ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
2dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
3dbj|AK061023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
4ref|XM_463327.1| Oryza sativa (japonica cultivar-group), predic... 119 8e-24
5gb|AY108969.1| Zea mays PCO147581 mRNA sequence 74 4e-10
6gb|DQ308532.1| Triticum monococcum cultivar DV92 carbamoylphosph... 64 4e-07
7emb|AL837505.21| Mouse DNA sequence from clone RP23-181N6 on chr... 42 1.5
8gb|AC138395.8| Mus musculus chromosome 3, clone RP24-128I24, com... 40 5.9
9gb|AC092120.4| Homo sapiens chromosome 16 clone RP1-168P16, comp... 40 5.9
10gb|AC127493.4| Homo sapiens chromosome 18, clone RP11-539C8, com... 40 5.9
11emb|AL109842.7|HSDJ726A1 Human DNA sequence from clone RP4-726A1... 40 5.9
12gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, com... 40 5.9
13dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 40 5.9
14gb|AC005693.3| Arabidopsis thaliana chromosome 2 clone T25N22 ma... 40 5.9
15gb|AC103890.1| 16q24.3 clone, complete sequence 40 5.9
16gb|AC137932.1| Homo sapiens chromosome 16 clone GS2-740I5, compl... 40 5.9
17gb|AC013264.4| Homo sapiens BAC clone RP11-184N4 from 2, complet... 40 5.9
18gb|AC135335.3| Homo sapiens chromosome 18, clone RP13-1026H1, co... 40 5.9
19gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta... 40 5.9 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  125 bits (63), Expect = 1e-25
 Identities = 168/203 (82%)
 Strand = Plus / Minus

                                                                            
Query: 237      aagggtatgaccctaaggggcggcttgtgcagctggcaacttctgtggtgcatcagcagg 296
                ||||| ||||||||||| |||   ||| || ||| |||| ||||| | |||||| | || 
Sbjct: 21893717 aagggcatgaccctaagaggcactttgcgctgcttgcaagttctgggatgcatctgtagt 21893658

                                                                            
Query: 297      ctggaaatagtcttgcaatgcaagaatctcaatggacttgttcttcatactcttgatggc 356
                |||||| || ||||||||||| ||| ||||||| || ||||||||||  || ||||| ||
Sbjct: 21893657 ctggaagtaatcttgcaatgcgagagtctcaattgatttgttcttcaagcttttgatagc 21893598

                                                                            
Query: 357      gtccatggtagcccgagcaccatccacggttgtaattatggggaccttgtaggccagggc 416
                 || |||||||| || || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 21893597 atcgatggtagcacgcgccccatccacggtagtaattatcgggaccttgtaggccagggc 21893538

                                       
Query: 417      tagcctgcgcagctggaggccat 439
                 |  ||||| |||||||||||||
Sbjct: 21893537 caatctgcggagctggaggccat 21893515
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>dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1114B07
          Length = 148060

 Score =  125 bits (63), Expect = 1e-25
 Identities = 168/203 (82%)
 Strand = Plus / Minus

                                                                          
Query: 237    aagggtatgaccctaaggggcggcttgtgcagctggcaacttctgtggtgcatcagcagg 296
              ||||| ||||||||||| |||   ||| || ||| |||| ||||| | |||||| | || 
Sbjct: 123010 aagggcatgaccctaagaggcactttgcgctgcttgcaagttctgggatgcatctgtagt 122951

                                                                          
Query: 297    ctggaaatagtcttgcaatgcaagaatctcaatggacttgttcttcatactcttgatggc 356
              |||||| || ||||||||||| ||| ||||||| || ||||||||||  || ||||| ||
Sbjct: 122950 ctggaagtaatcttgcaatgcgagagtctcaattgatttgttcttcaagcttttgatagc 122891

                                                                          
Query: 357    gtccatggtagcccgagcaccatccacggttgtaattatggggaccttgtaggccagggc 416
               || |||||||| || || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 122890 atcgatggtagcacgcgccccatccacggtagtaattatcgggaccttgtaggccagggc 122831

