Clone Information

BLAST Search Result

Clone Name	rbastl42f05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_469360.1\| Oryza sativa (japonica cultivar-group), mRNA	133	5e-28
2	dbj\|AK121157.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	133	5e-28
3	dbj\|AK066973.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	115	1e-22
4	gb\|AY109108.1\| Zea mays PCO116815 mRNA sequence	90	7e-15
5	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	88	3e-14
6	gb\|AC137998.2\| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genom...	88	3e-14
7	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
8	gb\|AC120508.3\| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genom...	88	3e-14
9	gb\|AC121490.2\| Oryza sativa (japonica cultivar-group) chromosome...	78	3e-11
10	gb\|BT017806.1\| Zea mays clone EL01N0506F04.c mRNA sequence	68	3e-08
11	gb\|AY112223.1\| Zea mays CL3071_1 mRNA sequence	60	6e-06
12	gb\|AC084023.8\| Oryza sativa (japonica cultivar-group) chromosome...	58	3e-05
13	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
14	dbj\|AK100513.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	3e-05
15	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	58	3e-05
16	ref\|NM_197253.1\| Oryza sativa (japonica cultivar-group) putative...	56	1e-04
17	gb\|AC125496.3\| Oryza sativa (japonica cultivar-group) chromosome...	54	4e-04
18	gb\|AC153930.2\| Mus musculus 10 BAC RP24-461H14 (Roswell Park Can...	46	0.097
19	gb\|AC146506.1\| Solanum demissum chromosome 5 BAC PGEC989P08 geno...	44	0.38
20	gb\|AY730338.1\| Solanum tuberosum strain P6/210 clone BAC BA47f2,...	42	1.5
21	ref\|XM_537383.2\| PREDICTED: Canis familiaris similar to RING fin...	42	1.5
22	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
23	dbj\|AP005822.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
24	dbj\|AP005695.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
25	emb\|AL670175.12\| Mouse DNA sequence from clone RP23-309K20 on ch...	42	1.5
26	gb\|AC113122.9\| Mus musculus chromosome 8, clone RP23-349P4, comp...	40	6.0
27	ref\|XM_543770.2\| PREDICTED: Canis familiaris similar to solute c...	40	6.0
28	gb\|AC125339.4\| Mus musculus BAC clone RP24-356P17 from chromosom...	40	6.0
29	emb\|Z95310.1\|CEH40L08 Caenorhabditis elegans Fosmid H40L08, comp...	40	6.0
30	gb\|AC162800.2\| Mus musculus BAC clone RP24-173D2 from chromosome...	40	6.0
31	emb\|AL590080.25\| Human DNA sequence from clone RP11-469M1 on chr...	40	6.0
32	emb\|AL683828.8\| Mouse DNA sequence from clone RP23-340H1 on chro...	40	6.0
33	emb\|AL845501.9\| Mouse DNA sequence from clone RP23-194C12 on chr...	40	6.0
34	gb\|AC093298.3\| Homo sapiens chromosome 5 clone RP11-543L14, comp...	40	6.0
35	gb\|AC105426.4\| Homo sapiens BAC clone RP11-794N18 from 4, comple...	40	6.0
36	ref\|NM_079456.2\| Drosophila melanogaster Soluble NSF attachment ...	40	6.0
37	gb\|AC009839.10\| Drosophila melanogaster 3L BAC RP98-16G9 (Roswel...	40	6.0
38	gb\|AC093260.2\| Homo sapiens chromosome 5 clone RP11-237B16, comp...	40	6.0
39	gb\|AC138310.3\| Mus musculus BAC clone RP23-205H21 from chromosom...	40	6.0
40	gb\|AC083783.8\| Homo sapiens chromosome 17, clone RP11-462C21, co...	40	6.0
41	gb\|AC092960.3\| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Canc...	40	6.0
42	gb\|AC113368.3\| Homo sapiens chromosome 5 clone RP11-116B13, comp...	40	6.0
43	ref\|XM_228548.3\| PREDICTED: Rattus norvegicus similar to hypothe...	40	6.0
44	gb\|AY069477.1\| Drosophila melanogaster LD21601 full insert cDNA	40	6.0
45	emb\|AL583742.2\|CNS07EFV Human chromosome 14 DNA sequence BAC R-3...	40	6.0
46	gb\|AC134339.6\| Mus musculus BAC clone RP23-5F21 from 8, complete...	40	6.0
47	gb\|AE003514.4\| Drosophila melanogaster chromosome 3L, section 71...	40	6.0
48	gb\|AC005291.1\|AC005291 Homo sapiens chromosome 17, clone hRPK.40...	40	6.0
49	gb\|U09374.1\|DMU09374 Drosophila melanogaster soluble NSF attachm...	40	6.0
50	emb\|AL691423.14\| Mouse DNA sequence from clone RP23-21D3 on chro...	40	6.0
51	gb\|AC024092.19\| Homo sapiens 12p BAC RP11-712A21 (Roswell Park C...	40	6.0

