ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl42e02 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) Length = 1095 Score = 102 bits (254), Expect = 4e-22 Identities = 47/59 (79%), Positives = 57/59 (96%) Frame = -2 Query: 437 QWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 QWRSF+N+KKT +A+NFLDGDLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1037 QWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1095
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) (High pigmentation protein 1) Length = 1090 Score = 102 bits (254), Expect = 4e-22 Identities = 47/59 (79%), Positives = 57/59 (96%) Frame = -2 Query: 437 QWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 QWRSF+N+KKT +A+NFLDGDLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1032 QWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1090
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 99.0 bits (245), Expect = 5e-21 Identities = 46/59 (77%), Positives = 56/59 (94%) Frame = -2 Query: 437 QWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 QWRSF+N+K+T+EARNFLDGDLIESFLDL+R+KME+++K+M V VEEL KRVEELTRLH Sbjct: 1030 QWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 94.7 bits (234), Expect = 9e-20 Identities = 44/59 (74%), Positives = 53/59 (89%) Frame = -2 Query: 437 QWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 QWRSF+N+K+T+EA+ +LDGDLIESFLDL+R KMEE++K M V VEEL KRVEELTRLH Sbjct: 1030 QWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKRVEELTRLH 1088
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 65.9 bits (159), Expect = 4e-11 Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 10/68 (14%) Frame = -2 Query: 434 WRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM----------AVPVEELSKR 285 WRSFH ++KT A F+DGDLIESFLD++R KM+EV + ++L K Sbjct: 1073 WRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKV 1132 Query: 284 VEELTRLH 261 VEELTR+H Sbjct: 1133 VEELTRIH 1140
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 65.9 bits (159), Expect = 4e-11 Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 10/68 (14%) Frame = -2 Query: 434 WRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM----------AVPVEELSKR 285 WRSFH ++KT A F+DGDLIESFLD++R KM+EV + ++L K Sbjct: 1073 WRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKV 1132 Query: 284 VEELTRLH 261 VEELTR+H Sbjct: 1133 VEELTRIH 1140
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 36.2 bits (82), Expect = 0.036 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%) Frame = -2 Query: 437 QWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKA------MAVPVEELSKRVEE 276 +W+ + + +TS + + +DG LIES L L + E+ + + V++L +E Sbjct: 1008 EWKEYRGENETSPS-DLIDGSLIESILGLREPILNEIVNGGHEGTKLDISVQDLKSIIEN 1066 Query: 275 LTRLH 261 L +LH Sbjct: 1067 LEKLH 1071
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 33.9 bits (76), Expect = 0.18 Identities = 17/55 (30%), Positives = 31/55 (56%) Frame = -2 Query: 437 QWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 273 ++RS++N K N +DGDLIE F +L++S + + E+ K++ E+ Sbjct: 1201 KFRSYYNPVK-----NVMDGDLIERFYELSQSMKIRIGTELNRTPREIEKKISEM 1250
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 33.1 bits (74), Expect = 0.31 Identities = 17/53 (32%), Positives = 32/53 (60%) Frame = -2 Query: 431 RSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 273 RS++N K N +DGDL+E FL+ + S E+++ + V ++ K++ +L Sbjct: 1166 RSYYNPIK-----NVIDGDLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDL 1213
>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF) Length = 1455 Score = 33.1 bits (74), Expect = 0.31 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Frame = -2 Query: 437 QWRSFHNDKKT--SEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRL 264 ++R+ + KK + +R +DGDLI S+ + S+ EVAK + EE+ + E+ RL Sbjct: 1392 EYRTLKSSKKQGINPSRCIIDGDLIWSYRLMANSERNEVAKKIGTRTEEILGDLLEIERL 1451
>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi| transport factor 1) (Spliceosome-associated protein 130) Length = 1361 Score = 32.3 bits (72), Expect = 0.52 Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%) Frame = -2 Query: 437 QWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM-AVPVEELSKRVEEL 273 ++RS++ + R +DGDL E+FL L+ ++ E +AK + +V VE++ + + E+ Sbjct: 1306 EYRSYY-----APVRKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEV 1356
>IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma)| Length = 170 Score = 32.0 bits (71), Expect = 0.68 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = -2 Query: 413 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEEL 273 K E+ N + DLI +F + +R KM++ K +PV +L K V EL Sbjct: 84 KTIQESINTIRADLIVNFFNNSREKMDDFIKLTTIPVNDLQVQRKAVNEL 133
