ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
2dbj|AK073946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 4e-41
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 176 4e-41
4emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388... 176 4e-41
5emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa... 141 2e-30
6gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome ... 42 1.5
7gb|AC148455.2| Xenopus tropicalis clone CH216-165I8, complete se... 42 1.5
8gb|AC135806.4| Mus musculus BAC clone RP24-289M10 from chromosom... 42 1.5
9gb|AC124548.5| Mus musculus BAC clone RP23-276P11 from 18, compl... 42 1.5
10gb|AC010342.5|AC010342 Homo sapiens chromosome 5 clone CTD-2015B... 42 1.5
11gb|AC162898.10| Mus musculus chromosome 5, clone RP23-391P21, co... 40 5.8
12gb|AC120181.10| Mus musculus chromosome 12, clone RP24-500I11, c... 40 5.8
13gb|AC154644.2| Mus musculus BAC clone RP23-278G20 from chromosom... 40 5.8
14gb|AY438039.1| Macropus eugenii MHC class II antigen (Maeu-DBB) ... 40 5.8
15emb|BX908806.20| Zebrafish DNA sequence from clone DKEY-43A14 in... 40 5.8
16emb|CR974571.9| Mouse DNA sequence from clone RP23-145P19 on chr... 40 5.8
17gb|AC116950.5| Mus musculus BAC clone RP23-56K4 from 15, complet... 40 5.8
18emb|AL591852.10| Human DNA sequence from clone RP11-249H20 on ch... 40 5.8
19emb|AL354833.9| Human DNA sequence from clone RP11-157L14 on chr... 40 5.8
20gb|DQ436495.1| Homo sapiens death-associated protein kinase 1 (D... 40 5.8
21emb|BX927071.12| Zebrafish DNA sequence from clone DKEY-286O23 i... 40 5.8
22emb|BX465860.7| Zebrafish DNA sequence from clone DKEY-29L21 in ... 40 5.8
23emb|AL953848.17| Zebrafish DNA sequence from clone CH211-244K5 i... 40 5.8
24gb|AC092400.1|AC092400 Drosophila melanogaster, chromosome 2L, r... 40 5.8
25gb|AC092396.1|AC092396 Drosophila melanogaster, chromosome 2L, r... 40 5.8
26gb|AC002059.3| Homo sapiens Chromosome 22q12 PAC Clone p704f1059... 40 5.8
27gb|L48038.4| Structure of the promoter and genomic organization ... 40 5.8
28gb|AC000026.3| Homo sapiens Chromosome 22q12 BAC Clone 58b8 In M... 40 5.8
29dbj|AB208128.1| Trichechus manatus DNA, AfroSINE locus Ma063 40 5.8
30gb|AC084579.1|CBRG40E01 Caenorhabditis briggsae cosmid G40E01, c... 40 5.8
31emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chr... 40 5.8
32emb|AL929093.6| Zebrafish DNA sequence from clone CH211-149P10, ... 40 5.8
33emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in... 40 5.8
34gb|AC118935.7| Mus musculus chromosome 5, clone RP24-172P15, com... 40 5.8
35emb|CT025694.11| Mouse DNA sequence from clone RP24-66N5 on chro... 40 5.8
36gb|AE003650.2| Drosophila melanogaster chromosome 2L, section 59... 40 5.8
37gb|AC116763.11| Mus musculus chromosome 5, clone RP23-385G21, co... 40 5.8
38emb|AL808119.6| Mouse DNA sequence from clone RP23-70J9 on chrom... 40 5.8
39emb|AL844483.5| Mouse DNA sequence from clone RP23-245N10 on chr... 40 5.8 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  176 bits (89), Expect = 4e-41
 Identities = 200/237 (84%)
 Strand = Plus / Plus

                                                                            
Query: 199      gttcatttccagcaattgtgtaagagacacagaactccaccgttcagctccctcttggag 258
                ||||||||| | ||||||||||||||| |||| |||||| |  |||  ||| ||||| ||
Sbjct: 26157817 gttcatttctatcaattgtgtaagagagacagcactccatctctcaattccttcttgaag 26157876