>ref|XM_469360.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3534

 Score =  133 bits (67), Expect = 5e-28
 Identities = 180/215 (83%), Gaps = 2/215 (0%)
 Strand = Plus / Minus

                                                                        
Query: 227  gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 286
            ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 3092 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3033

                                                                        
Query: 287  gcttccatcttctgagacagggcatgctgtaacttttggatttcatccctctttttcctt 346
            |||||||| ||||| ||||| || || || | |||||| ||||| || ||||||||||| 
Sbjct: 3032 gcttccattttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcctc 2973

                                                                        
Query: 347  agcttttcgagctccacttccgcatttagagccccttgaagctgaaggtatacggatagg 406
            |||||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||| || |  
Sbjct: 2972 agcttttcaagctcaacttctgcattgagagctccttggagttgaaggtatacagacaaa 2913

                                               
Query: 407  tctttgtttac-acagcagttg-acagtcaggtgg 439
            ||||||||||| ||||| |||| ||||||||||||
Sbjct: 2912 tctttgtttacaacagctgttgcacagtcaggtgg 2878

to top

>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full
            insert sequence
          Length = 3587

 Score =  133 bits (67), Expect = 5e-28
 Identities = 180/215 (83%), Gaps = 2/215 (0%)
 Strand = Plus / Minus

                                                                        
Query: 227  gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 286
            ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 3304 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3245

                                                                        
Query: 287  gcttccatcttctgagacagggcatgctgtaacttttggatttcatccctctttttcctt 346
            |||||||| ||||| ||||| || || || | |||||| ||||| || ||||||||||| 
Sbjct: 3244 gcttccattttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcctc 3185

                                                                        
Query: 347  agcttttcgagctccacttccgcatttagagccccttgaagctgaaggtatacggatagg 406
            |||||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||| || |  
Sbjct: 3184 agcttttcaagctcaacttctgcattgagagctccttggagttgaaggtatacagacaaa 3125

                                               
Query: 407  tctttgtttac-acagcagttg-acagtcaggtgg 439
            ||||||||||| ||||| |||| ||||||||||||
Sbjct: 3124 tctttgtttacaacagctgttgcacagtcaggtgg 3090

to top

>dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full
            insert sequence
          Length = 4411

 Score =  115 bits (58), Expect = 1e-22
 Identities = 121/142 (85%)
 Strand = Plus / Minus

                                                                        
Query: 263  ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatgctgtaacttt 322
            |||||||||||| | |||||||| |||||||| ||||| || |||||||| || | ||||
Sbjct: 4113 ggagccttctctttataaccggaagcttccattttctgtgatagggcatgttgcagcttt 4054

                                                                        
Query: 323  tggatttcatccctctttttccttagcttttcgagctccacttccgcatttagagcccct 382
            || ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||| |||
Sbjct: 4053 tgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagagctcct 3994

                                  
Query: 383  tgaagctgaaggtatacggata 404
            || || || |||||||| ||||
Sbjct: 3993 tggagttggaggtatacagata 3972

to top

>gb|AY109108.1| Zea mays PCO116815 mRNA sequence
          Length = 1041

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 202/253 (79%), Gaps = 1/253 (0%)
 Strand = Plus / Minus

