ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TENS1_HUMAN (Q9HBL0) Tensin-1 30 2.3
2PC_DROME (P26017) Polycomb group protein Pc (Protein polycomb) 29 5.2
3SPEN_DROME (Q8SX83) Protein split ends 29 5.2
4TGA7_ARATH (Q93ZE2) Transcription factor TGA7 (AtbZIP50) 29 6.8
5SPR1_SACBA (Q876J2) Sporulation-specific glucan 1,3-beta-glucosi... 29 6.8
6INSR_HUMAN (P06213) Insulin receptor precursor (EC 2.7.10.1) (IR... 28 8.9
7HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (E... 28 8.9
8SPR1_YEAST (P32603) Sporulation-specific glucan 1,3-beta-glucosi... 28 8.9
9CHAC_ECOLI (P39163) Cation transport protein chaC 28 8.9

>TENS1_HUMAN (Q9HBL0) Tensin-1|
          Length = 1735

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 167  LIHHKMQ-PEASFFHSSVISSLDSNLATTYDAPNAMNLP 280
            L HH+M  P  + FH S +SS  S+ ATT  +P+    P
Sbjct: 1212 LSHHQMMGPPGTGFHGSTVSSPQSSAATTPGSPSLCRHP 1250



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>PC_DROME (P26017) Polycomb group protein Pc (Protein polycomb)|
          Length = 390

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 137 HASHKITFRVLIHHKMQPEASFFHSSVISSLDSNLATTYDAP 262
           H  H  + R  I H     +SF H+S +   DSN +++ D P
Sbjct: 163 HHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSNSSSSEDQP 204



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>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +2

Query: 185 QPEASFFHSSVISSLDSNLATTYDAPNAMNLPVNCKGSSSPSASCFAFLVETYGSS 352
           +P  + F  +      S L T Y A N+ +L  +    SS SAS   F     GSS
Sbjct: 64  EPPTNSFERNYYDRTTSRLVTQYQANNSTSLANSNSSPSSVSASASVFATAAGGSS 119



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>TGA7_ARATH (Q93ZE2) Transcription factor TGA7 (AtbZIP50)|
          Length = 368

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 219 FLHWTATLRPHTMLQML*TYLSIVKARQVLQLRALLSSSR 338
           F  W    RP  +L ++  YL  +  +Q+L++R L  SS+
Sbjct: 227 FFQWIGGFRPSELLNVVMPYLQPLTDQQILEVRNLQQSSQ 266



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>SPR1_SACBA (Q876J2) Sporulation-specific glucan 1,3-beta-glucosidase precursor|
           (EC 3.2.1.58) (Exo-1,3-beta-glucanase)
          Length = 445

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 324 AKHEAEGL--DEPLQLTGKFIAFGASYVVARLLSSEEMTLEWKKEASGCILWCMRTLNVI 151
           A +E  GL  +E  Q T KFI           L + EMT  W       I+WC +T N I
Sbjct: 374 ANNENVGLWSEERKQNTRKFIE--------AQLDAFEMTGGW-------IMWCYKTENSI 418

Query: 150 LWDA*NVVQ 124
            WD   ++Q
Sbjct: 419 EWDVEKLIQ 427



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>INSR_HUMAN (P06213) Insulin receptor precursor (EC 2.7.10.1) (IR) (CD220|
           antigen) [Contains: Insulin receptor alpha subunit;
           Insulin receptor beta subunit]
          Length = 1382

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +1

Query: 61  FNYIQD--HSKRTSIQMNCPQLVLDNISCIPQNNIQSSHTPQNATRSFLL---PF*CHFF 225
           F++ QD  H  + S +  C Q V+ N  CIP+     +    N   +  L   P  CH  
Sbjct: 283 FSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLL 342

Query: 226 TGQQPCDHI 252
            G++  D +
Sbjct: 343 EGEKTIDSV 351



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>HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (EC 3.6.1.-)|
          Length = 1942

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 40   PGQSVA*FNYIQDHSKRTSIQMNCPQLVLDNISCIPQNNIQ---SSHTPQ 180
            P  S+A    +QDHS ++S   + P+  ++  S  P  NI    SS T Q
Sbjct: 1777 PQDSLAQCKELQDHSNQSSFNFSSPESWVNTTSSTPYQNIPCNGSSRTAQ 1826



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>SPR1_YEAST (P32603) Sporulation-specific glucan 1,3-beta-glucosidase precursor|
           (EC 3.2.1.58) (Exo-1,3-beta-glucanase)
          Length = 445

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 222 EMTLEWKKEASGCILWCMRTLNVILWDA*NVVQ 124
           E  L+  +   G I+WC +T N I WD   ++Q
Sbjct: 395 EAQLDAFEMTGGWIMWCYKTENSIEWDVEKLIQ 427



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>CHAC_ECOLI (P39163) Cation transport protein chaC|
          Length = 231

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
 Frame = -3

Query: 261 GASYVVARLLSSEEMTLEWKKE-ASGCIL--WCM------RTLNVILW 145
           G +Y +      +E+TL WK+E  +GC L  WC       RT+N I++
Sbjct: 106 GVAYRLPEETLEQELTLLWKREMITGCYLPTWCQLDLDDGRTVNAIVF 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,349,882
Number of Sequences: 219361
Number of extensions: 1211085
Number of successful extensions: 3409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3408
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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