ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PWP1_YEAST (P21304) Periodic tryptophan protein 1 30 2.0
2CCG1_MOUSE (O70578) Voltage-dependent calcium channel gamma-1 su... 28 5.7
3NAS31_CAEEL (Q7JLI1) Zinc metalloproteinase nas-31 precursor (EC... 28 5.7
4ZN267_HUMAN (Q14586) Zinc finger protein 267 (Zinc finger protei... 27 9.8

>PWP1_YEAST (P21304) Periodic tryptophan protein 1|
          Length = 576

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 276 TSIVKSHHPMVYTQVRHEEYTRPFIYSCSVIHVGRLLNVSAHNPARS 136
           T  + +HH      + H +Y R  + S S  H  +L ++++ N ARS
Sbjct: 278 TGHITTHHTDAVLSMAHNKYFRSVLASTSADHTVKLWDLNSGNAARS 324



to top

>CCG1_MOUSE (O70578) Voltage-dependent calcium channel gamma-1 subunit|
           (Dihydropyridine-sensitive L-type, skeletal muscle
           calcium channel gamma subunit)
          Length = 223

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
 Frame = -1

Query: 303 LLITDPL*MTSIVKSHHPMVYTQVRHEEYTRPFIYSCSVIHVGR----LLNVSAHNPARS 136
           +L+   L M ++V  H  ++   + H   T      C   H G        V+ HN  +S
Sbjct: 16  ILVGGVLAMVAVVTDHWAVLSPHLEHHNET------CEAAHFGLWRICTARVAVHNKDKS 69

Query: 135 CEH 127
           CEH
Sbjct: 70  CEH 72



to top

>NAS31_CAEEL (Q7JLI1) Zinc metalloproteinase nas-31 precursor (EC 3.4.24.21)|
           (Nematode astacin 31)
          Length = 611

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
 Frame = +1

Query: 34  STTTLSFKQRQ*YK--YFPKYSLGLHMINLINRVLT----------ATSW--IVC*NIQQ 171
           + +T S  +RQ Y+  Y+P  + G  +    +R  T             W  + C NI Q
Sbjct: 149 TVSTASRARRQAYRDRYYPSTTWGSSVYYYYDRTATPKIVKAFEQAVAFWQNVTCINIMQ 208

Query: 172 TTNMNNRTRVNKGSG 216
           ++   NR RV KG G
Sbjct: 209 SSTAINRIRVFKGQG 223



to top

>ZN267_HUMAN (Q14586) Zinc finger protein 267 (Zinc finger protein HZF2)|
          Length = 743

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 301 AYHRPFINDKHRQVASSDG-LYSSSARRVHQTLYLLLFCYSCWSFAECF 158
           +Y   FI +K+    +S+  L  SS+ + HQ  Y L   Y C  F E F
Sbjct: 205 SYRNVFIGEKNYHCNNSEKTLNQSSSPKNHQENYFLEKQYKCKEFEEVF 253


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,764,643
Number of Sequences: 219361
Number of extensions: 772872
Number of successful extensions: 1532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top