>IFNG_MOSBE (Q647G2) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 32.0 bits (71), Expect = 0.68 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Frame = -2 Query: 434 WRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 264 + +F +D+ + + + D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 80 FENFKDDQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>ALF_TRYBB (P07752) Fructose-bisphosphate aldolase, glycosomal (EC 4.1.2.13)| Length = 371 Score = 29.6 bits (65), Expect = 3.4 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = +3 Query: 105 QHR*SYTLIKVENRETECCYKHLQGIILRPPTVYNTAKTNK*NRMYTARRYLV 263 +HR Y + +E E +++ G+IL TVY AKT + Y RR +V Sbjct: 63 EHRRQYRALMLECEGFE---QYISGVILHDETVYQKAKTGETFPQYLRRRGVV 112
>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1282 Score = 29.6 bits (65), Expect = 3.4 Identities = 29/91 (31%), Positives = 41/91 (45%) Frame = -2 Query: 419 NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 240 N KKT E N D +E LN KM V K+ E+ R L R H + RV Sbjct: 1160 NSKKTME--NVESLDKLECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1211 Query: 239 HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 147 L RF+ V++W E+ P ++ T ++ Sbjct: 1212 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1242
>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1273 Score = 29.6 bits (65), Expect = 3.4 Identities = 29/91 (31%), Positives = 42/91 (46%) Frame = -2 Query: 419 NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 240 N KKT E + LD +E LN KM V K+ E+ R L R H + RV Sbjct: 1151 NSKKTMENVDSLDK--LECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1202 Query: 239 HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 147 L RF+ V++W E+ P ++ T ++ Sbjct: 1203 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1233
>APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein L-IV)| (ApoL-IV) Length = 351 Score = 29.3 bits (64), Expect = 4.4 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = -2 Query: 377 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 +L++ LDL++ E A+++ +EL + + ELT +H Sbjct: 307 NLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIH 345
>CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation specificity factor,| 160 kDa subunit (CPSF 160 kDa subunit) Length = 1454 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = -2 Query: 398 ARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRL 264 ARN +DGD++E +L L+ ++A+ + V + + +L R+ Sbjct: 1406 ARNLIDGDVVEQYLHLSLYDKTDLARRLGVGRYHIIDDLMQLRRM 1450
>G168_PARPR (P17053) G surface protein, allelic form 168 precursor| Length = 2704 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +1 Query: 160 ATNTCRGSFSGRQRFTTQRKRTNKTGCTRHGAT*C 264 A TC + G +++ K GCT +GAT C Sbjct: 1637 AATTCDAVYLGTGNYSSANCNEMKAGCTNNGATAC 1671
>GATB_WOLSU (Q7M7Y2) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 472 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = -2 Query: 431 RSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEE 276 RS +++++ R F D DL+ F+D + MEE K +P E+ ++ V + Sbjct: 258 RSMRGKEESADYRYFPDPDLLPVFID--ATLMEEAEKIPELPDEKRARLVRD 307
>RSE1_ASHGO (Q753D4) Pre-mRNA-splicing factor RSE1| Length = 1288 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Frame = -2 Query: 434 WRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEV-AKAMAVPVEELSKRVEEL 273 +RS++N R+ DGDL E FL+L S+ + A+ V+E+ +R+ ++ Sbjct: 1234 YRSYYNP-----VRHVTDGDLCEQFLELYPSEKNFLAARVDNRSVQEIERRINDM 1283
>MODA_MYCTU (P0A5Y0) Molybdate-binding protein precursor| Length = 261 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 371 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 I SF DL R + V +VP ++R+E+ T +H Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169
>MODA_MYCBO (P0A5Y1) Molybdate-binding protein precursor| Length = 261 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 371 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 I SF DL R + V +VP ++R+E+ T +H Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169
>TRX_DROVI (Q24742) Protein trithorax| Length = 3828 Score = 28.1 bits (61), Expect = 9.9 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +1 Query: 46 VMFDNALLINNGDSPLK-FYISTDKVTLLSKSKTEKRNVATNTCRGS 183 V F N L ++ S +K FY ++V L+S K + N N CRGS Sbjct: 394 VTFKNILETSDDKSVVKRFYNPDNRVPLVSIMKKDSLNRPLNYCRGS 440 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,754,844 Number of Sequences: 219361 Number of extensions: 919924 Number of successful extensions: 2992 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2900 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2989 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
