ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl42f01 |
|---|---|
| Clone Library Name | barley_pub |
>SYM_METTH (O26687) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 651 Score = 30.8 bits (68), Expect = 0.80 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = -2 Query: 334 GEKDFSEQKPWEMLSEAPSYPARFVHLLPKHAWHSAKFSRLAHPGA 197 G K F++Q+PW+ + E+P+ + +HL A + K R P A Sbjct: 447 GNKYFNDQEPWKAVKESPARASTCLHLCNLLAANLGKLLRPFMPSA 492
>ARGC_EHRRW (Q5HA98) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 347 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = -2 Query: 328 KDFSEQKPWEMLSEAPSYPARFVHLLPKHAWHSAKFSR-LAHPGAYLHAVLLPAVRTLR 155 KD K W P FV+ L + W K SR +A PG Y + L+P LR Sbjct: 108 KDIDTYKEWYGAHCCPDLIQDFVYGLTEIYWEEIKKSRFVACPGCYATSALVPLFPLLR 166
>ARGC_EHRRG (Q5FGD5) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 347 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = -2 Query: 328 KDFSEQKPWEMLSEAPSYPARFVHLLPKHAWHSAKFSR-LAHPGAYLHAVLLPAVRTLR 155 KD K W P FV+ L + W K SR +A PG Y + L+P LR Sbjct: 108 KDIDTYKEWYGAHCCPDLIQDFVYGLTEIYWEEIKKSRFVACPGCYATSALVPLFPLLR 166
>SODM2_HALME (O08460) Superoxide dismutase [Mn] 2 (EC 1.15.1.1) (Fragment)| Length = 146 Score = 29.3 bits (64), Expect = 2.3 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +1 Query: 148 LIYEGYVQQAAALHVNKHPDAPIWRTWP-NAMHVWE 252 L+Y+ +Q L V KH D +W P A+ VWE Sbjct: 94 LVYDPVTKQLRNLAVQKHNDGALWSAHPILALDVWE 129
>PDR1_ORYSA (Q7PC80) Probable pleiotropic drug resistance protein 1| Length = 1468 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -1 Query: 116 NPFHHFS*SVDCCPIWWAWNCTCCSSDFTVF 24 N F F S P+WW W C C +T++ Sbjct: 1373 NLFTGFVISRPATPVWWRWYCWICPVAWTLY 1403
>MT_PARLI (P80367) Metallothionein (MT)| Length = 65 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = -1 Query: 248 QTCMAFGQVLQIGASGCLFTCSAAAC-CT 165 Q C G+ + GAS C TCS AAC CT Sbjct: 19 QECCITGKCCKDGASVCCGTCSNAACKCT 47
>SODM1_HALVO (Q03300) Superoxide dismutase [Mn] 1 (EC 1.15.1.1)| Length = 200 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +1 Query: 148 LIYEGYVQQAAALHVNKHPDAPIWRTWP-NAMHVWEAGGRNELGMKELRSTFPMAF 312 L+Y+ + Q + V+KH +W + P A+ VWE ++ G R F AF Sbjct: 126 LVYDSFSNQLRNVVVDKHDQGALWGSHPILALDVWEHSYYHDYG--PARGDFVSAF 179
>NIA2_HORVU (P27969) Nitrate reductase [NADH] (EC 1.7.1.1) (NR) (Fragment)| Length = 912 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Frame = +1 Query: 133 PPMTNLIYEGYVQQAAALHVNKHPDAP--IWRTWPNAMHVWEAGGR-NELGMKELRSTFP 303 PP+ L++ G++ A +V H P W TW + V R L M EL + FP Sbjct: 119 PPLARLMHHGFITPAPLHYVRNHGAVPRGDWATW--TVEVTGLVRRPARLTMDELANGFP 176 Query: 304 MAFV 315 A V Sbjct: 177 AAEV 180
>VGFR3_MOUSE (P35917) Vascular endothelial growth factor receptor 3 precursor| (EC 2.7.10.1) (VEGFR-3) (Tyrosine-protein kinase receptor FLT4) Length = 1363 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = +1 Query: 133 PPMTNLIYEGYVQQAA-ALHVNKHPDAPIWRTWPNAMHVWEAGGRN 267 PP N+ + YV +L ++ P+ TWP A V GG++ Sbjct: 29 PPTLNITEDSYVIDTGDSLSISCRGQHPLEWTWPGAQEVLTTGGKD 74
>PDR3_ORYSA (Q8GU90) Pleiotropic drug resistance protein 3| Length = 1457 Score = 28.5 bits (62), Expect = 4.0 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -1 Query: 77 PIWWAWNCTCCSSDFTVF 24 PIWW W C C +T++ Sbjct: 1375 PIWWRWYCWACPVAWTLY 1392
