|AL603917.5| Mouse DNA sequence from clone RP23-107J13 on chr... 42 1.3
9gb|DQ372941.1| Methanococcus voltae enolase (MVO1102), ferredoxi... 42 1.3
10emb|Z75533.1|CEC54G4 Caenorhabditis elegans Cosmid C54G4, comple... 42 1.3
11gb|AC141868.4| Mus musculus BAC clone RP24-418L21 from 8, comple... 42 1.3
12ref|XM_638545.1| Dictyostelium discoideum hypothetical protein (... 40 5.2
13gb|AC158967.5| Mus musculus chromosome 1, clone RP23-39N17, comp... 40 5.2
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.2
15gb|AC114258.3| Dictyostelium discoideum chromosome 2 map complem... 40 5.2
16gb|AC009902.13| Homo sapiens chromosome 8, clone RP11-363E6, com... 40 5.2
17emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS... 40 5.2
18emb|CR380953.1| Candida glabrata strain CBS138 chromosome G comp... 40 5.2
19emb|BX571863.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 5.2
20gb|AC011998.8| Homo sapiens BAC clone RP11-318F5 from 2, complet... 40 5.2
21gb|AC007532.8| Drosophila melanogaster, chromosome 3R, region 82... 40 5.2
22dbj|AK047865.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 5.2
23dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
24gb|AE003603.4| Drosophila melanogaster chromosome 3R, section 5 ... 40 5.2
25gb|AC147240.3| Mus musculus BAC clone RP23-398F20 from 10, compl... 40 5.2
26emb|CR954188.2| Medicago truncatula chromosome 5 clone mth2-193f... 40 5.2
27gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2

>dbj|AK065283.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M04, full
            insert sequence
          Length = 3038

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 97/114 (85%)
 Strand = Plus / Minus

                                                                        
Query: 240  ctctcttcgcaacctttcgtcttttttcgacaacccattgatctgatgctcaagctgatt 299
            ||||||||| |||||||| |||||||| | |||  |||||||||| | ||| |||||| |
Sbjct: 2797 ctctcttcgtaacctttcatcttttttgggcaatgcattgatctgctcctcgagctgagt 2738

                                                                  
Query: 300  atttctcagctttaatctctgcacttcctcagcgagttctgtgacacttcgctg 353
             ||| | |||||||||||||| ||||||||||| ||||| ||||||||| ||||
Sbjct: 2737 gtttttgagctttaatctctgaacttcctcagcaagttcggtgacactttgctg 2684



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 139  aatacaattaatttcgctaaccaggttcaaaattggggagctga 182
            ||||||| |||||| ||||||||  |||||||||||||| ||||
Sbjct: 2893 aatacaaataattttgctaaccaaattcaaaattggggaactga 2850



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 307      agctttaatctctgcacttcctcagcgagttctgtgacact 347
                |||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 16387137 agctttaatctctgaacttcctcagcaagttcggtgacact 16387177



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 139      aatacaattaatttcgctaaccaggttcaaaattggggagctga 182
                ||||||| |||||| ||||||||  |||||||||||||| ||||
Sbjct: 16386884 aatacaaataattttgctaaccaaattcaaaattggggaactga 16386927



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>dbj|AP004012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1568_D07
          Length = 83857

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 307   agctttaatctctgcacttcctcagcgagttctgtgacact 347
             |||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 82238 agctttaatctctgaacttcctcagcaagttcggtgacact 82278



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 139   aatacaattaatttcgctaaccaggttcaaaattggggagctga 182
             ||||||| |||||| ||||||||  |||||||||||||| ||||
Sbjct: 81985 aatacaaataattttgctaaccaaattcaaaattggggaactga 82028



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>dbj|AP003518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0008F02
          Length = 139655

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 307   agctttaatctctgcacttcctcagcgagttctgtgacact 347
             |||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 63700 agctttaatctctgaacttcctcagcaagttcggtgacact 63740