                                                                       
Query: 176 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttc 235
           |||| |||||||||||| |||| |||||||   |||||||| || || ||||||||||||
Sbjct: 801 tctaatttcttctcagcttcactgatgacctctagttgctccaacaaagcggtgagcttc 742

                                                                       
Query: 236 ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 295
           |||||||||||||| || || ||  | ||||||||||| |  || || || || ||||| 
Sbjct: 741 ctcatgtcctcctcctgtacgctctgtggagccttctcgcgatagccagaggcgtccatt 682

                                                                       
Query: 296 ttctgagacagggcatgctgtaacttttggatttcatccctctttttccttagcttttcg 355
           ||||| | ||| |||| ||||| |||||| || |||||  | || ||| |||||||||| 
Sbjct: 681 ttctgcgccagtgcattctgtagcttttgaatctcatcttttttcttctttagcttttca 622

                                                                       
Query: 356 agctccacttccgcatttagagccccttgaagctgaaggtatacggataggtctttgttt 415
            | ||  | || ||||||| ||| ||||| ||||||||||| || || | ||||||||| 
Sbjct: 621 cgttcagcgtctgcatttaaagctccttggagctgaaggtacacagacaagtctttgttg 562

                        
Query: 416 ac-acagcagttg 427
           || ||||||||||
Sbjct: 561 acaacagcagttg 549

to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 106/124 (85%), Gaps = 2/124 (1%)
 Strand = Plus / Minus

                                                                            
Query: 318      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 377
                ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 27542546 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 27542487

                                                                            
Query: 378      ccccttgaagctgaaggtatacggataggtctttgtttac-acagcagttg-acagtcag 435
                | ||||| || ||||||||||| || |  ||||||||||| ||||| |||| ||||||||
Sbjct: 27542486 ctccttggagttgaaggtatacagacaaatctttgtttacaacagctgttgcacagtcag 27542427

                    
Query: 436      gtgg 439
                ||||
Sbjct: 27542426 gtgg 27542423



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                          
Query: 318    acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 377
              ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 651915 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 651856

                                         
Query: 378    ccccttgaagctgaaggtatacggata 404
              | ||||| || || |||||||| ||||
Sbjct: 651855 ctccttggagttggaggtatacagata 651829



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 227      gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 286
                ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 27542742 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27542683

                                    
Query: 287      gcttccatcttctgagacag 306
                |||||||| ||||| |||||
Sbjct: 27542682 gcttccattttctgtgacag 27542663



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                            
Query: 318      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 377
                ||||||||||| |||| ||||| ||||||||||||||  ||||  | || |||||||  |
Sbjct: 12395975 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 12396034

                                   
Query: 378      ccccttgaagctgaaggta 396
                | |||||||||| ||||||
Sbjct: 12396035 ctccttgaagcttaaggta 12396053



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 263    ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 312
              |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 652074 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652025



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 173      gcatctagtttcttctcagcctcac 197
                |||||||||||||||||||| ||||
Sbjct: 12395727 gcatctagtttcttctcagcttcac 12395751

to top

>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete
             sequence
          Length = 27470

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 106/124 (85%), Gaps = 2/124 (1%)
 Strand = Plus / Plus

                                                                         
Query: 318   acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 377
             ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 20228 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 20287

                                                                         
Query: 378   ccccttgaagctgaaggtatacggataggtctttgtttac-acagcagttg-acagtcag 435
             | ||||| || ||||||||||| || |  ||||||||||| ||||| |||| ||||||||
Sbjct: 20288 ctccttggagttgaaggtatacagacaaatctttgtttacaacagctgttgcacagtcag 20347

                 
Query: 436   gtgg 439
             ||||
Sbjct: 20348 gtgg 20351



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                         
Query: 227   gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 286
             ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 20032 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 20091

                                 
Query: 287   gcttccatcttctgagacag 306
             |||||||| ||||| |||||
Sbjct: 20092 gcttccattttctgtgacag 20111