                                                                            
Query: 259      ttgggcatagagtagtcgcttgacggaatcaatgcaaatactcacggtgccaaattcata 318
                ||| || |||||||| ||||| || || || ||||||||||| ||||||||||| |||||
Sbjct: 26157877 ttgtgcgtagagtaggcgcttcacagagtcgatgcaaatacttacggtgccaaactcata 26157936

                                                                            
Query: 319      cacttgcatacctttgtagaatttgttaactctaggcataaacaacaaaccttggtcacc 378
                |||| ||||||| |||||||||||   |||||| ||||||||||| || ||||||||   
Sbjct: 26157937 cactggcataccattgtagaatttaccaactctgggcataaacaataagccttggtccat 26157996

                                                                         
Query: 379      cgcatatgcctgaatagactccttgaagctcatctctgacatggctgctcctggcac 435
                 ||||||||||| ||||||||||| |||||||| || | ||||||||||||||||||
Sbjct: 26157997 tgcatatgcctggatagactccttaaagctcatatccgccatggctgctcctggcac 26158053



 Score =  141 bits (71), Expect = 2e-30
 Identities = 164/195 (84%)
 Strand = Plus / Minus

                                                                            
Query: 216      gtgtaagagacacagaactccaccgttcagctccctcttggagttgggcatagagtagtc 275
                ||||||||||||||| |||||| |  |||  ||| ||||| ||||| || ||||||||  
Sbjct: 25853267 gtgtaagagacacagcactccatctctcaattccttcttgaagttgtgcttagagtaggt 25853208

                                                                            
Query: 276      gcttgacggaatcaatgcaaatactcacggtgccaaattcatacacttgcatacctttgt 335
                |||| || ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||
Sbjct: 25853207 gcttcacagaatcaatgcaaatactcacggtgccaaactcatacactggcataccattgt 25853148

                                                                            
Query: 336      agaatttgttaactctaggcataaacaacaaaccttggtcacccgcatatgcctgaatag 395
                |||||||   |||||||||||||||||  || |||||  |    ||||||||||| ||||
Sbjct: 25853147 agaatttaccaactctaggcataaacagtaagccttgtgccattgcatatgcctggatag 25853088

                               
Query: 396      actccttgaagctca 410
                ||||||| |||||||
Sbjct: 25853087 actccttaaagctca 25853073
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>dbj|AK073946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071N19, full
            insert sequence
          Length = 2778

 Score =  176 bits (89), Expect = 4e-41
 Identities = 200/237 (84%)
 Strand = Plus / Minus

                                                                        
Query: 199  gttcatttccagcaattgtgtaagagacacagaactccaccgttcagctccctcttggag 258
            ||||||||| | ||||||||||||||| |||| |||||| |  |||  ||| ||||| ||
Sbjct: 2582 gttcatttctatcaattgtgtaagagagacagcactccatctctcaattccttcttgaag 2523

                                                                        
Query: 259  ttgggcatagagtagtcgcttgacggaatcaatgcaaatactcacggtgccaaattcata 318
            ||| || |||||||| ||||| || || || ||||||||||| ||||||||||| |||||
Sbjct: 2522 ttgtgcgtagagtaggcgcttcacagagtcgatgcaaatacttacggtgccaaactcata 2463

                                                                        
Query: 319  cacttgcatacctttgtagaatttgttaactctaggcataaacaacaaaccttggtcacc 378
            |||| ||||||| |||||||||||   |||||| ||||||||||| || ||||||||   
Sbjct: 2462 cactggcataccattgtagaatttaccaactctgggcataaacaataagccttggtccat 2403

                                                                     
Query: 379  cgcatatgcctgaatagactccttgaagctcatctctgacatggctgctcctggcac 435
             ||||||||||| ||||||||||| |||||||| || | ||||||||||||||||||
Sbjct: 2402 tgcatatgcctggatagactccttaaagctcatatccgccatggctgctcctggcac 2346
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  176 bits (89), Expect = 4e-41
 Identities = 200/237 (84%)
 Strand = Plus / Plus

