ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome... 178 9e-42
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 178 9e-42
3dbj|AK102476.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 9e-42
4dbj|AK058522.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 9e-42
5gb|AY111562.1| Zea mays CL51463_1 mRNA sequence 153 5e-34
6gb|AY104073.1| Zea mays PCO099302 mRNA sequence 153 5e-34
7gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1... 52 0.001
8ref|NM_121300.2| Arabidopsis thaliana unknown protein AT5G12970 ... 46 0.090
9ref|XM_506339.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.090
10ref|XM_478107.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.090
11emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, B... 46 0.090
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.090
13dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic D... 46 0.090
14dbj|AP005479.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.090
15dbj|AK122057.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.090
16dbj|AK067097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.090
17dbj|AK064915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.090
18ref|NM_104035.2| Arabidopsis thaliana unknown protein AT1G51570 ... 44 0.36
19ref|XM_468390.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.36
20gb|AY054155.1| Arabidopsis thaliana At1g51570/F19C24.20 mRNA, co... 44 0.36
21gb|AY045695.1| Arabidopsis thaliana F19C24.20/F19C24.20 mRNA, co... 44 0.36
22gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F1... 44 0.36
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
24gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D... 44 0.36
25dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
26gb|AY112391.1| Zea mays CL5467_2 mRNA sequence 42 1.4
27gb|AY111168.1| Zea mays CL5467_1 mRNA sequence 42 1.4
28gb|AC078859.13| Homo sapiens 3 BAC RP11-588N12 (Roswell Park Can... 40 5.6
29gb|AF099917.1| Caenorhabditis elegans cosmid F54D10, complete se... 40 5.6
30emb|AJ299436.2|LRU299436 Lumbricus rubellus mt2C gene for metall... 40 5.6
31gb|AC092355.2| Homo sapiens chromosome 7 clone RP11-310D24, comp... 40 5.6
32dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
33gb|AC108146.3| Homo sapiens BAC clone RP11-437H3 from 2, complet... 40 5.6
34dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
35dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
36gb|AC158470.1| Postia placenta clone JGIACWS-5E10, complete sequ... 40 5.6
37gb|AC171176.1| Mus musculus chromosome 3, clone wi1-2063J20, com... 40 5.6 
>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06,
             complete sequence
          Length = 136143

 Score =  178 bits (90), Expect = 9e-42
 Identities = 138/154 (89%)
 Strand = Plus / Minus

                                                                         
Query: 254   cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacg 313
             |||||| ||||||||| || |||||||| |||||||||||||||||||| |||||||| |
Sbjct: 48394 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttcagaggaacagagg 48335

                                                                         
Query: 314   gcatcttgtggcggaacctcgggtgcctcagggtgtacaggcctgcaaggaaaaccacaa 373
             ||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||
Sbjct: 48334 gcatcttgtggcggaaccttgggtgtctcaaggtgtacaggcctgcaaggaagaccacaa 48275

                                               
Query: 374   cacggaacggtgtgacgtacaggacgatcgcagc 407
             ||||||| || || ||||| ||||| || |||||
Sbjct: 48274 cacggaatggagtcacgtagaggacaatggcagc 48241
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  178 bits (90), Expect = 9e-42
 Identities = 138/154 (89%)
 Strand = Plus / Minus

                                                                            
Query: 254      cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacg 313
                |||||| ||||||||| || |||||||| |||||||||||||||||||| |||||||| |
Sbjct: 17671636 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttcagaggaacagagg 17671577

                                                                            
Query: 314      gcatcttgtggcggaacctcgggtgcctcagggtgtacaggcctgcaaggaaaaccacaa 373
                ||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||
Sbjct: 17671576 gcatcttgtggcggaaccttgggtgtctcaaggtgtacaggcctgcaaggaagaccacaa 17671517

                                                  
Query: 374      cacggaacggtgtgacgtacaggacgatcgcagc 407
                ||||||| || || ||||| ||||| || |||||
Sbjct: 17671516 cacggaatggagtcacgtagaggacaatggcagc 17671483
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>dbj|AK102476.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I04, full
            insert sequence
          Length = 3254

 Score =  178 bits (90), Expect = 9e-42
 Identities = 138/154 (89%)
 Strand = Plus / Minus

