ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl42d08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ430119.1| Sorghum propinquum locus pSB1757 genomic sequence Length = 702 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430118.1| Sorghum bicolor voucher PI585454 locus pSB1757 genomic sequence Length = 700 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430117.1| Sorghum bicolor voucher PI267539 locus pSB1757 genomic sequence Length = 700 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430116.1| Sorghum bicolor voucher PI267408 locus pSB1757 genomic sequence Length = 701 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430115.1| Sorghum bicolor voucher PI152702 locus pSB1757 genomic sequence Length = 701 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430114.1| Sorghum bicolor voucher NSL92371 locus pSB1757 genomic sequence Length = 701 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430113.1| Sorghum bicolor voucher NSL87902 locus pSB1757 genomic sequence Length = 700 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430112.1| Sorghum bicolor voucher NSL87666 locus pSB1757 genomic sequence Length = 701 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430111.1| Sorghum bicolor voucher NSL77217 locus pSB1757 genomic sequence Length = 701 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430110.1| Sorghum bicolor voucher NSL77034 locus pSB1757 genomic sequence Length = 701 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430109.1| Sorghum bicolor voucher NSL56174 locus pSB1757 genomic sequence Length = 701 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430108.1| Sorghum bicolor voucher NSL56003 locus pSB1757 genomic sequence Length = 701 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430107.1| Sorghum bicolor voucher NSL55243 locus pSB1757 genomic sequence Length = 701 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430106.1| Sorghum bicolor voucher NSL51365 locus pSB1757 genomic sequence Length = 701 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430105.1| Sorghum bicolor voucher NSL51030 locus pSB1757 genomic sequence Length = 700 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430104.1| Sorghum bicolor voucher NSL50875 locus pSB1757 genomic sequence Length = 700 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|DQ430103.1| Sorghum bicolor voucher BTx623 locus pSB1757 genomic sequence Length = 701 Score = 46.1 bits (23), Expect = 0.079 Identities = 74/91 (81%) Strand = Plus / Minus Query: 275 cttgaacactgggtgaaggtacgcgtccctcaggtacgccttcaggtcgaagttccgctc 334 ||||||||| ||||| ||||||| || ||||||||||||||| |||||||| |||| Sbjct: 127 cttgaacaccgggtgcaggtacgagttggccaggtacgccttcagatcgaagttgggctc 68 Query: 335 cctcgtgcgttccagcgtatccttcctcatc 365 || | |||||||| || |||||| ||||| Sbjct: 67 ccgggcacgttccagggtgtccttcttcatc 37
>gb|AY108543.1| Zea mays PCO120949 mRNA sequence Length = 544 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Minus Query: 201 tgccgctttgtccgcacgatcacctcctcc 230 |||||||| ||| ||||||||||||||||| Sbjct: 330 tgccgcttcgtcggcacgatcacctcctcc 301
>gb|AY534122.1|SEG_AY534122S1 Aegilops tauschii transposon XJ, complete sequence; putative Bowman Birk trypsin inhibitor gene, complete cds; Stowaway MITE, complete sequence; and insertion sequences xl_tt1a and xl_tt1b putative ripening related protein genes, complete cds Length = 26073 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 gtgaacggattccagcacggagagg 152 ||||||||||||||||| ||||||| Sbjct: 24475 gtgaacggattccagcaaggagagg 24499
>emb|AL354715.10| Human DNA sequence from clone RP11-110G12 on chromosome 13, complete sequence Length = 121019 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 31 ataattgcaagacaaatacacttaa 55 |||||||||||||| |||||||||| Sbjct: 15058 ataattgcaagacatatacacttaa 15082
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 ccgcgccgggatcgtcggcga 249 ||||||||||||||||||||| Sbjct: 1999020 ccgcgccgggatcgtcggcga 1999040 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ccgcgccgggatcgtcggcg 248 |||||||||||||||||||| Sbjct: 614039 ccgcgccgggatcgtcggcg 614020
>gb|AF196969.3| Homo sapiens chromosome X clone LL0XNC01-30I04 map p11.23, complete sequence Length = 40403 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 6653 acggattccagcacggagag 6672
