>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3|
           precursor (LTBP-3)
          Length = 1268

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 227 HDNYGSRSNTGHEDCAALSSLEPFPFALTIWLFLELYRSYRCHCTR 364
           H N G RS+  H  C  ++  E  P      + +    SY CHC R
Sbjct: 596 HCNAGYRSHPQHRYCVDVNECEAEPCGPGKGICMNTGGSYNCHCNR 641

>LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-binding protein 3|
           precursor (LTBP-3)
          Length = 1302

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 227 HDNYGSRSNTGHEDCAALSSLEPFPFALTIWLFLELYRSYRCHCTR 364
           H N G RS+  H  C  ++  E  P      + +    SY CHC R
Sbjct: 599 HCNPGYRSHPQHRYCVDVNECEAEPCGPGRGICMNTGGSYNCHCNR 644

>POLN_FCVC6 (P27407) Non-structural polyprotein [Contains: p5.6; p32; Helicase|
           (2C-like protein) (p39); 3A-like protein (p30); Viral
           genome-linked protein (VPg) (p13); Thiol protease P3C
           (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed
           RNA polymera
          Length = 1762

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -1

Query: 248 NVTHNC-----RVGQEAWRLTAFPALHHVVRINVCFFFSFCLRRFKSL 120
           ++TH C     ++  ++ RL   PA  HVV +N  F  ++ LRR  +L
Sbjct: 779 DLTHLCHFIKGKIVNDSVRLDELPANQHVVTVNSVFDLAWALRRHSTL 826

>SDC4_RAT (P34901) Syndecan-4 precursor (SYND4) (Ryudocan core protein)|
          Length = 202

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 307 LDYLAVPRALPKLQMPLHTLTNHLPEN 387
           LD    PR  P++  PL  L NH+PEN
Sbjct: 70  LDDTEEPRTFPEVISPLVPLDNHIPEN 96

>POLN_FCVUR (Q66914) Non-structural polyprotein [Contains: p5.6; p32; Helicase|
           (2C-like protein) (p39); 3A-like protein (p30); Viral
           genome-linked protein (VPg) (p13); Thiol protease P3C
           (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed
           RNA polymera
          Length = 1763

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -1

Query: 248 NVTHNC-----RVGQEAWRLTAFPALHHVVRINVCFFFSFCLRRFKSL 120
           ++TH C     ++  ++ RL   PA  HVV +N  F  ++ LRR  +L
Sbjct: 780 DLTHLCHFIRGKIVNDSVRLDELPANQHVVTVNSVFDLAWALRRHLTL 827

>L_EBOSM (Q66802) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2210

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 132  PSEAKGKKKANINTYNMMKSGEGRKPPGLLSNTTIMGHVPTRDMKIVQ 275
            P +  G  KA    + ++  G   +PPGL  N +    +PTR  +IVQ
Sbjct: 1648 PKKTIGATKATTAPHIILPLGNSDRPPGLDLNQSNDTFIPTRIKQIVQ 1695

>YDN1_SCHPO (P87293) Hypothetical protein C16A10.01 in chromosome I|
          Length = 830

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +3

Query: 120 KTFEPSEAKGKKKANINTYNMMKSGEGRKPPGLLSNTTIMGHVPTRDMKIVQ 275
           ++F  +        N  TYN++       P   +S  T M H P+   K++Q
Sbjct: 218 QSFNSASRSSSISGNQYTYNLLGKSTDESPKITISAGTSMSHFPSASSKLIQ 269

>SDC4_MOUSE (O35988) Syndecan-4 precursor (SYND4) (Ryudocan core protein)|
          Length = 198

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 307 LDYLAVPRALPKLQMPLHTLTNHLPEN 387
           LD    PR  P++  PL  L NH+PEN
Sbjct: 67  LDDTEEPRPFPEVIEPLVPLDNHIPEN 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,800,616
Number of Sequences: 219361
Number of extensions: 1230080
Number of successful extensions: 2644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2644
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)