ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016256.1| Zea mays clone Contig89 mRNA sequence 129 8e-27
2ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 111 2e-21
3gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA bindin... 111 2e-21
4gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA bindin... 111 2e-21
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
6dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
7dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
8dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
9dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
10gb|AY112472.1| Zea mays CL152_1 mRNA sequence 58 2e-05
11emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 i... 44 0.35
12gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, com... 42 1.4
13gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, com... 42 1.4
14gb|AF091434.1| Homo sapiens secretory growth factor-like protein... 42 1.4
15gb|AY358493.1| Homo sapiens clone DNA29101 fallotein (VEGF-E) (U... 42 1.4
16gb|BC065490.1| Homo sapiens cDNA clone IMAGE:6537664, **** WARNI... 42 1.4
17gb|BC051876.1| Homo sapiens platelet derived growth factor C, mR... 42 1.4
18gb|BC041783.1| Homo sapiens platelet derived growth factor C, mR... 42 1.4
19ref|NM_016205.1| Homo sapiens platelet derived growth factor C (... 42 1.4
20gb|AF244813.1|AF244813 Homo sapiens platelet-derived growth fact... 42 1.4
21gb|BC094746.1| Homo sapiens cDNA clone IMAGE:5315195 42 1.4
22gb|AC092608.2| Homo sapiens BAC clone RP11-154F14 from 4, comple... 42 1.4
23emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence 42 1.4
24dbj|AP004932.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.4
25emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chro... 42 1.4
26gb|AC159227.3| Mus musculus BAC clone RP24-334D12 from chromosom... 40 5.5
27gb|BC061968.1| Rattus norvegicus ATPase, Na+/K+ transporting, al... 40 5.5
28emb|CR707955.2|CNS0G97J Tetraodon nigroviridis full-length cDNA 40 5.5
29emb|BX323825.19| Zebrafish DNA sequence from clone DKEYP-51B2 in... 40 5.5
30emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k... 40 5.5
31emb|X53234.1|RNNKAA1B Rat NKAA1 gene for Na+/K+ -ATPase alpha1 s... 40 5.5
32ref|NM_012504.1| Rattus norvegicus ATPase, Na+/K+ transporting, ... 40 5.5
33emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in... 40 5.5
34gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, comple... 40 5.5
35gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, comple... 40 5.5
36gb|AC112484.8| Homo sapiens 3 BAC RP11-723O4 (Roswell Park Cance... 40 5.5
37emb|BX908726.21| Zebrafish DNA sequence from clone DKEY-74I2 in ... 40 5.5
38emb|X05882.1|RNATPAR Rat mRNA for sodium/potassium-transporting ... 40 5.5
39dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.5
40dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.5
41gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, comple... 40 5.5
42gb|M28647.1|RATNALPH1 Rattus norvegicus Na,K-ATPase alpha-1 subu... 40 5.5
43gb|M14511.1|RATATPA1 Rat Na+,K+-ATPase alpha isoform catalytic s... 40 5.5 
>gb|BT016256.1| Zea mays clone Contig89 mRNA sequence
          Length = 1657

 Score =  129 bits (65), Expect = 8e-27
 Identities = 104/117 (88%)
 Strand = Plus / Minus

                                                                        
Query: 295  tgctcctcctcgtcggattcaacgtctccatactgccacaggcgcagcctttccttcttc 354
            ||||| |||||||| |||||||| ||||| |||||||| |  ||||||||||||||||| 
Sbjct: 1350 tgctcgtcctcgtccgattcaacatctccgtactgccaaatccgcagcctttccttcttt 1291

                                                                     
Query: 355  gccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttgtgtcc 411
            ||||| |||||||||||||||||||||| |||||| |||||||||||| | ||||||
Sbjct: 1290 gccttgtcctggaactgttccaggttctggagagccgtcttcctctccctagtgtcc 1234
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>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 287  ctggagcttgctcctcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 346
            ||||||||||||| |||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 3153 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3094

                                                                    
Query: 347  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcc 402
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| ||||||
Sbjct: 3093 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 3038



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 90   ttattgagcttaggggaaaaacaatgtat 118
            ||||| || ||||||||||||||||||||
Sbjct: 3443 ttattaagtttaggggaaaaacaatgtat 3415
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>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            gene, complete cds
          Length = 5478