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 106/124 (85%), Gaps = 2/124 (1%)
 Strand = Plus / Minus

                                                                            
Query: 318      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 377
                ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 27633869 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 27633810

                                                                            
Query: 378      ccccttgaagctgaaggtatacggataggtctttgtttac-acagcagttg-acagtcag 435
                | ||||| || ||||||||||| || |  ||||||||||| ||||| |||| ||||||||
Sbjct: 27633809 ctccttggagttgaaggtatacagacaaatctttgtttacaacagctgttgcacagtcag 27633750

                    
Query: 436      gtgg 439
                ||||
Sbjct: 27633749 gtgg 27633746



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                          
Query: 318    acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 377
              ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 651913 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 651854

                                         
Query: 378    ccccttgaagctgaaggtatacggata 404
              | ||||| || || |||||||| ||||
Sbjct: 651853 ctccttggagttggaggtatacagata 651827



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 227      gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 286
                ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 27634065 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27634006

                                    
Query: 287      gcttccatcttctgagacag 306
                |||||||| ||||| |||||
Sbjct: 27634005 gcttccattttctgtgacag 27633986



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                            
Query: 318      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 377
                ||||||||||| |||| ||||| ||||||||||||||  ||||  | || |||||||  |
Sbjct: 12392738 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 12392797

                                   
Query: 378      ccccttgaagctgaaggta 396
                | |||||||||| ||||||
Sbjct: 12392798 ctccttgaagcttaaggta 12392816



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 263    ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 312
              |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 652072 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652023



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 173      gcatctagtttcttctcagcctcac 197
                |||||||||||||||||||| ||||
Sbjct: 12392490 gcatctagtttcttctcagcttcac 12392514

to top

>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence,
            complete sequence
          Length = 123406

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 106/124 (85%), Gaps = 2/124 (1%)
 Strand = Plus / Plus

                                                                        
Query: 318  acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 377
            ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 7968 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 8027

                                                                        
Query: 378  ccccttgaagctgaaggtatacggataggtctttgtttac-acagcagttg-acagtcag 435
            | ||||| || ||||||||||| || |  ||||||||||| ||||| |||| ||||||||
Sbjct: 8028 ctccttggagttgaaggtatacagacaaatctttgtttacaacagctgttgcacagtcag 8087

                
Query: 436  gtgg 439
            ||||
Sbjct: 8088 gtgg 8091



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                        
Query: 227  gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 286
            ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 7772 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 7831

                                
Query: 287  gcttccatcttctgagacag 306
            |||||||| ||||| |||||
Sbjct: 7832 gcttccattttctgtgacag 7851

to top

>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0005F16, complete sequence
          Length = 160053

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                         
Query: 318   acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 377
             ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 37796 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 37737

                                        
Query: 378   ccccttgaagctgaaggtatacggata 404
             | ||||| || || |||||||| ||||
Sbjct: 37736 ctccttggagttggaggtatacagata 37710



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 263   ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 312
             |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 37955 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 37906

to top

>gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence
          Length = 1244

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 213/270 (78%), Gaps = 2/270 (0%)
 Strand = Plus / Minus

                                                                       
Query: 176 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttc 235
           |||| |||||||||||| |||| |||||||   ||||| || || || |||| |||||| 
Sbjct: 953 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggggagcttt 894

                                                                       
Query: 236 ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 295
           |||||||||||||| || || ||  | ||||||||||| |  || || || || ||||| 
Sbjct: 893 ctcatgtcctcctcctgcacgctctgtggagccttctcgcgatacccagaggcgtccatt 834

                                                                       
Query: 296 ttctgagacagggcatgctgtaacttttggatttcatccctctttttccttagcttttcg 355
           ||||| | ||| ||||  |||| |||||| ||||||||  | || |||||||||||||| 
Sbjct: 833 ttctgtgccagtgcattttgtagcttttgaatttcatcttttttcttccttagcttttca 774

                                                                       
Query: 356 agctccacttccgcatttagagccccttgaagctgaaggtatacggataggtctttgttt 415
            ||||  | ||  |||||| | | ||||| ||||||||||| || || | ||||||||| 
Sbjct: 773 cgctcagcatcttcatttaaatctccttggagctgaaggtacacagacaagtctttgttg 714