>NIA1_ORYSA (P16081) Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)| Length = 916 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +1 Query: 133 PPMTNLIYEGYVQQAAALHVNKHPDAP--IWRTW 228 PP+ L++ G++ AA +V H P W TW Sbjct: 125 PPLAELMHHGFITPAALHYVANHGAVPRGDWSTW 158
>NIA1_HORVU (P27967) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)| Length = 915 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Frame = +1 Query: 133 PPMTNLIYEGYVQQAAALHVNKHPDAP--IWRTWPNAMHVWEAGGR-NELGMKELRSTFP 303 PP+ L++ G++ A +V H P W TW + V R L M EL + FP Sbjct: 122 PPLARLMHHGFITPAPLHYVRNHGAVPRGDWATW--TVEVTGLVRRPARLTMDELANGFP 179 Query: 304 MAFV 315 A V Sbjct: 180 AAEV 183
>SODM2_HALVO (Q03301) Superoxide dismutase [Mn] 2 (EC 1.15.1.1)| Length = 199 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +1 Query: 148 LIYEGYVQQAAALHVNKHPDAPIWRTWP-NAMHVWEAGGRNELGMKELRSTFPMAF 312 L+Y+ + Q + V+KH +W + P A+ VWE ++ G R F AF Sbjct: 125 LVYDSFSNQLRNVVVDKHDQGALWGSHPILALDVWEHSYYHDYG--PARGDFVSAF 178
>NOL9_HUMAN (Q5SY16) Nucleolar protein 9| Length = 702 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +3 Query: 291 LNISHGFCSLKSFSPACSLKLLDHPYLARPQIQTAWFG 404 LN+ S+++FSP CS+ LL+H A T++ G Sbjct: 203 LNLDDRRWSMQNFSPQCSIVLLEHLKTATVNFITSYPG 240
>PDR2_ORYSA (Q8GU92) Probable pleiotropic drug resistance protein 2| Length = 1464 Score = 28.1 bits (61), Expect = 5.2 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -1 Query: 77 PIWWAWNCTCCSSDFTVF 24 PIWW W C C +T++ Sbjct: 1382 PIWWRWYCWICPVAWTLY 1399
>ERN1_MOUSE (Q9EQY0) Serine/threonine-protein kinase/endoribonuclease IRE1| precursor (Inositol-requiring protein 1) (IRE1a) (Ire1-alpha) (Endoplasmic reticulum-to-nucleus signaling 1) [Includes: Serine/threonine-protein kinase (EC 2.7.11.1); Endoribonucle Length = 977 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = +1 Query: 166 VQQAAALHVNKHPDAPIWRTWPNAMHVWEAGGRNELGMKELRSTFPMAFVH*SPSR 333 +++ L V H + P + PN ++ GG+N G+ +L T P V SP R Sbjct: 58 LKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGGKNNEGLTKLPFTIP-ELVQASPCR 112
>C4AA1_DROME (Q9V7G5) Probable cytochrome P450 4aa1 (EC 1.14.-.-) (CYPIVAA1)| Length = 514 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = -2 Query: 181 LLPAVRTL-RKLGLSSEEENKLIIHFTISASL*IVAPYGGHGIAHVVP 41 L P+V + RKLG EE +L H + S + PY H +AH+ P Sbjct: 378 LYPSVPLIARKLG----EEVRLAKHTLPAGSNVFICPYATHRLAHIYP 421
>BCSB2_ACEXY (O82860) Cyclic di-GMP-binding protein precursor (Cellulose| synthase regulatory subunit) (Cellulose synthase protein B) (CDGBP) Length = 802 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +1 Query: 130 LPPMTNLIYEGYVQQAAALHVNKHPDAPIWRTWPNAMHV 246 L P + L EGY A A+ PD WR PN ++V Sbjct: 388 LVPDSALQAEGYAPGALAVPFRVSPDLYTWRDRPNKLNV 426
>KUP_VIBCH (Q9KM59) Probable potassium transport system protein kup| Length = 620 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -2 Query: 256 LLPKHA-WHSAKFSRLAHPGAYLHAVLLPAVRTLRKLGL 143 LL HA WH+ + R +P +H VLL TL LGL Sbjct: 181 LLGAHAIWHAPQVLRALNPAYAVHFVLLYGQHTLFILGL 219
>PDR4_ORYSA (Q8GU89) Pleiotropic drug resistance protein 4| Length = 1450 Score = 27.7 bits (60), Expect = 6.8 Identities = 7/18 (38%), Positives = 11/18 (61%) Frame = -1 Query: 77 PIWWAWNCTCCSSDFTVF 24 P+WW W C C +T++ Sbjct: 1367 PVWWRWYCWICPVAWTLY 1384