 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 287  ctggagcttgctcctcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 346
            ||||||||||||| |||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 5271 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 5212

                                                                    
Query: 347  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcc 402
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| ||||||
Sbjct: 5211 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 5156
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>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            mRNA, complete cds
          Length = 2961

 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 287  ctggagcttgctcctcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 346
            ||||||||||||| |||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 2932 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 2873

                                                                    
Query: 347  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcc 402
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| ||||||
Sbjct: 2872 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 2817
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/116 (87%)
 Strand = Plus / Plus

                                                                            
Query: 287      ctggagcttgctcctcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 346
                ||||||||||||| |||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 19118661 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 19118720

                                                                        
Query: 347      ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcc 402
                ||||||| || |||||||||||||||||||| |||| |||||| | ||| ||||||
Sbjct: 19118721 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 19118776



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 90       ttattgagcttaggggaaaaacaatgtat 118
                ||||| || ||||||||||||||||||||
Sbjct: 19118371 ttattaagtttaggggaaaaacaatgtat 19118399
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>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/116 (87%)
 Strand = Plus / Plus

                                                                         
Query: 287   ctggagcttgctcctcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 346
             ||||||||||||| |||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 16910 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 16969

                                                                     
Query: 347   ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcc 402
             ||||||| || |||||||||||||||||||| |||| |||||| | ||| ||||||
Sbjct: 16970 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 17025



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 90    ttattgagcttaggggaaaaacaatgtat 118
             ||||| || ||||||||||||||||||||
Sbjct: 16620 ttattaagtttaggggaaaaacaatgtat 16648
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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/116 (87%)
 Strand = Plus / Plus

                                                                          
Query: 287    ctggagcttgctcctcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 346
              ||||||||||||| |||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 124182 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 124241

                                                                      
Query: 347    ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcc 402
              ||||||| || |||||||||||||||||||| |||| |||||| | ||| ||||||
Sbjct: 124242 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 124297



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 90     ttattgagcttaggggaaaaacaatgtat 118
              ||||| || ||||||||||||||||||||
Sbjct: 123892 ttattaagtttaggggaaaaacaatgtat 123920
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>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
            insert sequence
          Length = 3547

 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 287  ctggagcttgctcctcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 346
            ||||||||||||| |||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 3151 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3092

                                                                    
Query: 347  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcc 402
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| ||||||
Sbjct: 3091 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 3036



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 90   ttattgagcttaggggaaaaacaatgtat 118
            ||||| || ||||||||||||||||||||
Sbjct: 3441 ttattaagtttaggggaaaaacaatgtat 3413
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>dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D08, full
            insert sequence
          Length = 1551

 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 287  ctggagcttgctcctcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 346
            ||||||||||||| |||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 1169 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 1110

                                                                    
Query: 347  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcc 402
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| ||||||
Sbjct: 1109 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 1054



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 90   ttattgagcttaggggaaaaacaatgtat 118
            ||||| || ||||||||||||||||||||
Sbjct: 1459 ttattaagtttaggggaaaaacaatgtat 1431
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>gb|AY112472.1| Zea mays CL152_1 mRNA sequence
          Length = 1436

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 367 aactgttccaggttctcgagagctgtcttcctctcctttgtgtcc 411
           |||||||||||||||| |||||| |||||||||||| | ||||||
Sbjct: 976 aactgttccaggttctggagagccgtcttcctctccctagtgtcc 932
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>emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 in linkage group 13,
              complete sequence
          Length = 165993

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 171    ttcatataagctctcgactgagtttc 196
              |||||||| |||||||||||||||||
Sbjct: 151331 ttcatatatgctctcgactgagtttc 151306
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>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence
          Length = 275646

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 90     ttattgagcttaggggaaaaa 110
              |||||||||||||||||||||
Sbjct: 246866 ttattgagcttaggggaaaaa 246886
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>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence
          Length = 257203

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    ttattgagcttaggggaaaaa 110
             |||||||||||||||||||||
Sbjct: 88447 ttattgagcttaggggaaaaa 88467
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>gb|AF091434.1| Homo sapiens secretory growth factor-like protein fallotein mRNA,
            complete cds
          Length = 3007