                                         
Query: 416 ac-acagcagttg-acagtcaggtggagtt 443
           || |||||||||| ||| || |||||||||
Sbjct: 713 acaacagcagttgcacaatcgggtggagtt 684

to top

>gb|AY112223.1| Zea mays CL3071_1 mRNA sequence
          Length = 1082

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                       
Query: 176 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttc 235
           |||| |||||||||||| |||| |||||||   ||||| || || || ||||||||||| 
Sbjct: 446 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggtgagcttt 505

                         
Query: 236 ctcatgtcctcctc 249
           ||||||||||||||
Sbjct: 506 ctcatgtcctcctc 519

to top

>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05
              map S21174S, complete sequence
          Length = 178867

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 80/97 (82%)
 Strand = Plus / Minus

                                                                          
Query: 318    acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 377
              ||||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  |||||||
Sbjct: 141536 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 141477

                                                   
Query: 378    ccccttgaagctgaaggtatacggataggtctttgtt 414
              | ||| | ||||| |||||||||||||| ||||||||
Sbjct: 141476 ctcctcgtagctggaggtatacggatagatctttgtt 141440

to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 80/97 (82%)
 Strand = Plus / Minus

                                                                            
Query: 318      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 377
                ||||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  |||||||
Sbjct: 18843800 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 18843741

                                                     
Query: 378      ccccttgaagctgaaggtatacggataggtctttgtt 414
                | ||| | ||||| |||||||||||||| ||||||||
Sbjct: 18843740 ctcctcgtagctggaggtatacggatagatctttgtt 18843704

to top

>dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P08, full
            insert sequence
          Length = 3639

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                        
Query: 308  gcatgctgtaacttttggatttcatccctctttttccttagcttttcgagctccacttcc 367
            ||||| |||| |||||||||| |||| ||||| ||||||||||||||  ||||  | || 
Sbjct: 3384 gcatggtgtagcttttggattccatctctcttcttccttagcttttcacgctcagcctct 3325

                                         
Query: 368  gcatttagagccccttgaagctgaaggta 396
            |||||||  || |||||||||| ||||||
Sbjct: 3324 gcatttatggctccttgaagcttaaggta 3296



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 173  gcatctagtttcttctcagcctcac 197
            |||||||||||||||||||| ||||
Sbjct: 3519 gcatctagtttcttctcagcttcac 3495

to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 80/97 (82%)
 Strand = Plus / Minus

                                                                            
Query: 318      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 377
                ||||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  |||||||
Sbjct: 18855054 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 18854995

                                                     
Query: 378      ccccttgaagctgaaggtatacggataggtctttgtt 414
                | ||| | ||||| |||||||||||||| ||||||||
Sbjct: 18854994 ctcctcgtagctggaggtatacggatagatctttgtt 18854958

to top

>ref|NM_197253.1| Oryza sativa (japonica cultivar-group) putative valyl tRNA synthetase
            (OSJNBa0062C05.27), mRNA
          Length = 3171

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                        
Query: 319  cttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagagc 378
            |||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  ||||||||
Sbjct: 3015 cttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagagc 2956

                                                
Query: 379  cccttgaagctgaaggtatacggataggtctttgtt 414
             ||| | ||||| |||||||||||||| ||||||||
Sbjct: 2955 tcctcgtagctggaggtatacggatagatctttgtt 2920

to top

>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0098H14, complete sequence
          Length = 132560

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                         
Query: 318   acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 377
             ||||||||||| |||| ||||| ||||||||||||||  ||||  | || |||||||  |
Sbjct: 54993 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 55052

                                
Query: 378   ccccttgaagctgaaggta 396
             | |||||||||| ||||||
Sbjct: 55053 ctccttgaagcttaaggta 55071