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 139   aatacaattaatttcgctaaccaggttcaaaattggggagctga 182
             ||||||| |||||| ||||||||  |||||||||||||| ||||
Sbjct: 63447 aatacaaataattttgctaaccaaattcaaaattggggaactga 63490



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>gb|AC104332.2| Homo sapiens chromosome 1 clone RP11-330C7, complete sequence
          Length = 183838

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 63    atgtatactataatgtgaatga 84
             ||||||||||||||||||||||
Sbjct: 18209 atgtatactataatgtgaatga 18188



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>gb|AC127312.4| Mus musculus BAC clone RP23-306F21 from 15, complete sequence
          Length = 194254

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 216    tcattatcattgcttcgtact 236
              |||||||||||||||||||||
Sbjct: 122002 tcattatcattgcttcgtact 121982



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>emb|AL137783.12| Human DNA sequence from clone RP5-1181K21 on chromosome 6 Contains the
             5' end of the gene for a novel protein, the RPS12 gene for
             ribosomal protein S12, a high-mobility group (nonhistone
             chromosomal) protein 1-like 10 (HMG1L10) pseudogene, and a
             CpG island, complete sequence
          Length = 108895

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 63    atgtatactataatgtgaatgaact 87
             ||||||||||| |||||||||||||
Sbjct: 71122 atgtatactatgatgtgaatgaact 71146



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>emb|AL603917.5| Mouse DNA sequence from clone RP23-107J13 on chromosome 11 Contains a
              novel gene, a glyoxalase 1 (Glo1) pseudogene and a
              pseudogene similar to part of nuclear pore membrane protein
              121 Pom121, complete sequence
          Length = 212255

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 77     gtgaatgaactcgctaatatacttacaat 105
              ||||||||| || ||||||||||||||||
Sbjct: 139775 gtgaatgaattccctaatatacttacaat 139747



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>gb|DQ372941.1| Methanococcus voltae enolase (MVO1102), ferredoxin (MVO1103),
             hydrogenase maturation chaperone (MVO1104), putative
             membrane-associated alkaline phosphatase (MVO1105),
             UDP-N-acetyl-D-mannosamine 6-dehydrogenase (MVO1106),
             NAD-dependent oxidoreductase (MVO1107),
             heteropolysaccharide repeat unit export protein (MVO1108),
             helicase (MVO1832), glycosyltransferase (MVO0151),
             asparagine synthetase (MVO0152), glycosyltransferase
             (MVO0155), NAD-dependent epimerase/dehydratase family
             (MVO0156), D-glycero-D-manno-heptose-7-phosphate 1-kinase
             (MVO0157), methyltransferase (MVO0301), phosphoheptose
             isomerase (MVO0302), methyltransferase (MVO0303), and
             D-glycero-D-manno-heptose-1-phosphate adenylyltransferase
             (MVO0304) genes, complete cds
          Length = 19620

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 207   ataaatatatcattatcattg 227
             |||||||||||||||||||||
Sbjct: 11416 ataaatatatcattatcattg 11396



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>emb|Z75533.1|CEC54G4 Caenorhabditis elegans Cosmid C54G4, complete sequence
          Length = 34743

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 205  gaataaatatatcattatcat 225
            |||||||||||||||||||||
Sbjct: 4974 gaataaatatatcattatcat 4994



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>gb|AC141868.4| Mus musculus BAC clone RP24-418L21 from 8, complete sequence
          Length = 188063

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      caagtgagggaaactaatcct 27
              |||||||||||||||||||||
Sbjct: 122956 caagtgagggaaactaatcct 122976



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>ref|XM_638545.1| Dictyostelium discoideum hypothetical protein (DDB0217733), partial
            mRNA
          Length = 3813

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 208  taaatatatcattatcattg 227
            ||||||||||||||||||||
Sbjct: 1768 taaatatatcattatcattg 1749