                                                                        
Query: 254  cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacg 313
            |||||| ||||||||| || |||||||| |||||||||||||||||||| |||||||| |
Sbjct: 2751 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttcagaggaacagagg 2692

                                                                        
Query: 314  gcatcttgtggcggaacctcgggtgcctcagggtgtacaggcctgcaaggaaaaccacaa 373
            ||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||
Sbjct: 2691 gcatcttgtggcggaaccttgggtgtctcaaggtgtacaggcctgcaaggaagaccacaa 2632

                                              
Query: 374  cacggaacggtgtgacgtacaggacgatcgcagc 407
            ||||||| || || ||||| ||||| || |||||
Sbjct: 2631 cacggaatggagtcacgtagaggacaatggcagc 2598
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>dbj|AK058522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H09, full
            insert sequence
          Length = 1888

 Score =  178 bits (90), Expect = 9e-42
 Identities = 138/154 (89%)
 Strand = Plus / Minus

                                                                        
Query: 254  cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacg 313
            |||||| ||||||||| || |||||||| |||||||||||||||||||| |||||||| |
Sbjct: 1480 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttcagaggaacagagg 1421

                                                                        
Query: 314  gcatcttgtggcggaacctcgggtgcctcagggtgtacaggcctgcaaggaaaaccacaa 373
            ||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||
Sbjct: 1420 gcatcttgtggcggaaccttgggtgtctcaaggtgtacaggcctgcaaggaagaccacaa 1361

                                              
Query: 374  cacggaacggtgtgacgtacaggacgatcgcagc 407
            ||||||| || || ||||| ||||| || |||||
Sbjct: 1360 cacggaatggagtcacgtagaggacaatggcagc 1327
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>gb|AY111562.1| Zea mays CL51463_1 mRNA sequence
          Length = 612

 Score =  153 bits (77), Expect = 5e-34
 Identities = 140/161 (86%)
 Strand = Plus / Plus

                                                                       
Query: 256 tacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacggc 315
           ||||||||||| || ||||| || ||||| | |||||||||||| ||||| || ||||||
Sbjct: 352 tacagcatgctgtcagtcctcgccggcagacgcctgaagaagttgagcgggacggacggc 411

                                                                       
Query: 316 atcttgtggcggaacctcgggtgcctcagggtgtacaggcctgcaaggaaaaccacaaca 375
           ||||||||||||||||| |||||||||||  |||||||||| || ||||| ||||| || 
Sbjct: 412 atcttgtggcggaacctggggtgcctcagcatgtacaggcccgcgaggaagaccacgacc 471

                                                    
Query: 376 cggaacggtgtgacgtacaggacgatcgcagcgatgaagca 416
           |||||||||||||||||||| ||||| || |||| ||||||
Sbjct: 472 cggaacggtgtgacgtacagcacgatggcggcgacgaagca 512
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>gb|AY104073.1| Zea mays PCO099302 mRNA sequence
          Length = 1254

 Score =  153 bits (77), Expect = 5e-34
 Identities = 140/161 (86%)
 Strand = Plus / Minus

                                                                       
Query: 256 tacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacggc 315
           ||||||||||| |||||||| || ||||| | |||||||||||| ||||| ||||| |||
Sbjct: 990 tacagcatgctgtcggtcctcgccggcagacgcctgaagaagttgagcgggacagatggc 931

                                                                       
Query: 316 atcttgtggcggaacctcgggtgcctcagggtgtacaggcctgcaaggaaaaccacaaca 375
           ||||||||||||||||| |||||||||||   |||||||||||| ||||| ||||| || 
Sbjct: 930 atcttgtggcggaacctggggtgcctcagcacgtacaggcctgcgaggaagaccacgacg 871

                                                    
Query: 376 cggaacggtgtgacgtacaggacgatcgcagcgatgaagca 416
           |||||||| ||||| ||||||||||| || |||| ||||||
Sbjct: 870 cggaacggagtgacatacaggacgatggcggcgacgaagca 830
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>gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1i2, complete sequence
          Length = 154095