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 173   gcatctagtttcttctcagcctcac 197
             |||||||||||||||||||| ||||
Sbjct: 54745 gcatctagtttcttctcagcttcac 54769

to top

>gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 186915

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 45     tttgaattttctataaatgtgacatca 71
              |||||| ||||||||||||||||||||
Sbjct: 132214 tttgaaatttctataaatgtgacatca 132188

to top

>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete
             sequence
          Length = 121915

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 43    catttgaattttctataaatgt 64
             ||||||||||||||||||||||
Sbjct: 75708 catttgaattttctataaatgt 75687

to top

>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence
          Length = 81567

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 44    atttgaattttctataaatgt 64
             |||||||||||||||||||||
Sbjct: 74176 atttgaattttctataaatgt 74196

to top

>ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING finger protein 31 (Zinc
            in-between-RING-finger ubiquitin-associated domain
            protein) (LOC480259), mRNA
          Length = 3490

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 192  cctcaccgatgacccgcagttgctc 216
            ||||||||||||| |||||||||||
Sbjct: 2442 cctcaccgatgacacgcagttgctc 2466

to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 98      tatcaacttccaaacaaaaat 118
               |||||||||||||||||||||
Sbjct: 9829802 tatcaacttccaaacaaaaat 9829822

to top

>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0456E06
          Length = 164353

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 98     tatcaacttccaaacaaaaat 118
              |||||||||||||||||||||
Sbjct: 120044 tatcaacttccaaacaaaaat 120064

to top

>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0063H02
          Length = 152326

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    tatcaacttccaaacaaaaat 118
             |||||||||||||||||||||
Sbjct: 26437 tatcaacttccaaacaaaaat 26457

to top

>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete
              sequence
          Length = 168158

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 60     aatgtgacatcaccaccatcc 80
              |||||||||||||||||||||
Sbjct: 140982 aatgtgacatcaccaccatcc 141002

to top

>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence
          Length = 203728

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    ccatttgaattttctataaa 61
             ||||||||||||||||||||
Sbjct: 23208 ccatttgaattttctataaa 23189

to top

>ref|XM_543770.2| PREDICTED: Canis familiaris similar to solute carrier family 7
            (cationic amino acid transporter, y+ system), member 3
            (LOC486643), mRNA
          Length = 3279

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  atgctgtaacttttggattt 329
            ||||||||||||||||||||
Sbjct: 1571 atgctgtaacttttggattt 1590

to top

>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete
             sequence
          Length = 156282

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   aacttccaaacaaaaatgcc 121
             ||||||||||||||||||||
Sbjct: 16747 aacttccaaacaaaaatgcc 16766

to top

>emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, complete sequence
          Length = 15122

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 102  aacttccaaacaaaaatgcc 121
            ||||||||||||||||||||
Sbjct: 3649 aacttccaaacaaaaatgcc 3668

to top

>gb|AC162800.2| Mus musculus BAC clone RP24-173D2 from chromosome 17, complete sequence
          Length = 199202

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 372   ttagagccccttgaagctgaaggt 395
             ||||| ||||||||||||||||||
Sbjct: 47915 ttagatccccttgaagctgaaggt 47938

to top

>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the
             HHEX gene for hematopoietically expressed homeobox, the 5'
             end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a
             eukaryotic translation initiation factor 2 subunit 2
             (eIF-2-beta) pseudogene and four CpG islands, complete
             sequence
          Length = 190144

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   agagccccttgaagctgaag 393
             ||||||||||||||||||||
Sbjct: 76717 agagccccttgaagctgaag 76736

to top

>emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chromosome 4 Contains the
             3' end of the Col27a1 gene for procollagen type XXVII
             alpha 1, the Orm1, Orm2 and Orm3 genes for orosomucoid 1,
             2 and 3, an orosomucoid pseudogene, the gene for a novel
             protein similar to human AT-hook protein AKNA, gene
             4933437N03Rik, the Whrn gene for whirlin and two CpG
             islands, complete sequence
          Length = 214370

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   gagcttcctcatgtcctcct 248
             ||||||||||||||||||||
Sbjct: 31754 gagcttcctcatgtcctcct 31735

to top

>emb|AL845501.9| Mouse DNA sequence from clone RP23-194C12 on chromosome 4 Contains a
             ribosomal protein S18 (Rps18) pseudogene, complete
             sequence
          Length = 156572

