ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl42f03 |
|---|---|
| Clone Library Name | barley_pub |
>CARB_ANASP (Q8YQL2) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1104 Score = 53.5 bits (127), Expect = 2e-07 Identities = 22/42 (52%), Positives = 35/42 (83%) Frame = -3 Query: 428 LRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDY 303 +RR LAYK+PIITT+ GA+AT+ AI+SM+N ++++ +Q+Y Sbjct: 1059 IRRTGLAYKIPIITTIAGAKATVAAIRSMQNTTLDVKTIQEY 1100
>CARB_SYNY3 (Q55756) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1081 Score = 50.8 bits (120), Expect = 1e-06 Identities = 22/45 (48%), Positives = 35/45 (77%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDY 303 G +RR AL YK+PIITT+ G +AT+ A++S+++ +++ ALQDY Sbjct: 1035 GRTIRRAALDYKLPIITTIAGGKATVAALRSLQDHPLDVKALQDY 1079
>CARB_RHILO (Q98I87) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1167 Score = 43.1 bits (100), Expect = 3e-04 Identities = 21/43 (48%), Positives = 28/43 (65%) Frame = -3 Query: 428 LRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDYF 300 LRR L KVP TT+ GA A +AI ++K S+E+ LQ+YF Sbjct: 1124 LRRATLMQKVPYYTTLSGAAAVAEAIAALKAGSLEVRPLQEYF 1166
>CARB_BRUSU (Q8FZJ3) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1162 Score = 41.2 bits (95), Expect = 0.001 Identities = 19/43 (44%), Positives = 28/43 (65%) Frame = -3 Query: 428 LRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDYF 300 +RR L K+P TT+ GA + +AI ++K S+E+ LQDYF Sbjct: 1118 IRRATLMQKLPYYTTMAGAESAAEAIAALKAGSLEVRPLQDYF 1160
>CARB_BRUME (Q8YIC2) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1162 Score = 41.2 bits (95), Expect = 0.001 Identities = 19/43 (44%), Positives = 28/43 (65%) Frame = -3 Query: 428 LRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDYF 300 +RR L K+P TT+ GA + +AI ++K S+E+ LQDYF Sbjct: 1118 IRRATLMQKLPYYTTMAGAESAAEAIAALKAGSLEVRPLQDYF 1160
>CARB2_METKA (Q8TUT7) Carbamoyl-phosphate synthase large chain, C-terminal| section (EC 6.3.5.5) (Carbamoyl-phosphate synthetase ammonia chain) Length = 542 Score = 41.2 bits (95), Expect = 0.001 Identities = 18/44 (40%), Positives = 29/44 (65%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQD 306 G +RR A+ +KVP ITT+ A+A ++AI+ +K K + + L D Sbjct: 478 GYAIRRAAVKFKVPYITTIAAAKAAVEAIELVKEKGVTVNCLHD 521
>CARB_AGRT5 (Q8UDE9) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1162 Score = 40.8 bits (94), Expect = 0.001 Identities = 21/43 (48%), Positives = 27/43 (62%) Frame = -3 Query: 428 LRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDYF 300 LRR L KVP TT+ GA A AIK++K ++E+ LQ YF Sbjct: 1119 LRRATLMQKVPYYTTMAGAEAAALAIKALKAGNLEVKPLQSYF 1161
>CARB_RHIME (Q92PZ4) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1163 Score = 40.8 bits (94), Expect = 0.001 Identities = 21/43 (48%), Positives = 27/43 (62%) Frame = -3 Query: 428 LRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDYF 300 LRR L KVP TT+ GA A AIK++K ++E+ LQ YF Sbjct: 1119 LRRATLMQKVPYYTTMAGAEAAALAIKALKAGNLEVRPLQSYF 1161