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 108  aaacaatgtatgtagttctcttcttctaa 136
            |||| ||| ||||||||||||||||||||
Sbjct: 2167 aaaccatgaatgtagttctcttcttctaa 2139
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>gb|AY358493.1| Homo sapiens clone DNA29101 fallotein (VEGF-E) (UNQ174) mRNA,
            complete cds
          Length = 2849

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 108  aaacaatgtatgtagttctcttcttctaa 136
            |||| ||| ||||||||||||||||||||
Sbjct: 1960 aaaccatgaatgtagttctcttcttctaa 1932
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>gb|BC065490.1| Homo sapiens cDNA clone IMAGE:6537664, **** WARNING: chimeric clone
            ****
          Length = 3783

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 108  aaacaatgtatgtagttctcttcttctaa 136
            |||| ||| ||||||||||||||||||||
Sbjct: 1990 aaaccatgaatgtagttctcttcttctaa 1962
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>gb|BC051876.1| Homo sapiens platelet derived growth factor C, mRNA (cDNA clone
            IMAGE:6527736), containing frame-shift errors
          Length = 2655

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 108  aaacaatgtatgtagttctcttcttctaa 136
            |||| ||| ||||||||||||||||||||
Sbjct: 1805 aaaccatgaatgtagttctcttcttctaa 1777
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>gb|BC041783.1| Homo sapiens platelet derived growth factor C, mRNA (cDNA clone
            IMAGE:4614150), containing frame-shift errors
          Length = 2826

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 108  aaacaatgtatgtagttctcttcttctaa 136
            |||| ||| ||||||||||||||||||||
Sbjct: 1961 aaaccatgaatgtagttctcttcttctaa 1933
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>ref|NM_016205.1| Homo sapiens platelet derived growth factor C (PDGFC), mRNA
          Length = 3007

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 108  aaacaatgtatgtagttctcttcttctaa 136
            |||| ||| ||||||||||||||||||||
Sbjct: 2167 aaaccatgaatgtagttctcttcttctaa 2139
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>gb|AF244813.1|AF244813 Homo sapiens platelet-derived growth factor C mRNA, complete cds
          Length = 2152

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 108  aaacaatgtatgtagttctcttcttctaa 136
            |||| ||| ||||||||||||||||||||
Sbjct: 1864 aaaccatgaatgtagttctcttcttctaa 1836
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>gb|BC094746.1| Homo sapiens cDNA clone IMAGE:5315195
          Length = 1932

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 108  aaacaatgtatgtagttctcttcttctaa 136
            |||| ||| ||||||||||||||||||||
Sbjct: 1767 aaaccatgaatgtagttctcttcttctaa 1739
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>gb|AC092608.2| Homo sapiens BAC clone RP11-154F14 from 4, complete sequence
          Length = 196952

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 108   aaacaatgtatgtagttctcttcttctaa 136
             |||| ||| ||||||||||||||||||||
Sbjct: 66712 aaaccatgaatgtagttctcttcttctaa 66740
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>emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence
          Length = 168910

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 158    ttcttactaagttttcatata 178
              |||||||||||||||||||||
Sbjct: 141218 ttcttactaagttttcatata 141198
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>dbj|AP004932.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT10J03, TM0094a,
             complete sequence
          Length = 65557

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 298   tcctcctcgtcggattcaacgtctccatactgccaca 334
             |||||||| || || ||||| ||||||||||||||||
Sbjct: 19672 tcctcctcatctgactcaacatctccatactgccaca 19708
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>emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chromosome X, complete
              sequence
          Length = 195413

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     gtccacaaaggacacagacct 90
              |||||||||||||||||||||
Sbjct: 152418 gtccacaaaggacacagacct 152438
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>gb|AC159227.3| Mus musculus BAC clone RP24-334D12 from chromosome 12, complete
             sequence
          Length = 211971

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 104   ggaaaaacaatgtatgtagttctc 127
             ||||| ||||||||||||||||||
Sbjct: 54105 ggaaatacaatgtatgtagttctc 54128
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>gb|BC061968.1| Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide,
           mRNA (cDNA clone MGC:72546 IMAGE:5598014), complete cds
          Length = 3700