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   ttccatcttctgagacaggg 308
             ||||||||||||||||||||
Sbjct: 31116 ttccatcttctgagacaggg 31135

to top

>gb|AC093298.3| Homo sapiens chromosome 5 clone RP11-543L14, complete sequence
          Length = 198687

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    cctctttttccttagctttt 353
              ||||||||||||||||||||
Sbjct: 147791 cctctttttccttagctttt 147772

to top

>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence
          Length = 55775

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   gcttcctcatgtcctcctct 250
             ||||||||||||||||||||
Sbjct: 23507 gcttcctcatgtcctcctct 23526

to top

>ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment protein CG6625-RA
            (Snap), mRNA
          Length = 2069

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   gaattttctataaatgtgac 67
            ||||||||||||||||||||
Sbjct: 1762 gaattttctataaatgtgac 1743

to top

>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 185918

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     gaattttctataaatgtgac 67
              ||||||||||||||||||||
Sbjct: 106242 gaattttctataaatgtgac 106223

to top

>gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, complete sequence
          Length = 168521

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   attttctataaatgtgacat 69
            ||||||||||||||||||||
Sbjct: 1961 attttctataaatgtgacat 1980

to top

>gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosome 17, complete sequence
          Length = 195483

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    aacttccaaacaaaaatgcc 121
              ||||||||||||||||||||
Sbjct: 160602 aacttccaaacaaaaatgcc 160621

to top

>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence
          Length = 143516

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     tgaattttctataaatgtga 66
              ||||||||||||||||||||
Sbjct: 121095 tgaattttctataaatgtga 121076

to top

>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172507

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     catttgaattttctataaat 62
              ||||||||||||||||||||
Sbjct: 161099 catttgaattttctataaat 161080

to top

>gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, complete sequence
          Length = 155354

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    attttctataaatgtgacat 69
             ||||||||||||||||||||
Sbjct: 23774 attttctataaatgtgacat 23793

to top

>ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothetical protein
            6430402L03 (LOC302412), mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  cttcctcatgtcctcctctt 251
            ||||||||||||||||||||
Sbjct: 1005 cttcctcatgtcctcctctt 986

to top

>gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA
          Length = 2054

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   gaattttctataaatgtgac 67
            ||||||||||||||||||||
Sbjct: 1730 gaattttctataaatgtgac 1711

to top

>emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-318A9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175584

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    atgtgacatcaccaccatcc 80
             ||||||||||||||||||||
Sbjct: 71007 atgtgacatcaccaccatcc 71026

to top

>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence
          Length = 229073

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    ctgtaacttttggatttcat 332
              ||||||||||||||||||||
Sbjct: 161157 ctgtaacttttggatttcat 161138

to top

>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete
              sequence
          Length = 299903

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     gaattttctataaatgtgac 67
              ||||||||||||||||||||
Sbjct: 288396 gaattttctataaatgtgac 288377

to top

>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence
          Length = 198582

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    tgaattttctataaatgtga 66
             ||||||||||||||||||||
Sbjct: 63377 tgaattttctataaatgtga 63358

to top

>gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachment protein mRNA, complete
            cds
          Length = 2038

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   gaattttctataaatgtgac 67
            ||||||||||||||||||||
Sbjct: 1718 gaattttctataaatgtgac 1699

to top

>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete
              sequence
          Length = 216415

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     tttgaattttctataaatgt 64
              ||||||||||||||||||||
Sbjct: 104442 tttgaattttctataaatgt 104461

to top

>gb|AC024092.19| Homo sapiens 12p BAC RP11-712A21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 171887

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   cttttggatttcatccctct 338
             ||||||||||||||||||||
Sbjct: 59407 cttttggatttcatccctct 59388


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,568,049
Number of Sequences: 3902068
Number of extensions: 4568049
Number of successful extensions: 125888
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125567
Number of HSP's gapped (non-prelim): 314
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result