>gb|AF196972.1| Homo sapiens chromosome X multiple clones map p11.23, complete sequence Length = 122568 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 121645 acggattccagcacggagag 121664
>gb|BC001549.1| Homo sapiens emopamil binding protein (sterol isomerase), mRNA (cDNA clone MGC:5010 IMAGE:3463689), complete cds Length = 1121 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 650 acggattccagcacggagag 669
>gb|BC001572.1| Homo sapiens emopamil binding protein (sterol isomerase), mRNA (cDNA clone MGC:5506 IMAGE:3453423), complete cds Length = 1116 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 652 acggattccagcacggagag 671
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgtgctcgctctgcaccggc 185 |||||||||||||||||||| Sbjct: 3019644 cgtgctcgctctgcaccggc 3019625
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgtgctcgctctgcaccggc 185 |||||||||||||||||||| Sbjct: 2841788 cgtgctcgctctgcaccggc 2841769
>gb|BC046501.1| Homo sapiens emopamil binding protein (sterol isomerase), mRNA (cDNA clone MGC:29952 IMAGE:5106272), complete cds Length = 1153 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 694 acggattccagcacggagag 713
>emb|AL355358.9| Human DNA sequence from clone RP11-536L15 on chromosome 6 Contains a ribosomal protein S29 (RPS29) pseudogene, complete sequence Length = 141825 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 aattgcaagacaaatacact 52 |||||||||||||||||||| Sbjct: 108929 aattgcaagacaaatacact 108910
>emb|CR619002.1| full-length cDNA clone CS0DJ012YF12 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1076 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 653 acggattccagcacggagag 672
>emb|CR616138.1| full-length cDNA clone CS0DC006YG06 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 897 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 462 acggattccagcacggagag 481
>emb|CR615017.1| full-length cDNA clone CS0DM014YJ23 of Fetal liver of Homo sapiens (human) Length = 1026 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 589 acggattccagcacggagag 608
>emb|CR609847.1| full-length cDNA clone CS0DC004YJ24 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1039 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 627 acggattccagcacggagag 646
>emb|CR603434.1| full-length cDNA clone CS0DI076YN04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 472 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 44 acggattccagcacggagag 63
>emb|CR601932.1| full-length cDNA clone CS0DL012YC20 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1050 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 628 acggattccagcacggagag 647
>emb|CR542094.1| Homo sapiens full open reading frame cDNA clone RZPDo834A0737D for gene EBP, emopamil binding protein (sterol isomerase); complete cds, without stopcodon Length = 690 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 515 acggattccagcacggagag 534
>emb|CR456815.1| Homo sapiens full open reading frame cDNA clone RZPDo834C1215D for gene EBP, emopamil binding protein (sterol isomerase); complete cds, incl. stopcodon Length = 693 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 515 acggattccagcacggagag 534
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ccgcgccgggatcgtcggcg 248 |||||||||||||||||||| Sbjct: 6983692 ccgcgccgggatcgtcggcg 6983673
>gb|AY894035.1| Synthetic construct Homo sapiens clone FLH131181.01L emopamil binding protein (EBP) mRNA, partial cds Length = 693 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 515 acggattccagcacggagag 534
>ref|NM_006579.1| Homo sapiens emopamil binding protein (sterol isomerase) (EBP), mRNA Length = 1073 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 626 acggattccagcacggagag 645
>emb|Z37986.1|HSPHBIPRM H.sapiens mRNA for phenylalkylamine binding protein Length = 1073 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggattccagcacggagag 151 |||||||||||||||||||| Sbjct: 626 acggattccagcacggagag 645 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,076,503 Number of Sequences: 3902068 Number of extensions: 2076503 Number of successful extensions: 35276 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35113 Number of HSP's gapped (non-prelim): 163 length of query: 368 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 346 effective length of database: 17,147,199,772 effective search space: 5932931121112 effective search space used: 5932931121112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