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>gb|AC158967.5| Mus musculus chromosome 1, clone RP23-39N17, complete sequence
          Length = 244130

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   cccattgatctgatgctcaa 292
             ||||||||||||||||||||
Sbjct: 84339 cccattgatctgatgctcaa 84320



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    acagggaataaatatatcat 219
              ||||||||||||||||||||
Sbjct: 507130 acagggaataaatatatcat 507111



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>gb|AC114258.3| Dictyostelium discoideum chromosome 2 map complement(427476-387492)
             strain AX4, complete sequence
          Length = 39984

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   taaatatatcattatcattg 227
             ||||||||||||||||||||
Sbjct: 16124 taaatatatcattatcattg 16105



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>gb|AC009902.13| Homo sapiens chromosome 8, clone RP11-363E6, complete sequence
          Length = 217249

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 63     atgtatactataatgtgaatgaac 86
              ||||||||||||||||| ||||||
Sbjct: 103034 atgtatactataatgtggatgaac 103011



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>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces
               hansenii
          Length = 1602771

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 52      acaaatcaaaaatgtatact 71
               ||||||||||||||||||||
Sbjct: 1001254 acaaatcaaaaatgtatact 1001235



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>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence
          Length = 992211

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     ctgtacaaatcaaaaatgta 67
              ||||||||||||||||||||
Sbjct: 230394 ctgtacaaatcaaaaatgta 230375



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>emb|BX571863.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              5/17
          Length = 349318

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    tcttttttcgacaacccatt 278
              ||||||||||||||||||||
Sbjct: 119456 tcttttttcgacaacccatt 119437



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>gb|AC011998.8| Homo sapiens BAC clone RP11-318F5 from 2, complete sequence
          Length = 175951

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    gaaacgtaatacaattaatt 151
              ||||||||||||||||||||
Sbjct: 164370 gaaacgtaatacaattaatt 164351



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>gb|AC007532.8| Drosophila melanogaster, chromosome 3R, region 82F-82F, BAC clone
             BACR01D10, complete sequence
          Length = 171105

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   ctgatgctcaagctgattat 301
             ||||||||||||||||||||
Sbjct: 72722 ctgatgctcaagctgattat 72703



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>dbj|AK047865.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130014M19 product:unclassifiable, full
            insert sequence
          Length = 3562

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   agcatgctgtacaaatcaaa 61
            ||||||||||||||||||||
Sbjct: 1159 agcatgctgtacaaatcaaa 1178



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    acagggaataaatatatcat 219
              ||||||||||||||||||||
Sbjct: 507128 acagggaataaatatatcat 507109



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>gb|AE003603.4| Drosophila melanogaster chromosome 3R, section 5 of 118 of the complete
              sequence
          Length = 265289

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    ctgatgctcaagctgattat 301
              ||||||||||||||||||||
Sbjct: 100558 ctgatgctcaagctgattat 100577



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>gb|AC147240.3| Mus musculus BAC clone RP23-398F20 from 10, complete sequence
          Length = 195921

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    agcatgctgtacaaatcaaa 61
             ||||||||||||||||||||
Sbjct: 52424 agcatgctgtacaaatcaaa 52405



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>emb|CR954188.2| Medicago truncatula chromosome 5 clone mth2-193f16, COMPLETE SEQUENCE
          Length = 106631

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    atcaaaaatgtatactataa 75
             ||||||||||||||||||||
Sbjct: 97993 atcaaaaatgtatactataa 97974



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>gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1384D03,
              complete sequence
          Length = 116214

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    acagggaataaatatatcat 219
              ||||||||||||||||||||
Sbjct: 105590 acagggaataaatatatcat 105571


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,935,202
Number of Sequences: 3902068
Number of extensions: 3935202
Number of successful extensions: 67553
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67440
Number of HSP's gapped (non-prelim): 113
length of query: 392
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 370
effective length of database: 17,147,199,772
effective search space: 6344463915640
effective search space used: 6344463915640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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