ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_966775.1| PREDICTED: Tribolium castaneum similar to CG820... 44 0.17
2gb|AE017263.1| Mesoplasma florum L1 complete genome 40 2.7
3gb|AC156987.7| Mus musculus chromosome 7, clone RP23-78K13, comp... 40 2.7
4emb|CR389378.1| Gallus gallus finished cDNA, clone ChEST987b19 40 2.7
5dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 2.7
6dbj|AP004489.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 2.7
7emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2... 40 2.7

>ref|XM_966775.1| PREDICTED: Tribolium castaneum similar to CG8202-PA (LOC660552), mRNA
          Length = 2919

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 6    caacatgtcaatgccactcaaataaa 31
            ||||||||||||| ||||||||||||
Sbjct: 2538 caacatgtcaatgacactcaaataaa 2513



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>gb|AE017263.1| Mesoplasma florum L1 complete genome
          Length = 793224

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 22    ctcaaataaaaatatgtcttcatgtaaa 49
             ||||||||||||||| | ||||||||||
Sbjct: 49343 ctcaaataaaaatatcttttcatgtaaa 49370



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>gb|AC156987.7| Mus musculus chromosome 7, clone RP23-78K13, complete sequence
          Length = 231140

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 26    aataaaaatatgtcttcatgtaaa 49
             |||||||||||||| |||||||||
Sbjct: 97877 aataaaaatatgtcctcatgtaaa 97854



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>emb|CR389378.1| Gallus gallus finished cDNA, clone ChEST987b19
          Length = 993

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 58  tcccaagagcaacttaagaa 77
           ||||||||||||||||||||
Sbjct: 605 tcccaagagcaacttaagaa 586



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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 44      tgtaaacacaacaatcccaa 63
               ||||||||||||||||||||
Sbjct: 1530384 tgtaaacacaacaatcccaa 1530403



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>dbj|AP004489.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04I02, TM0021,
             complete sequence
          Length = 83700

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    acaacaatcccaagagcaac 70
             ||||||||||||||||||||
Sbjct: 37347 acaacaatcccaagagcaac 37328



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>emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2561F5 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 116067

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 29    aaaaatatgtcttcatgtaaacac 52
             |||||||||| |||||||||||||
Sbjct: 41111 aaaaatatgtattcatgtaaacac 41134


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,582,326
Number of Sequences: 3902068
Number of extensions: 2582326
Number of successful extensions: 165500
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 165459
Number of HSP's gapped (non-prelim): 41
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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