>CARB_THETN (Q8RBK0) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1072 Score = 40.0 bits (92), Expect = 0.003 Identities = 13/45 (28%), Positives = 30/45 (66%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDY 303 G +LRR A+ Y++P+ T++D +A ++A+ + + +L++ +Y Sbjct: 1015 GFKLRRTAVEYRIPLFTSIDTIKAALNAVSKVNVNGLSVLSMNEY 1059
>CARB_METMA (P58944) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1073 Score = 38.9 bits (89), Expect = 0.006 Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSM-KNKSIEILALQDY 303 G ++RR A+ +KVP ITT+ A A DAI++M K + + I ++ +Y Sbjct: 1019 GYRIRRAAVDFKVPYITTIQAAVAAADAIETMKKGQDLTIKSINEY 1064
>CARB_METTH (O27077) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1060 Score = 38.5 bits (88), Expect = 0.007 Identities = 16/45 (35%), Positives = 31/45 (68%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDY 303 G +RR+A+ +P +TT+ GARA ++AI++++ I + +L +Y Sbjct: 1013 GYLIRRMAVELGIPYVTTLAGARAALNAIEAVRMGKITVKSLDEY 1057
>CARB_ARCFU (O28994) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1076 Score = 37.4 bits (85), Expect = 0.016 Identities = 17/45 (37%), Positives = 31/45 (68%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDY 303 G +RR A+ Y V ITT+ GA A + AI+++K++ + + ++Q+Y Sbjct: 1028 GYMIRRAAVDYGVAHITTLAGAMAAVRAIEAVKSRKMVVKSIQEY 1072
>CARB_LEPIN (Q8F832) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1106 Score = 36.2 bits (82), Expect = 0.036 Identities = 16/41 (39%), Positives = 27/41 (65%) Frame = -3 Query: 428 LRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQD 306 +R+ A+ +KVP +TT + A+A + + MKNK I +LQ+ Sbjct: 1058 IRQAAIRFKVPCLTTSNAAKALIKGMVEMKNKGFTIHSLQE 1098
>CARB_LEPIC (Q72NF1) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1106 Score = 36.2 bits (82), Expect = 0.036 Identities = 16/41 (39%), Positives = 27/41 (65%) Frame = -3 Query: 428 LRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQD 306 +R+ A+ +KVP +TT + A+A + + MKNK I +LQ+ Sbjct: 1058 IRQAAIRFKVPCLTTSNAAKALIKGMVEMKNKGFTIHSLQE 1098
>CARB_METAC (Q8TNY4) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1070 Score = 36.2 bits (82), Expect = 0.036 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSM-KNKSIEILALQDY 303 G ++RR A+ +KVP ITT+ A A AI++M K + + I ++ +Y Sbjct: 1019 GSRIRRAAVDFKVPYITTIQAASAAAAAIETMKKGEDLTIKSINEY 1064
>CARB2_METJA (Q58776) Carbamoyl-phosphate synthase large chain, C-terminal| section (EC 6.3.5.5) (Carbamoyl-phosphate synthetase ammonia chain) Length = 618 Score = 35.8 bits (81), Expect = 0.047 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQD 306 G +RR A+ +P ITT+ GA+A + AI+++K + + +L + Sbjct: 566 GYYIRRAAVDLGIPYITTIPGAKAAVKAIEAVKTGELSVYSLDE 609
>CARB_THEMA (Q9WZ27) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1099 Score = 35.4 bits (80), Expect = 0.062 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSMKNKSI 327 G +R AL K+P +TTV+ RA + AI+ MK SI Sbjct: 1051 GYMIRTTALKRKIPYLTTVESLRAAVAAIRKMKKGSI 1087
>CARB_CLOAB (Q97FT3) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1065 Score = 35.4 bits (80), Expect = 0.062 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSMKNKS-IEILALQDYF 300 G +RR A YKV T +D A+A + AIK + ++ +E A+++YF Sbjct: 1018 GFSIRRKAAEYKVGAFTCIDTAKAFLTAIKVKREEAKVEYRAMKEYF 1064
