Clone Name | rbastl42f09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK065283.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M04, full insert sequence Length = 3038 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Minus Query: 240 ctctcttcgcaacctttcgtcttttttcgacaacccattgatctgatgctcaagctgatt 299 ||||||||| |||||||| |||||||| | ||| |||||||||| | ||| |||||| | Sbjct: 2797 ctctcttcgtaacctttcatcttttttgggcaatgcattgatctgctcctcgagctgagt 2738 Query: 300 atttctcagctttaatctctgcacttcctcagcgagttctgtgacacttcgctg 353 ||| | |||||||||||||| ||||||||||| ||||| ||||||||| |||| Sbjct: 2737 gtttttgagctttaatctctgaacttcctcagcaagttcggtgacactttgctg 2684 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Minus Query: 139 aatacaattaatttcgctaaccaggttcaaaattggggagctga 182 ||||||| |||||| |||||||| |||||||||||||| |||| Sbjct: 2893 aatacaaataattttgctaaccaaattcaaaattggggaactga 2850
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 307 agctttaatctctgcacttcctcagcgagttctgtgacact 347 |||||||||||||| ||||||||||| ||||| |||||||| Sbjct: 16387137 agctttaatctctgaacttcctcagcaagttcggtgacact 16387177 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Plus Query: 139 aatacaattaatttcgctaaccaggttcaaaattggggagctga 182 ||||||| |||||| |||||||| |||||||||||||| |||| Sbjct: 16386884 aatacaaataattttgctaaccaaattcaaaattggggaactga 16386927
>dbj|AP004012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1568_D07 Length = 83857 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 307 agctttaatctctgcacttcctcagcgagttctgtgacact 347 |||||||||||||| ||||||||||| ||||| |||||||| Sbjct: 82238 agctttaatctctgaacttcctcagcaagttcggtgacact 82278 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Plus Query: 139 aatacaattaatttcgctaaccaggttcaaaattggggagctga 182 ||||||| |||||| |||||||| |||||||||||||| |||| Sbjct: 81985 aatacaaataattttgctaaccaaattcaaaattggggaactga 82028
>dbj|AP003518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0008F02 Length = 139655 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 307 agctttaatctctgcacttcctcagcgagttctgtgacact 347 |||||||||||||| ||||||||||| ||||| |||||||| Sbjct: 63700 agctttaatctctgaacttcctcagcaagttcggtgacact 63740 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Plus Query: 139 aatacaattaatttcgctaaccaggttcaaaattggggagctga 182 ||||||| |||||| |||||||| |||||||||||||| |||| Sbjct: 63447 aatacaaataattttgctaaccaaattcaaaattggggaactga 63490
>gb|AC104332.2| Homo sapiens chromosome 1 clone RP11-330C7, complete sequence Length = 183838 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 atgtatactataatgtgaatga 84 |||||||||||||||||||||| Sbjct: 18209 atgtatactataatgtgaatga 18188
>gb|AC127312.4| Mus musculus BAC clone RP23-306F21 from 15, complete sequence Length = 194254 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 tcattatcattgcttcgtact 236 ||||||||||||||||||||| Sbjct: 122002 tcattatcattgcttcgtact 121982
>emb|AL137783.12| Human DNA sequence from clone RP5-1181K21 on chromosome 6 Contains the 5' end of the gene for a novel protein, the RPS12 gene for ribosomal protein S12, a high-mobility group (nonhistone chromosomal) protein 1-like 10 (HMG1L10) pseudogene, and a CpG island, complete sequence Length = 108895 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 63 atgtatactataatgtgaatgaact 87 ||||||||||| ||||||||||||| Sbjct: 71122 atgtatactatgatgtgaatgaact 71146
>emb|AL603917.5| Mouse DNA sequence from clone RP23-107J13 on chromosome 11 Contains a novel gene, a glyoxalase 1 (Glo1) pseudogene and a pseudogene similar to part of nuclear pore membrane protein 121 Pom121, complete sequence Length = 212255 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 77 gtgaatgaactcgctaatatacttacaat 105 ||||||||| || |||||||||||||||| Sbjct: 139775 gtgaatgaattccctaatatacttacaat 139747
>gb|DQ372941.1| Methanococcus voltae enolase (MVO1102), ferredoxin (MVO1103), hydrogenase maturation chaperone (MVO1104), putative membrane-associated alkaline phosphatase (MVO1105), UDP-N-acetyl-D-mannosamine 6-dehydrogenase (MVO1106), NAD-dependent oxidoreductase (MVO1107), heteropolysaccharide repeat unit export protein (MVO1108), helicase (MVO1832), glycosyltransferase (MVO0151), asparagine synthetase (MVO0152), glycosyltransferase (MVO0155), NAD-dependent epimerase/dehydratase family (MVO0156), D-glycero-D-manno-heptose-7-phosphate 1-kinase (MVO0157), methyltransferase (MVO0301), phosphoheptose isomerase (MVO0302), methyltransferase (MVO0303), and D-glycero-D-manno-heptose-1-phosphate adenylyltransferase (MVO0304) genes, complete cds Length = 19620 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 ataaatatatcattatcattg 227 ||||||||||||||||||||| Sbjct: 11416 ataaatatatcattatcattg 11396