                                     
Query: 417    tagcctgcgcagctggaggccat 439
               |  ||||| |||||||||||||
Sbjct: 122830 caatctgcggagctggaggccat 122808
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>dbj|AK061023.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D04, full
           insert sequence
          Length = 1096

 Score =  125 bits (63), Expect = 1e-25
 Identities = 168/203 (82%)
 Strand = Plus / Minus

                                                                       
Query: 237 aagggtatgaccctaaggggcggcttgtgcagctggcaacttctgtggtgcatcagcagg 296
           ||||| ||||||||||| |||   ||| || ||| |||| ||||| | |||||| | || 
Sbjct: 994 aagggcatgaccctaagaggcactttgcgctgcttgcaagttctgggatgcatctgtagt 935

                                                                       
Query: 297 ctggaaatagtcttgcaatgcaagaatctcaatggacttgttcttcatactcttgatggc 356
           |||||| || ||||||||||| ||| ||||||| || ||||||||||  || ||||| ||
Sbjct: 934 ctggaagtaatcttgcaatgcgagagtctcaattgatttgttcttcaagcttttgatagc 875

                                                                       
Query: 357 gtccatggtagcccgagcaccatccacggttgtaattatggggaccttgtaggccagggc 416
            || |||||||| || || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 874 atcgatggtagcacgcgccccatccacggtagtaattatcgggaccttgtaggccagggc 815

                                  
Query: 417 tagcctgcgcagctggaggccat 439
            |  ||||| |||||||||||||
Sbjct: 814 caatctgcggagctggaggccat 792
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>ref|XM_463327.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3279

 Score =  119 bits (60), Expect = 8e-24
 Identities = 141/168 (83%)
 Strand = Plus / Minus

                                                                        
Query: 272  gcaacttctgtggtgcatcagcaggctggaaatagtcttgcaatgcaagaatctcaatgg 331
            |||| ||||| | |||||| | || |||||| || ||||||||||| ||| ||||||| |
Sbjct: 3256 gcaagttctgggatgcatctgtagtctggaagtaatcttgcaatgcgagagtctcaattg 3197

                                                                        
Query: 332  acttgttcttcatactcttgatggcgtccatggtagcccgagcaccatccacggttgtaa 391
            | ||||||||||  || ||||| || || |||||||| || || ||||||||||| ||||
Sbjct: 3196 atttgttcttcaagcttttgatagcatcgatggtagcacgcgccccatccacggtagtaa 3137

                                                            
Query: 392  ttatggggaccttgtaggccagggctagcctgcgcagctggaggccat 439
            |||| |||||||||||||||||||| |  ||||| |||||||||||||
Sbjct: 3136 ttatcgggaccttgtaggccagggccaatctgcggagctggaggccat 3089
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>gb|AY108969.1| Zea mays PCO147581 mRNA sequence
          Length = 637

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 121/149 (81%)
 Strand = Plus / Minus

                                                                       
Query: 286 gcatcagcaggctggaaatagtcttgcaatgcaagaatctcaatggacttgttcttcata 345
           ||||| |||| |||||| || |||||||| || || |||||||| ||||||| |||||  
Sbjct: 297 gcatcggcagtctggaagtaatcttgcaaggcgaggatctcaatcgacttgtccttcaag 238

                                                                       
Query: 346 ctcttgatggcgtccatggtagcccgagcaccatccacggttgtaattatggggaccttg 405
           ||||||||||| || ||||  || || || || || |||||||| || || || ||||||
Sbjct: 237 ctcttgatggcatctatggaggcacgtgcgccgtcgacggttgtgataattggcaccttg 178

                                        
Query: 406 taggccagggctagcctgcgcagctggag 434
           ||||| ||||| ||||| || ||||||||
Sbjct: 177 taggcgagggcaagcctacgaagctggag 149
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>gb|DQ308532.1| Triticum monococcum cultivar DV92 carbamoylphosphate synthase large
           subunit-like gene, partial sequence
          Length = 818