                                                                            
Query: 199      gttcatttccagcaattgtgtaagagacacagaactccaccgttcagctccctcttggag 258
                ||||||||| | ||||||||||||||| |||| |||||| |  |||  ||| ||||| ||
Sbjct: 26085993 gttcatttctatcaattgtgtaagagagacagcactccatctctcaattccttcttgaag 26086052

                                                                            
Query: 259      ttgggcatagagtagtcgcttgacggaatcaatgcaaatactcacggtgccaaattcata 318
                ||| || |||||||| ||||| || || || ||||||||||| ||||||||||| |||||
Sbjct: 26086053 ttgtgcgtagagtaggcgcttcacagagtcgatgcaaatacttacggtgccaaactcata 26086112

                                                                            
Query: 319      cacttgcatacctttgtagaatttgttaactctaggcataaacaacaaaccttggtcacc 378
                |||| ||||||| |||||||||||   |||||| ||||||||||| || ||||||||   
Sbjct: 26086113 cactggcataccattgtagaatttaccaactctgggcataaacaataagccttggtccat 26086172

                                                                         
Query: 379      cgcatatgcctgaatagactccttgaagctcatctctgacatggctgctcctggcac 435
                 ||||||||||| ||||||||||| |||||||| || | ||||||||||||||||||
Sbjct: 26086173 tgcatatgcctggatagactccttaaagctcatatccgccatggctgctcctggcac 26086229



 Score =  141 bits (71), Expect = 2e-30
 Identities = 164/195 (84%)
 Strand = Plus / Minus

                                                                            
Query: 216      gtgtaagagacacagaactccaccgttcagctccctcttggagttgggcatagagtagtc 275
                ||||||||||||||| |||||| |  |||  ||| ||||| ||||| || ||||||||  
Sbjct: 25781443 gtgtaagagacacagcactccatctctcaattccttcttgaagttgtgcttagagtaggt 25781384

                                                                            
Query: 276      gcttgacggaatcaatgcaaatactcacggtgccaaattcatacacttgcatacctttgt 335
                |||| || ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||
Sbjct: 25781383 gcttcacagaatcaatgcaaatactcacggtgccaaactcatacactggcataccattgt 25781324

                                                                            
Query: 336      agaatttgttaactctaggcataaacaacaaaccttggtcacccgcatatgcctgaatag 395
                |||||||   |||||||||||||||||  || |||||  |    ||||||||||| ||||
Sbjct: 25781323 agaatttaccaactctaggcataaacagtaagccttgtgccattgcatatgcctggatag 25781264

                               
Query: 396      actccttgaagctca 410
                ||||||| |||||||
Sbjct: 25781263 actccttaaagctca 25781249
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>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144241

 Score =  176 bits (89), Expect = 4e-41
 Identities = 200/237 (84%)
 Strand = Plus / Plus

                                                                         
Query: 199   gttcatttccagcaattgtgtaagagacacagaactccaccgttcagctccctcttggag 258
             ||||||||| | ||||||||||||||| |||| |||||| |  |||  ||| ||||| ||
Sbjct: 48055 gttcatttctatcaattgtgtaagagagacagcactccatctctcaattccttcttgaag 48114

                                                                         
Query: 259   ttgggcatagagtagtcgcttgacggaatcaatgcaaatactcacggtgccaaattcata 318
             ||| || |||||||| ||||| || || || ||||||||||| ||||||||||| |||||
Sbjct: 48115 ttgtgcgtagagtaggcgcttcacagagtcgatgcaaatacttacggtgccaaactcata 48174

                                                                         
Query: 319   cacttgcatacctttgtagaatttgttaactctaggcataaacaacaaaccttggtcacc 378
             |||| ||||||| |||||||||||   |||||| ||||||||||| || ||||||||   
Sbjct: 48175 cactggcataccattgtagaatttaccaactctgggcataaacaataagccttggtccat 48234

                                                                      
Query: 379   cgcatatgcctgaatagactccttgaagctcatctctgacatggctgctcctggcac 435
              ||||||||||| ||||||||||| |||||||| || | ||||||||||||||||||
Sbjct: 48235 tgcatatgcctggatagactccttaaagctcatatccgccatggctgctcctggcac 48291
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>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137492