>CARB_METBA (P13258) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) (Fragment) Length = 398 Score = 34.7 bits (78), Expect = 0.11 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSM-KNKSIEILALQDY 303 G ++RR A+ +KVP ITT+ A A AI++M K + + I ++ +Y Sbjct: 343 GSRIRRAAVDFKVPYITTMQAAIAAAAAIETMKKGEELTIKSINEY 388
>CARB_CORGL (P58939) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1113 Score = 34.7 bits (78), Expect = 0.11 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQD 306 G +R A+ VP+ITTV G A + I++++ + + ALQ+ Sbjct: 1063 GYDIRAAAVTVGVPLITTVQGVTAAVQGIEALREGVVSVRALQE 1106
>CARB_CAUCR (Q9A4D6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1099 Score = 33.5 bits (75), Expect = 0.24 Identities = 17/43 (39%), Positives = 24/43 (55%) Frame = -3 Query: 431 QLRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDY 303 ++RR AL KVP TT GA A AI +++++ LQ Y Sbjct: 1054 EIRRTALMMKVPYYTTSAGALAAAQAIAGAPAEALDVRPLQSY 1096
>PYR1_DICDI (P20054) Protein PYR1-3 [Includes: Glutamine-dependent| carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC 3.5.2.3)] Length = 2185 Score = 31.6 bits (70), Expect = 0.89 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSMK 339 G LRR+A+ ++VP+IT + A+ +D++ MK Sbjct: 1381 GYSLRRVAIDFQVPLITNIKCAKLFVDSLSYMK 1413
>PYR1_SCHPO (Q09794) Protein ura1 [Includes: Glutamine-dependent| carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2)] Length = 2244 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDYF 300 G + RRLA+ Y VP++T V A+ ++AI + S+ + Q F Sbjct: 1489 GYKSRRLAIDYSVPLVTNVKCAKLMIEAICRNLDFSLSTVDFQSSF 1534
>CARB_RALSO (Q8XZ83) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1081 Score = 30.4 bits (67), Expect = 2.0 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = -3 Query: 428 LRRLALAYKVPIITTVDGARATMDAIKSMKNKSI 327 +R ALA +V TT+ GARA ++ +K ++N + Sbjct: 1038 IRTAALANRVTYYTTIAGARAAVEGLKHLQNLDV 1071
>CARB_BUCAI (P57244) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1078 Score = 30.4 bits (67), Expect = 2.0 Identities = 18/35 (51%), Positives = 22/35 (62%) Frame = -3 Query: 422 RLALAYKVPIITTVDGARATMDAIKSMKNKSIEIL 318 R AL YKV TTV+GA AT+ A+ K+IE L Sbjct: 1030 RSALQYKVHYDTTVNGAFATVMALNENPIKNIETL 1064
>CARB2_AQUAE (O67233) Carbamoyl-phosphate synthase large chain, C-terminal| section (EC 6.3.5.5) (Carbamoyl-phosphate synthetase ammonia chain) Length = 537 Score = 30.0 bits (66), Expect = 2.6 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%) Frame = -3 Query: 428 LRRLALAYKVPIITTVDGARATMDAIKSMK-----NKSIEILALQDYF 300 +RR + + VP TT+ A ++AIKS+K K + + +LQ+ + Sbjct: 488 IRRACVQFNVPYYTTMRAGYAVLEAIKSIKKLKEEGKGLSVHSLQEIY 535
>NUCM_TRYBB (P21301) NADH-ubiquinone oxidoreductase 49 kDa subunit homolog (EC| 1.6.5.3) (NADH dehydrogenase subunit 7 homolog) Length = 386 Score = 29.6 bits (65), Expect = 3.4 Identities = 20/55 (36%), Positives = 25/55 (45%) Frame = +3 Query: 222 KGEHIKGMTLRGGLCSWQLLWCISRLEIVLQCKNLNGLVLHTLDGVHGSPSTIHG 386 KGE+ + GLCS L C L I L L G +LH L V G+ + G Sbjct: 328 KGEYCLLLCFCVGLCSRLRLRCADFLHICLLDVCLRGFLLHDLVAVLGNIDVVFG 382
