ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia p... 39 0.005
2MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p... 39 0.005
3MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia p... 31 1.3
4ZNHI2_HUMAN (Q9UHR6) Zinc finger HIT domain-containing protein 2... 30 3.8
5ZNHI2_MOUSE (Q9QY66) Zinc finger HIT domain-containing protein 2... 29 4.9
6MT2_CALSI (P55950) Metallothionein-2B (MT-2B) (Metallothionein-I... 29 6.4
7PXDC2_XENLA (Q6DE92) Plexin domain-containing protein 2 precursor 29 6.4
8POU1_BRARE (P31366) POU domain protein 1 (ZFPOU1) 28 8.4
9POU23_BRARE (P79745) POU domain protein ZP-23 28 8.4
10TRGS_TACTR (P81281) 8.6 kDa transglutaminase substrate 28 8.4
11KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-ass... 28 8.4

>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 419  CEDPPWDSIPDRAYCCRWCSWCKVCSEDS 333
            C DPP  ++P   + C+WC WC+ C   S
Sbjct: 1029 CLDPPLQTVPKGGWKCKWCVWCRHCGATS 1057



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>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 419  CEDPPWDSIPDRAYCCRWCSWCKVCSEDS 333
            C DPP  ++P   + C+WC WC+ C   S
Sbjct: 1036 CLDPPLQTVPKGGWKCKWCVWCRHCGATS 1064



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>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 419  CEDPPWDSIPDRAYCCRWCSWCKVCSEDS 333
            C DPP  ++P   + C+WC  C  C   S
Sbjct: 1181 CLDPPLLTVPKGGWKCKWCVSCMQCGAAS 1209



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>ZNHI2_HUMAN (Q9UHR6) Zinc finger HIT domain-containing protein 2 (Protein FON)|
          Length = 403

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 319 VPLFFEAMESLIK*-VTGNLRMDIPSKLFSYEHTAVLFHG 203
           VP    A+ SL +  V+  +R  +P+ LF+Y HT  L+HG
Sbjct: 192 VPTRIPAIVSLSRGPVSPLVRFQLPNVLFAYAHTLALYHG 231



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>ZNHI2_MOUSE (Q9QY66) Zinc finger HIT domain-containing protein 2 (Protein FON)|
          Length = 399

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 265 LRMDIPSKLFSYEHTAVLFHG 203
           +R  +P+ LF+Y HT  L+HG
Sbjct: 206 VRFQLPNVLFAYAHTLALYHG 226



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>MT2_CALSI (P55950) Metallothionein-2B (MT-2B) (Metallothionein-IIB) (MT-IIB)|
           [Contains: Metallothionein-2A (MT-2A)
           (Metallothionein-IIA) (MT-IIA)]
          Length = 58

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -3

Query: 455 EEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSE 339
           E +CK GC    C  PP D       C       K CS+
Sbjct: 14  EGECKTGCKCKSCRCPPCDKCSSECKCTSKEECSKTCSK 52



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>PXDC2_XENLA (Q6DE92) Plexin domain-containing protein 2 precursor|
          Length = 513

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 19/51 (37%)
 Frame = -3

Query: 365 CSWCKV-------------------CSEDSKQGVCASIL*SYGVSYQVSDG 270
           CSWC +                   C+E+SK  VC  +L + G+S+  + G
Sbjct: 331 CSWCNIPQRCSSGFDRHRQDWVENGCTEESKDTVCDDLLQTTGISHHTTTG 381



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>POU1_BRARE (P31366) POU domain protein 1 (ZFPOU1)|
          Length = 425

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = +1

Query: 259 SLSYPSLT**ETP*LQRIEAQTPCLESSLHTLHQEHQRQQ*ALSGMESHGGSSQTDT 429
           SL +P L   +TP L           S  H  H +HQ  Q A  G+ SH   S  DT
Sbjct: 192 SLVHPGLVRGDTPELDH--------SSHHHHHHHQHQHHQQAHHGVNSHDPHSDEDT 240



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>POU23_BRARE (P79745) POU domain protein ZP-23|
          Length = 443

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = +1

Query: 259 SLSYPSLT**ETP*LQRIEAQTPCLESSLHTLHQEHQRQQ*ALSGMESHGGSSQTDT 429
           SL +P L   +TP L           S  H  H +HQ  Q A  G+ SH   S  DT
Sbjct: 192 SLVHPGLVRGDTPELDH--------SSHHHHHHHQHQHHQQAHHGVNSHDPHSDEDT 240



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>TRGS_TACTR (P81281) 8.6 kDa transglutaminase substrate|
          Length = 81

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 446 CKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCS 342
           C  GC  S C D    +    A  C+ C +C  C+
Sbjct: 6   CSVGCDTSYCPDTSSCNCGTFADYCKCCQYCNACA 40



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>KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-associated protein|
           5.8) (Ultrahigh sulfur keratin-associated protein 5.8)
           (Keratin, ultra high-sulfur matrix protein B) (UHS
           keratin B) (UHS KerB)
          Length = 187

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/43 (27%), Positives = 16/43 (37%)
 Frame = -3

Query: 446 CKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDSKQGVC 318
           C  GC  S C+         ++ CC+ CS    C     Q  C
Sbjct: 96  CSSGCGSSCCQSSCCKPCCSQSSCCKPCSCSSGCGSSCCQSSC 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,854,875
Number of Sequences: 219361
Number of extensions: 1257920
Number of successful extensions: 3633
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3627
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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