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 400 accttgtaggccagggctagcctgcgcagctggaggccat 439
           |||||||||||||| |||||||| ||||||||||||||||
Sbjct: 799 accttgtaggccagagctagcctacgcagctggaggccat 760
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>emb|AL837505.21| Mouse DNA sequence from clone RP23-181N6 on chromosome 4, complete
              sequence
          Length = 186045

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 202    aataaagacattacatggaaa 222
              |||||||||||||||||||||
Sbjct: 110194 aataaagacattacatggaaa 110214
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>gb|AC138395.8| Mus musculus chromosome 3, clone RP24-128I24, complete sequence
          Length = 171020

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tattctgtagatagatagat 39
              ||||||||||||||||||||
Sbjct: 138337 tattctgtagatagatagat 138356
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>gb|AC092120.4| Homo sapiens chromosome 16 clone RP1-168P16, complete sequence
          Length = 113368

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 290  cagcaggctggaaatagtct 309
            ||||||||||||||||||||
Sbjct: 2058 cagcaggctggaaatagtct 2077
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>gb|AC127493.4| Homo sapiens chromosome 18, clone RP11-539C8, complete sequence
          Length = 105459

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   ttgttcttcatactcttgat 353
             ||||||||||||||||||||
Sbjct: 89901 ttgttcttcatactcttgat 89920
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>emb|AL109842.7|HSDJ726A1 Human DNA sequence from clone RP4-726A1 on chromosome 6q22.2-23.1
             Contains part of the TCBA1 gene for T-cell lymphoma
             breakpoint associated target 1, complete sequence
          Length = 120998

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   gctggaaatagtcttgcaat 315
             ||||||||||||||||||||
Sbjct: 64505 gctggaaatagtcttgcaat 64486
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>gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, complete sequence
          Length = 153684

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    tattctgtagatagatagat 39
             ||||||||||||||||||||
Sbjct: 78720 tattctgtagatagatagat 78739
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>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 143     tatcgcagcagcagataagc 162
               ||||||||||||||||||||
Sbjct: 1191289 tatcgcagcagcagataagc 1191270
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>gb|AC005693.3| Arabidopsis thaliana chromosome 2 clone T25N22 map mi310, complete
             sequence
          Length = 80891

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    tactcttacacattagaaat 67
             ||||||||||||||||||||
Sbjct: 13207 tactcttacacattagaaat 13226
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>gb|AC103890.1| 16q24.3 clone, complete sequence
          Length = 129848

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 290  cagcaggctggaaatagtct 309
            ||||||||||||||||||||
Sbjct: 8895 cagcaggctggaaatagtct 8876
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>gb|AC137932.1| Homo sapiens chromosome 16 clone GS2-740I5, complete sequence
          Length = 129785

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 290    cagcaggctggaaatagtct 309
              ||||||||||||||||||||
Sbjct: 120891 cagcaggctggaaatagtct 120910
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>gb|AC013264.4| Homo sapiens BAC clone RP11-184N4 from 2, complete sequence
          Length = 149445

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 49     actcttacacattagaaatacaaa 72
              ||||||| ||||||||||||||||
Sbjct: 118148 actcttaaacattagaaatacaaa 118125
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>gb|AC135335.3| Homo sapiens chromosome 18, clone RP13-1026H1, complete sequence
          Length = 155498

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   ttgttcttcatactcttgat 353
             ||||||||||||||||||||
Sbjct: 32039 ttgttcttcatactcttgat 32020
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>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome
          Length = 1751377

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 392     ttatggggaccttgtaggccaggg 415
               ||||||||||| ||||||||||||
Sbjct: 1599060 ttatggggaccgtgtaggccaggg 1599083


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,056,119
Number of Sequences: 3902068
Number of extensions: 5056119
Number of successful extensions: 114461
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114386
Number of HSP's gapped (non-prelim): 75
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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