ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing pr... 31 0.80
2SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing pr... 31 0.80
3SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing pr... 31 0.80
4SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing prot... 31 0.80
5URED_SYNY3 (P73047) Urease accessory protein ureD 30 1.8
6DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain)... 28 4.0
7SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6... 28 4.0
8SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6... 28 4.0
9DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5) 28 4.0
10DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5) 28 4.0
11Y1356_MYCBO (P64806) Hypothetical protein Mb1356 28 5.2
12Y1322_MYCTU (P64805) Hypothetical protein Rv1322/MT1363.1 28 5.2
13NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO ... 28 6.8
14POLG_TMEVD (P13899) Genome polyprotein [Contains: Coat protein V... 27 8.8
15PDXH_VIBF1 (Q5DYB5) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.... 27 8.8
16POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein V... 27 8.8

>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 365 QEKAKKERLRLWQYGDVESD 306
           QE AK  RL LW+YGD  +D
Sbjct: 882 QESAKSARLNLWRYGDFRAD 901



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>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (EBNA2 coactivator
           p100)
          Length = 910

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 365 QEKAKKERLRLWQYGDVESD 306
           QE AK  RL LW+YGD  +D
Sbjct: 882 QESAKSARLNLWRYGDFRAD 901



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>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 365 QEKAKKERLRLWQYGDVESD 306
           QE AK  RL LW+YGD  +D
Sbjct: 882 QESAKSARLNLWRYGDFRAD 901



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>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (SND p102) (p105
           coactivator)
          Length = 909

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 365 QEKAKKERLRLWQYGDVESD 306
           QE AK  RL LW+YGD  +D
Sbjct: 881 QESAKSARLNLWRYGDFRAD 900



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>URED_SYNY3 (P73047) Urease accessory protein ureD|
          Length = 270

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 270 AASVDERRQWHAQSWFRYESFGHRAKLSRELI*KLSKKERLY 145
           A++V+    W A  W RY+  GHR ++   L+    K +R +
Sbjct: 4   ASTVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45



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>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)|
          Length = 851

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 337 ACGSMETLNPTRRSKLQAGGDPRRVGRREKA 245
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)|
           (Lysine--tRNA ligase 2) (LysRS 2)
          Length = 1172

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 43  VLPLQRRNAVHKGHRP 90
           VLP  RRN VH GH P
Sbjct: 628 VLPFSRRNRVHTGHHP 643



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>SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)|
           (Lysine--tRNA ligase 2) (LysRS 2)
          Length = 1172

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 43  VLPLQRRNAVHKGHRP 90
           VLP  RRN VH GH P
Sbjct: 628 VLPFSRRNRVHTGHHP 643



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>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)|
          Length = 867

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 337 ACGSMETLNPTRRSKLQAGGDPRRVGRREKA 245
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)|
          Length = 864

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 337 ACGSMETLNPTRRSKLQAGGDPRRVGRREKA 245
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>Y1356_MYCBO (P64806) Hypothetical protein Mb1356|
          Length = 98

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 279 ETPAASVDERRQWHAQSW 226
           + P A VD+RR WH   W
Sbjct: 68  DLPQAGVDDRRHWHTPCW 85



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>Y1322_MYCTU (P64805) Hypothetical protein Rv1322/MT1363.1|
          Length = 98

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 279 ETPAASVDERRQWHAQSW 226
           + P A VD+RR WH   W
Sbjct: 68  DLPQAGVDDRRHWHTPCW 85



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>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate|
           synthetase B 2)
          Length = 536

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 245 CLLSSTDAAGVSSRLELAPPRRIQ 316
           C  S TD AG +SRL L  P RI+
Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419



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>POLG_TMEVD (P13899) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2301

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +1

Query: 247  PSLVYRRGG-GLLPPG---ACXXXXXXXXPYCHRRSLSFFAFSWNCSRFSRAVF 396
            P L +R  G GL P G    C        P+   RSL    F+  CS FS +++
Sbjct: 949  PVLTFRIPGFGLTPAGRMLVCMGEKPAHGPFTSSRSLYHVIFTATCSSFSFSIY 1002



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>PDXH_VIBF1 (Q5DYB5) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP|
           oxidase) (PNPOx)
          Length = 211

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 407 TKERKTALENLEQFQEKAKKERLRLW 330
           T E+ TALEN++ F  + K+ ++  W
Sbjct: 110 TAEKLTALENMKYFTSRPKESQIAAW 135



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>POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2303

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +1

Query: 247  PSLVYRRGG-GLLPPG---ACXXXXXXXXPYCHRRSLSFFAFSWNCSRFSRAVF 396
            P L +R  G GL P G    C        P+   RSL    F+  CS FS +++
Sbjct: 951  PVLTFRIPGFGLTPAGRMLVCMGEQPAHGPFTSSRSLYHVIFTATCSSFSFSIY 1004


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,580,999
Number of Sequences: 219361
Number of extensions: 865276
Number of successful extensions: 2622
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2622
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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