ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TFP11_HUMAN (Q9UBB9) Tuftelin-interacting protein 11 47 3e-05
2TFP11_MOUSE (Q9ERA6) Tuftelin-interacting protein 11 (Tuftelin-i... 47 3e-05
3HEATR_DROME (Q9VM75) Hypothetical protein CG10805 29 5.7
4ICA69_RAT (Q63054) Islet cell autoantigen 1 (69 kDa islet cell a... 29 5.7
5O10Q1_HUMAN (Q8NGQ4) Olfactory receptor 10Q1 28 9.7

>TFP11_HUMAN (Q9UBB9) Tuftelin-interacting protein 11|
          Length = 837

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 25/75 (33%), Positives = 44/75 (58%)
 Frame = -1

Query: 426 AAMSEMSFKESIQAYAGDQGLLFMPRVNKFYKGMQVYEFGTVSICIDSVKRLLYAQLQEG 247
           A+   M+FK+ I+  A +  ++FMP + K ++G Q+Y FG + I ID  + +++ Q   G
Sbjct: 766 ASSVPMNFKDLIETKAEEHNIVFMPVIGKRHEGKQLYTFGRIVIYID--RGVVFVQ---G 820

Query: 246 AERWSSVSLTQLLEM 202
            + W   SL  L++M
Sbjct: 821 EKTWVPTSLQSLIDM 835



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>TFP11_MOUSE (Q9ERA6) Tuftelin-interacting protein 11 (Tuftelin-interacting|
           protein 39)
          Length = 838

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 25/75 (33%), Positives = 44/75 (58%)
 Frame = -1

Query: 426 AAMSEMSFKESIQAYAGDQGLLFMPRVNKFYKGMQVYEFGTVSICIDSVKRLLYAQLQEG 247
           A+   M+FK+ I+  A +  ++FMP + K ++G Q+Y FG + I ID  + +++ Q   G
Sbjct: 767 ASSVPMNFKDLIETKAEEHNIVFMPVIGKRHEGKQLYTFGRIVIYID--RGVVFVQ---G 821

Query: 246 AERWSSVSLTQLLEM 202
            + W   SL  L++M
Sbjct: 822 EKTWVPTSLQSLIDM 836



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>HEATR_DROME (Q9VM75) Hypothetical protein CG10805|
          Length = 2096

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -2

Query: 161  WKFHVIIFVSNVVELLIKNKVSDDVSECDFPHFNMELGFYCPTM 30
            W+F  IIF S V+   +  KVS D S  DF    + L F  PT+
Sbjct: 1364 WQFLCIIFESQVLLEQVPQKVSTDKSRLDFAR-ELTLMFEDPTV 1406



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>ICA69_RAT (Q63054) Islet cell autoantigen 1 (69 kDa islet cell autoantigen)|
           (ICA69) (p69) (Islet cell autoantigen p69) (ICAp69)
          Length = 480

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -1

Query: 357 MPRVNKFYKGMQVYEFGTVSICIDSVKRLLYAQLQEGAERWSSVSLTQ 214
           M  +++ +KG Q YEF T+    D +K+L+  + ++ + R +  ++ Q
Sbjct: 248 MAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEKKKSSRRENREAVAQ 295



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>O10Q1_HUMAN (Q8NGQ4) Olfactory receptor 10Q1|
          Length = 319

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +1

Query: 31  IVGQ*KPSSMLKCGKSHSDTSSETLFFISNSTT---LLTKMIT*NFQVIYDLLMGSCHPV 201
           I+G  KP S+  CG       ++  FF++  +T   LL  M        YD  +  CHP+
Sbjct: 89  ILGAQKPISLAGCG-------AQMFFFVTLGSTDCFLLAIMA-------YDRYVAICHPL 134

Query: 202 HFQQLCKR 225
           H+  +  R
Sbjct: 135 HYTLIMTR 142


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,268,780
Number of Sequences: 219361
Number of extensions: 1134373
Number of successful extensions: 2340
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2340
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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