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                         
Query: 259   agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacagacggcatc 318
             ||||||| ||| || |||||||||| |||||||||||| || ||||| ||||| || | |
Sbjct: 91505 agcatgcaatcagttcttgcaggcaacctcctgaagaaattgagcggcacagaaggaagc 91446

                           
Query: 319   ttgtggcggaacct 332
             ||||| || |||||
Sbjct: 91445 ttgtgacgaaacct 91432
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>ref|NM_121300.2| Arabidopsis thaliana unknown protein AT5G12970 mRNA, complete cds
          Length = 2557

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                        
Query: 274  cttgcaggcagcctcctgaagaagttcagcggaacagacggcatcttgtggcggaacctc 333
            |||||||| |||||||||||||  || ||||| ||||| || | |||||| | |||||| 
Sbjct: 2512 cttgcaggtagcctcctgaagagattgagcggcacagagggtagcttgtgcctgaacctt 2453

                       
Query: 334  gggtgcctcag 344
            || ||||||||
Sbjct: 2452 ggatgcctcag 2442
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>ref|XM_506339.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_F08.109 mRNA
          Length = 3486

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 275  ttgcaggcagcctcctgaagaagttca 301
            ||||||| |||||||||||||||||||
Sbjct: 3326 ttgcaggtagcctcctgaagaagttca 3300
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>ref|XM_478107.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3402

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 275  ttgcaggcagcctcctgaagaagttca 301
            ||||||| |||||||||||||||||||
Sbjct: 3207 ttgcaggtagcctcctgaagaagttca 3181
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>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
          Length = 90020

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                         
Query: 274   cttgcaggcagcctcctgaagaagttcagcggaacagacggcatcttgtggcggaacctc 333
             |||||||| |||||||||||||  || ||||| ||||| || | |||||| | |||||| 
Sbjct: 57099 cttgcaggtagcctcctgaagagattgagcggcacagagggtagcttgtgcctgaacctt 57040

                        
Query: 334   gggtgcctcag 344
             || ||||||||
Sbjct: 57039 ggatgcctcag 57029
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 275      ttgcaggcagcctcctgaagaagttca 301
                ||||||| |||||||||||||||||||
Sbjct: 17633773 ttgcaggtagcctcctgaagaagttca 17633799
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>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_F08
          Length = 134988

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 275   ttgcaggcagcctcctgaagaagttca 301
             ||||||| |||||||||||||||||||
Sbjct: 37806 ttgcaggtagcctcctgaagaagttca 37832
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>dbj|AP005479.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0045A07
          Length = 174165

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 275    ttgcaggcagcctcctgaagaagttca 301
              ||||||| |||||||||||||||||||
Sbjct: 161722 ttgcaggtagcctcctgaagaagttca 161748
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>dbj|AK122057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114M07, full
            insert sequence
          Length = 3592

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 275  ttgcaggcagcctcctgaagaagttca 301
            ||||||| |||||||||||||||||||
Sbjct: 3391 ttgcaggtagcctcctgaagaagttca 3365
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>dbj|AK067097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095C11, full
            insert sequence
          Length = 3402

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 275  ttgcaggcagcctcctgaagaagttca 301
            ||||||| |||||||||||||||||||
Sbjct: 3207 ttgcaggtagcctcctgaagaagttca 3181
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>dbj|AK064915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M15, full
            insert sequence
          Length = 3486

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 275  ttgcaggcagcctcctgaagaagttca 301
            ||||||| |||||||||||||||||||
Sbjct: 3326 ttgcaggtagcctcctgaagaagttca 3300
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>ref|NM_104035.2| Arabidopsis thaliana unknown protein AT1G51570 mRNA, complete cds
          Length = 2513

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 259  agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 308
            ||||||| ||| || ||||| || ||||||||||||||||| || |||||
Sbjct: 2327 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 2278
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>ref|XM_468390.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3000

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 280  ggcagcctcctgaagaagttca 301
            ||||||||||||||||||||||
Sbjct: 2975 ggcagcctcctgaagaagttca 2954
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>gb|AY054155.1| Arabidopsis thaliana At1g51570/F19C24.20 mRNA, complete cds
          Length = 873

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 259 agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 308
           ||||||| ||| || ||||| || ||||||||||||||||| || |||||
Sbjct: 869 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 820
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>gb|AY045695.1| Arabidopsis thaliana F19C24.20/F19C24.20 mRNA, complete cds
          Length = 1126