>PYR1_YEAST (P07259) Protein URA1 [Includes: Glutamine-dependent| carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2)] Length = 2214 Score = 29.6 bits (65), Expect = 3.4 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAI 351 G + RRLA+ Y VP++T V A+ ++AI Sbjct: 1457 GYKTRRLAVDYSVPLVTNVKCAKLLIEAI 1485
>CARB_BACCL (P46537) Carbamoyl-phosphate synthase pyrimidine-specific large chain| (EC 6.3.5.5) (Carbamoyl-phosphate synthetase ammonia chain) Length = 1065 Score = 29.3 bits (64), Expect = 4.4 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKSM 342 G ++RR A+ +P +T++D ARA + ++SM Sbjct: 1020 GFRIRREAVENGIPCLTSLDTARAMLQVLESM 1051
>FSHR_FELCA (Q5GJ04) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 695 Score = 29.3 bits (64), Expect = 4.4 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = -3 Query: 230 LSLFHVMSLF*YMNYNLAPCGILLICCCDSHL-LPVSKPHLVAGCLESKI 84 LS +VMSL L ++ICCC +H+ L V P++V+ ++KI Sbjct: 526 LSQLYVMSLL-----VLNVLAFVVICCCYAHIYLTVRNPNIVSSSSDTKI 570
>PYR1_EMENI (O93937) Protein pyrABCN [Includes: Glutamine-dependent| carbamoyl-phosphate (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2)] Length = 2275 Score = 28.9 bits (63), Expect = 5.8 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAI 351 G + RR+A+ Y+ P++T V A+ ++AI Sbjct: 1497 GYRTRRMAVDYQTPLVTNVKNAKILIEAI 1525
>COFE_HALMA (Q5UZQ7) F420-0:gamma-glutamyl ligase (EC 6.3.2.-)| Length = 257 Score = 28.5 bits (62), Expect = 7.6 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = +2 Query: 185 CSSYTRIKTLHGKGRAHKGYDPKGRLVQLATSV 283 C + T + +G+GR+ Y+P GR ++A ++ Sbjct: 35 CVASTIVSKANGRGRSLSSYEPSGRAERIAATI 67
>SYY_MIMIV (Q5UPJ7) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 346 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Frame = +2 Query: 173 MAQDCSSYTRIKTLHGKGR---AHKGYDPKGRL 262 +A++C + R+K L GR A+ G++P GR+ Sbjct: 19 IAEECETLDRLKQLVDSGRIFTAYNGFEPSGRI 51
>CARB_STRR6 (Q8CWR0) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1058 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKS 345 G Q+RR A+ + VP+ T +D A A + ++S Sbjct: 1020 GEQIRRSAIEHGVPLFTALDTANAMLKVLES 1050
>CARB_STRPN (Q97QE4) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1058 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -3 Query: 437 GLQLRRLALAYKVPIITTVDGARATMDAIKS 345 G Q+RR A+ + VP+ T +D A A + ++S Sbjct: 1020 GEQIRRSAIEHGVPLFTALDTANAMLKVLES 1050
>Y4XM_RHISN (P55705) Hypothetical transport protein y4xM| Length = 404 Score = 28.1 bits (61), Expect = 9.9 Identities = 21/55 (38%), Positives = 24/55 (43%) Frame = -2 Query: 384 RGWCSGYHGRHQEYEEQVH*DSCIARLFPAC*CTTEVASCTSRPLGSYPLCALPF 220 +G C+GY Q Y +V ARLF T V S LG L ALPF Sbjct: 115 QGACAGYIAPAQAYGVEVTGGRDRARLFAWLQVATNVGSLGGAFLGGLILDALPF 169 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,133,958 Number of Sequences: 219361 Number of extensions: 1452656 Number of successful extensions: 3458 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 3307 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3457 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