>emb|Z75533.1|CEC54G4 Caenorhabditis elegans Cosmid C54G4, complete sequence Length = 34743 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 gaataaatatatcattatcat 225 ||||||||||||||||||||| Sbjct: 4974 gaataaatatatcattatcat 4994
>gb|AC141868.4| Mus musculus BAC clone RP24-418L21 from 8, complete sequence Length = 188063 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 caagtgagggaaactaatcct 27 ||||||||||||||||||||| Sbjct: 122956 caagtgagggaaactaatcct 122976
>ref|XM_638545.1| Dictyostelium discoideum hypothetical protein (DDB0217733), partial mRNA Length = 3813 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 taaatatatcattatcattg 227 |||||||||||||||||||| Sbjct: 1768 taaatatatcattatcattg 1749
>gb|AC158967.5| Mus musculus chromosome 1, clone RP23-39N17, complete sequence Length = 244130 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 cccattgatctgatgctcaa 292 |||||||||||||||||||| Sbjct: 84339 cccattgatctgatgctcaa 84320
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 acagggaataaatatatcat 219 |||||||||||||||||||| Sbjct: 507130 acagggaataaatatatcat 507111
>gb|AC114258.3| Dictyostelium discoideum chromosome 2 map complement(427476-387492) strain AX4, complete sequence Length = 39984 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 taaatatatcattatcattg 227 |||||||||||||||||||| Sbjct: 16124 taaatatatcattatcattg 16105
>gb|AC009902.13| Homo sapiens chromosome 8, clone RP11-363E6, complete sequence Length = 217249 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 atgtatactataatgtgaatgaac 86 ||||||||||||||||| |||||| Sbjct: 103034 atgtatactataatgtggatgaac 103011
>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces hansenii Length = 1602771 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 acaaatcaaaaatgtatact 71 |||||||||||||||||||| Sbjct: 1001254 acaaatcaaaaatgtatact 1001235
>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence Length = 992211 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ctgtacaaatcaaaaatgta 67 |||||||||||||||||||| Sbjct: 230394 ctgtacaaatcaaaaatgta 230375
>emb|BX571863.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 5/17 Length = 349318 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 tcttttttcgacaacccatt 278 |||||||||||||||||||| Sbjct: 119456 tcttttttcgacaacccatt 119437
>gb|AC011998.8| Homo sapiens BAC clone RP11-318F5 from 2, complete sequence Length = 175951 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gaaacgtaatacaattaatt 151 |||||||||||||||||||| Sbjct: 164370 gaaacgtaatacaattaatt 164351
>gb|AC007532.8| Drosophila melanogaster, chromosome 3R, region 82F-82F, BAC clone BACR01D10, complete sequence Length = 171105 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 ctgatgctcaagctgattat 301 |||||||||||||||||||| Sbjct: 72722 ctgatgctcaagctgattat 72703
>dbj|AK047865.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130014M19 product:unclassifiable, full insert sequence Length = 3562 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 agcatgctgtacaaatcaaa 61 |||||||||||||||||||| Sbjct: 1159 agcatgctgtacaaatcaaa 1178
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 acagggaataaatatatcat 219 |||||||||||||||||||| Sbjct: 507128 acagggaataaatatatcat 507109
>gb|AE003603.4| Drosophila melanogaster chromosome 3R, section 5 of 118 of the complete sequence Length = 265289 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 ctgatgctcaagctgattat 301 |||||||||||||||||||| Sbjct: 100558 ctgatgctcaagctgattat 100577
>gb|AC147240.3| Mus musculus BAC clone RP23-398F20 from 10, complete sequence Length = 195921 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 agcatgctgtacaaatcaaa 61 |||||||||||||||||||| Sbjct: 52424 agcatgctgtacaaatcaaa 52405
>emb|CR954188.2| Medicago truncatula chromosome 5 clone mth2-193f16, COMPLETE SEQUENCE Length = 106631 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 atcaaaaatgtatactataa 75 |||||||||||||||||||| Sbjct: 97993 atcaaaaatgtatactataa 97974
>gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1384D03, complete sequence Length = 116214 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 acagggaataaatatatcat 219 |||||||||||||||||||| Sbjct: 105590 acagggaataaatatatcat 105571 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,935,202 Number of Sequences: 3902068 Number of extensions: 3935202 Number of successful extensions: 67553 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67440 Number of HSP's gapped (non-prelim): 113 length of query: 392 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 370 effective length of database: 17,147,199,772 effective search space: 6344463915640 effective search space used: 6344463915640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)