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 259 agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 308
           ||||||| ||| || ||||| || ||||||||||||||||| || |||||
Sbjct: 934 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 885
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>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete
              sequence
          Length = 124511

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                
Query: 259    agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 308
              ||||||| ||| || ||||| || ||||||||||||||||| || |||||
Sbjct: 123365 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 123316
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 280      ggcagcctcctgaagaagttca 301
                ||||||||||||||||||||||
Sbjct: 34979788 ggcagcctcctgaagaagttca 34979767
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>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete
             sequence
          Length = 92652

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 259   agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 308
             ||||||| ||| || ||||| || ||||||||||||||||| || |||||
Sbjct: 18385 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 18336
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>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0643F09
          Length = 161001

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 280   ggcagcctcctgaagaagttca 301
             ||||||||||||||||||||||
Sbjct: 40129 ggcagcctcctgaagaagttca 40108
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>gb|AY112391.1| Zea mays CL5467_2 mRNA sequence
          Length = 648

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 275 ttgcaggcagcctcctgaagaagtt 299
           ||||||| |||||||||||||||||
Sbjct: 245 ttgcaggtagcctcctgaagaagtt 269
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>gb|AY111168.1| Zea mays CL5467_1 mRNA sequence
          Length = 574

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 275 ttgcaggcagcctcctgaagaagtt 299
           ||||||| |||||||||||||||||
Sbjct: 215 ttgcaggtagcctcctgaagaagtt 239
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>gb|AC078859.13| Homo sapiens 3 BAC RP11-588N12 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 176802

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 125  tcagttcaatttttcggcaacccc 148
            |||||||||| |||||||||||||
Sbjct: 8838 tcagttcaatatttcggcaacccc 8815
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>gb|AF099917.1| Caenorhabditis elegans cosmid F54D10, complete sequence
          Length = 32563

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   gcaacggaaaaggctacaaa 112
            ||||||||||||||||||||
Sbjct: 5041 gcaacggaaaaggctacaaa 5060
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>emb|AJ299436.2|LRU299436 Lumbricus rubellus mt2C gene for metallothionein 2C, exons 1-4
          Length = 9629

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 77   aaacacagacatacaggcaa 96
            ||||||||||||||||||||
Sbjct: 7720 aaacacagacatacaggcaa 7701
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>gb|AC092355.2| Homo sapiens chromosome 7 clone RP11-310D24, complete sequence
          Length = 91792

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    aaaacacagacatacaggca 95
             ||||||||||||||||||||
Sbjct: 76720 aaaacacagacatacaggca 76701
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 328      aacctcgggtgcctcagggt 347
                ||||||||||||||||||||
Sbjct: 30318823 aacctcgggtgcctcagggt 30318842
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>gb|AC108146.3| Homo sapiens BAC clone RP11-437H3 from 2, complete sequence
          Length = 91810

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    aaaacacagacatacaggca 95
             ||||||||||||||||||||
Sbjct: 38386 aaaacacagacatacaggca 38405
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>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0042A10
          Length = 146840

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    aacctcgggtgcctcagggt 347
              ||||||||||||||||||||
Sbjct: 107142 aacctcgggtgcctcagggt 107161
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>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0456A01
          Length = 143710

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 328  aacctcgggtgcctcagggt 347
            ||||||||||||||||||||
Sbjct: 4550 aacctcgggtgcctcagggt 4569
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>gb|AC158470.1| Postia placenta clone JGIACWS-5E10, complete sequence
          Length = 33410

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   ggaaaaggctacaaacaacg 117
            ||||||||||||||||||||
Sbjct: 4549 ggaaaaggctacaaacaacg 4530
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>gb|AC171176.1| Mus musculus chromosome 3, clone wi1-2063J20, complete sequence
          Length = 40189

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    accatcctaaaacacagaca 87
             ||||||||||||||||||||
Sbjct: 12200 accatcctaaaacacagaca 12181


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,291,750
Number of Sequences: 3902068
Number of extensions: 3291750
Number of successful extensions: 54620
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54489
Number of HSP's gapped (non-prelim): 131
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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