ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl42d08 |
|---|---|
| Clone Library Name | barley_pub |
>RDRP_PMMVS (P29098) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 30.4 bits (67), Expect = 1.1 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = -3 Query: 147 PCWNPFTKDS*AICCLYPV*HVQRVAHCSE 58 PC++ +T D ++ C P H + V+HC++ Sbjct: 165 PCFDKYTDDPQSVVCSKPFQHCEGVSHCTD 194
>RDRP_PMMVJ (P89657) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 30.4 bits (67), Expect = 1.1 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = -3 Query: 147 PCWNPFTKDS*AICCLYPV*HVQRVAHCSE 58 PC++ +T D ++ C P H + V+HC++ Sbjct: 165 PCFDKYTDDPQSVVCSKPFQHCEGVSHCTD 194
>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2330 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%) Frame = -1 Query: 353 YAGTHE---GAELRPEGVPEGRVPSPS 282 + G H+ GAEL P G PEGR PS Sbjct: 26 HLGCHQWVSGAELAPPGTPEGRAAPPS 52
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%) Frame = -1 Query: 353 YAGTHE---GAELRPEGVPEGRVPSPS 282 + G H+ GAEL P G PEGR PS Sbjct: 26 HLGCHQWVSGAELAPPGTPEGRAAPPS 52
>TIG_DESVH (Q72CE9) Trigger factor (TF)| Length = 433 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = -2 Query: 349 LERTRERNFDLKAYLRDAYLHPVFKSNGVDKFY-VADDPGAEEVIVRTKRQPRRITPVQS 173 LER +E ++ + + + P ++ V++ V D+ +EVI R +R + PV Sbjct: 97 LERGKEFSYTISFEVMPQFDLPDYEGFAVEQEKAVVDEKEVDEVIARIRRNMAELVPVAE 156 Query: 172 EHDGSD 155 G+D Sbjct: 157 TRPGAD 162
>KPRS2_LISMO (Q8Y9L8) Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (RPPK 2)| (Phosphoribosyl pyrophosphate synthetase 2) (P-Rib-PP synthetase 2) (PRPP synthetase 2) Length = 311 Score = 28.1 bits (61), Expect = 5.5 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%) Frame = +2 Query: 101 RQHIA*LSFVNGFQHGEAIRAVVLALHRRDPPGLPLCPHDHLLRAGIVGDI-------KL 259 R+ I N Q A R + + LH G P DHL ++GD K Sbjct: 105 REPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKD 164 Query: 260 VYPIALEHWVKVRVPQVRLQVEVPLPRAFQRILPH 364 V +A +H VR ++ ++ P+ ++ PH Sbjct: 165 VVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPH 199
>KPRS2_LISMF (Q723E1) Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (RPPK 2)| (Phosphoribosyl pyrophosphate synthetase 2) (P-Rib-PP synthetase 2) (PRPP synthetase 2) Length = 311 Score = 28.1 bits (61), Expect = 5.5 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%) Frame = +2 Query: 101 RQHIA*LSFVNGFQHGEAIRAVVLALHRRDPPGLPLCPHDHLLRAGIVGDI-------KL 259 R+ I N Q A R + + LH G P DHL ++GD K Sbjct: 105 REPITAKLMANLIQRAGADRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKD 164 Query: 260 VYPIALEHWVKVRVPQVRLQVEVPLPRAFQRILPH 364 V +A +H VR ++ ++ P+ ++ PH Sbjct: 165 VVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPH 199
>KPRS2_LISIN (Q92EF1) Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (RPPK 2)| (Phosphoribosyl pyrophosphate synthetase 2) (P-Rib-PP synthetase 2) (PRPP synthetase 2) Length = 311 Score = 28.1 bits (61), Expect = 5.5 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 7/95 (7%) Frame = +2 Query: 101 RQHIA*LSFVNGFQHGEAIRAVVLALHRRDPPGLPLCPHDHLLRAGIVGDIKL------- 259 R+ I N Q A R + + LH G P DHL ++GD + Sbjct: 105 REPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAVPLIGDYLIEKYGEED 164 Query: 260 VYPIALEHWVKVRVPQVRLQVEVPLPRAFQRILPH 364 V +A +H VR ++ ++ P+ ++ PH Sbjct: 165 VVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPH 199
>PPS3_BACSU (P39847) Peptide synthetase 3| Length = 2555 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Frame = -2 Query: 331 RNFDLKAYLRDAYLHPVFKS------NGVDKFYVADDPGAEEVIVRTKRQPRRITPVQSE 170 + FD++ L+D + HP + G D Y A P ++ +RI +Q Sbjct: 1014 KEFDVQVPLKDVFAHPTVEGLATVIREGTDSPYEAIKPAEKQETYPVSSAQKRIYVLQQL 1073 Query: 169 HDG 161 DG Sbjct: 1074 EDG 1076
>PPS1_BACSU (P39845) Peptide synthetase 1| Length = 2561 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Frame = -2 Query: 331 RNFDLKAYLRDAYLHPVFKS------NGVDKFYVADDPGAEEVIVRTKRQPRRITPVQSE 170 + FD++ L+D + HP + G D Y A P ++ +RI +Q Sbjct: 1008 KEFDVQVPLKDVFAHPTVEGLATVIREGTDSPYEAIKPAEKQETYPVSSAQKRIYVLQQL 1067 Query: 169 HDG 161 DG Sbjct: 1068 EDG 1070
>VGLH_HHV7J (P52353) Glycoprotein H precursor| Length = 690 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +1 Query: 16 LHFTYIIARQIHLILAAMCNSLYMLY 93 L F I R+IH++LA++CN L M + Sbjct: 429 LVFQEKIKRKIHVLLASLCNPLEMYF 454
>CD99_MOUSE (Q8VCN6) CD99 antigen precursor (Paired immunoglobin-like type 2| receptor-ligand) (PILR-L) Length = 175 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = -1 Query: 368 GDEEGYAGTHEGAELRPEGVPEGRVP 291 GDE G+ G GAE PEG P+G VP Sbjct: 118 GDEGGHGGAG-GAE--PEGTPQGLVP 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,430,618 Number of Sequences: 219361 Number of extensions: 898150 Number of successful extensions: 2862 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2779 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2861 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