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 342 cctttccttcttcgccttct 361
           ||||||||||||||||||||
Sbjct: 338 cctttccttcttcgccttct 319
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>emb|CR707955.2|CNS0G97J Tetraodon nigroviridis full-length cDNA
          Length = 791

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 297 ctcctcctcgtcggattcaacgtc 320
           ||||||||||||||||||| ||||
Sbjct: 574 ctcctcctcgtcggattcatcgtc 551
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>emb|BX323825.19| Zebrafish DNA sequence from clone DKEYP-51B2 in linkage group 5, complete
              sequence
          Length = 185915

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    ataaatatagtctctctttc 160
              ||||||||||||||||||||
Sbjct: 181778 ataaatatagtctctctttc 181797
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>emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE
          Length = 123977

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 351   cttcgccttctcctggaactgttccaggttct 382
             |||| |||||||||||||||  ||||||||||
Sbjct: 51074 cttcaccttctcctggaactcctccaggttct 51105
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>emb|X53234.1|RNNKAA1B Rat NKAA1 gene for Na+/K+ -ATPase alpha1 subunit exon 2
          Length = 1813

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  cctttccttcttcgccttct 361
            ||||||||||||||||||||
Sbjct: 1771 cctttccttcttcgccttct 1752
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>ref|NM_012504.1| Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide
           (Atp1a1), mRNA
          Length = 3636

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 342 cctttccttcttcgccttct 361
           ||||||||||||||||||||
Sbjct: 327 cctttccttcttcgccttct 308
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>emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in linkage group 5,
             complete sequence
          Length = 160041

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   ataaatatagtctctctttc 160
             ||||||||||||||||||||
Sbjct: 88307 ataaatatagtctctctttc 88326
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>gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, complete sequence
          Length = 111857

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   tcttctaatggcataaatat 148
             ||||||||||||||||||||
Sbjct: 84384 tcttctaatggcataaatat 84403
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>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence
          Length = 149462

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   ccaaaactttcatatctaaa 225
             ||||||||||||||||||||
Sbjct: 29599 ccaaaactttcatatctaaa 29580
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>gb|AC112484.8| Homo sapiens 3 BAC RP11-723O4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 185470

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   gtgtccaaaactttcatatc 221
             ||||||||||||||||||||
Sbjct: 41312 gtgtccaaaactttcatatc 41293
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>emb|BX908726.21| Zebrafish DNA sequence from clone DKEY-74I2 in linkage group 22,
             complete sequence
          Length = 180599

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   gagctgtcttcctctccttt 405
             ||||||||||||||||||||
Sbjct: 92306 gagctgtcttcctctccttt 92287
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>emb|X05882.1|RNATPAR Rat mRNA for sodium/potassium-transporting ATPase alpha-1 chain
           precursor (atp1a1 gene)
          Length = 3407

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 342 cctttccttcttcgccttct 361
           ||||||||||||||||||||
Sbjct: 104 cctttccttcttcgccttct 85
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>dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-99C10, complete
              sequences
          Length = 175110

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    aaactttcatatctaaacca 228
              ||||||||||||||||||||
Sbjct: 139050 aaactttcatatctaaacca 139031
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>dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-752D5, complete
             sequences
          Length = 170973

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   aaactttcatatctaaacca 228
             ||||||||||||||||||||
Sbjct: 31136 aaactttcatatctaaacca 31117
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>gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, complete sequence
          Length = 182415

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   tttccttcttcgccttctcc 363
             ||||||||||||||||||||
Sbjct: 98222 tttccttcttcgccttctcc 98203
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>gb|M28647.1|RATNALPH1 Rattus norvegicus Na,K-ATPase alpha-1 subunit mRNA, complete cds
          Length = 3599

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 342 cctttccttcttcgccttct 361
           ||||||||||||||||||||
Sbjct: 350 cctttccttcttcgccttct 331
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>gb|M14511.1|RATATPA1 Rat Na+,K+-ATPase alpha isoform catalytic subunit mRNA, complete
           cds
          Length = 3636

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 342 cctttccttcttcgccttct 361
           ||||||||||||||||||||
Sbjct: 327 cctttccttcttcgccttct 308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,656,147
Number of Sequences: 3902068
Number of extensions: 4656147
Number of successful extensions: 85031
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84915
Number of HSP's gapped (non-prelim): 116
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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