>HPS1_MOUSE (O08983) Hermansky-Pudlak syndrome 1 protein homolog| Length = 704 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/65 (24%), Positives = 30/65 (46%) Frame = -2 Query: 217 RLAHPGAYLHAVLLPAVRTLRKLGLSSEEENKLIIHFTISASL*IVAPYGGHGIAHVVPV 38 RL HP ++ ++ + S E + ++H + ++A Y GHG + + P Sbjct: 173 RLIHPQLCEQSIETLERHVVQAINASPERGGEEVLHAFLLVHCKLLAFYSGHGASTLRPA 232 Query: 37 ILLSL 23 LL+L Sbjct: 233 DLLAL 237
>THYX_PYRAE (Q8ZWD6) Thymidylate synthase thyX (EC 2.1.1.148) (TS) (TSase)| Length = 244 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%) Frame = +1 Query: 163 YVQQAAALHVNKHPDAPIWRTWPN-AMHVWE 252 Y QA HV A WR WPN A VWE Sbjct: 168 YAAQAEIRHVCWQMFAHAWRLWPNLARLVWE 198
>SODM1_HALME (O08461) Superoxide dismutase [Mn] 1 (EC 1.15.1.1) (Fragment)| Length = 144 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +1 Query: 148 LIYEGYVQQAAALHVNKHPDAPIWRTWP-NAMHVWEAGGRNELG 276 L+Y+ + Q + V+KH +W + P A+ VWE ++ G Sbjct: 92 LVYDSFSNQLRNVVVDKHDQGALWGSHPILALDVWEHSYYHDYG 135
>CTCF_CHICK (Q08705) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 728 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -2 Query: 382 CGLAKYG*SSSFKLQAGEKDFSEQKPWEML---SEAPSYPARFVHLLPKHAWHSAKF 221 C L Y ++KL+ + S +KP+E + +H+L KH + AKF Sbjct: 381 CSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKF 437
>YB78_YEAST (P38324) Hypothetical 35.9 kDa protein in MCX1-PBP2 intergenic| region Length = 304 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = -2 Query: 310 KPWEMLSEAPSYPARFVHLLPKHAW 236 +PWEM+ +P++ L +HAW Sbjct: 61 RPWEMIMIVRGFPSKIAALQFEHAW 85
>Y113_ENCCU (Q8ST53) Hypothetical protein ECU01_0130/ECU01_1480/ECU08_0060| Length = 366 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -2 Query: 304 WEMLSEAPSYPARFVHLLPKHAWH 233 WE+ E Y R + LLP AWH Sbjct: 83 WEIEKEERRYTERVIKLLPGLAWH 106
>CTCF_MOUSE (Q61164) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 736 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -2 Query: 382 CGLAKYG*SSSFKLQAGEKDFSEQKPWEML---SEAPSYPARFVHLLPKHAWHSAKF 221 C L Y ++KL+ + S +KP+E + +H+L KH + AKF Sbjct: 381 CSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKF 437
>CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 737 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -2 Query: 382 CGLAKYG*SSSFKLQAGEKDFSEQKPWEML---SEAPSYPARFVHLLPKHAWHSAKF 221 C L Y ++KL+ + S +KP+E + +H+L KH + AKF Sbjct: 381 CSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKF 437
>CTCF_HUMAN (P49711) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 727 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -2 Query: 382 CGLAKYG*SSSFKLQAGEKDFSEQKPWEML---SEAPSYPARFVHLLPKHAWHSAKF 221 C L Y ++KL+ + S +KP+E + +H+L KH + AKF Sbjct: 381 CSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKF 437 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,376,832 Number of Sequences: 219361 Number of extensions: 1266092 Number of successful extensions: 3500 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3383 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3500 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