 Score =  141 bits (71), Expect = 2e-30
 Identities = 164/195 (84%)
 Strand = Plus / Minus

                                                                         
Query: 216   gtgtaagagacacagaactccaccgttcagctccctcttggagttgggcatagagtagtc 275
             ||||||||||||||| |||||| |  |||  ||| ||||| ||||| || ||||||||  
Sbjct: 74718 gtgtaagagacacagcactccatctctcaattccttcttgaagttgtgcttagagtaggt 74659

                                                                         
Query: 276   gcttgacggaatcaatgcaaatactcacggtgccaaattcatacacttgcatacctttgt 335
             |||| || ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||
Sbjct: 74658 gcttcacagaatcaatgcaaatactcacggtgccaaactcatacactggcataccattgt 74599

                                                                         
Query: 336   agaatttgttaactctaggcataaacaacaaaccttggtcacccgcatatgcctgaatag 395
             |||||||   |||||||||||||||||  || |||||  |    ||||||||||| ||||
Sbjct: 74598 agaatttaccaactctaggcataaacagtaagccttgtgccattgcatatgcctggatag 74539

                            
Query: 396   actccttgaagctca 410
             ||||||| |||||||
Sbjct: 74538 actccttaaagctca 74524
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>gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome 16, complete sequence
          Length = 212628

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 201    tcatttccagcaattgtgtaa 221
              |||||||||||||||||||||
Sbjct: 163586 tcatttccagcaattgtgtaa 163606
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>gb|AC148455.2| Xenopus tropicalis clone CH216-165I8, complete sequence
          Length = 170350

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 131    tgctcacaaaaatgatcacat 151
              |||||||||||||||||||||
Sbjct: 107305 tgctcacaaaaatgatcacat 107325
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>gb|AC135806.4| Mus musculus BAC clone RP24-289M10 from chromosome 18, complete sequence
          Length = 179327

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 156    cttccaagttatatatgatct 176
              |||||||||||||||||||||
Sbjct: 140500 cttccaagttatatatgatct 140520
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>gb|AC124548.5| Mus musculus BAC clone RP23-276P11 from 18, complete sequence
          Length = 173805

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 156   cttccaagttatatatgatct 176
             |||||||||||||||||||||
Sbjct: 69345 cttccaagttatatatgatct 69365
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>gb|AC010342.5|AC010342 Homo sapiens chromosome 5 clone CTD-2015B23, complete sequence
          Length = 126010

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 82    tcagatacatcatcagaaact 102
             |||||||||||||||||||||
Sbjct: 70243 tcagatacatcatcagaaact 70263
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>gb|AC162898.10| Mus musculus chromosome 5, clone RP23-391P21, complete sequence
          Length = 202279

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   ctgacatggctgctcctggc 433
             ||||||||||||||||||||
Sbjct: 68637 ctgacatggctgctcctggc 68618
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>gb|AC120181.10| Mus musculus chromosome 12, clone RP24-500I11, complete sequence
          Length = 212015

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    taagagacacagaactccac 238
              ||||||||||||||||||||
Sbjct: 181584 taagagacacagaactccac 181603
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>gb|AC154644.2| Mus musculus BAC clone RP23-278G20 from chromosome 14, complete
             sequence
          Length = 175685

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 394   agactccttgaagctcatctctga 417
             ||||||| ||||||||||||||||
Sbjct: 65992 agactccatgaagctcatctctga 66015
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>gb|AY438039.1| Macropus eugenii MHC class II antigen (Maeu-DBB) mRNA, Maeu-DBB*02
           allele, complete cds
          Length = 1269

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 406 gctcatctctgacatggctg 425
           ||||||||||||||||||||
Sbjct: 86  gctcatctctgacatggctg 105
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>emb|BX908806.20| Zebrafish DNA sequence from clone DKEY-43A14 in linkage group 17,
             complete sequence
          Length = 67753

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    aaaatcacattcagatacat 91
             ||||||||||||||||||||
Sbjct: 64714 aaaatcacattcagatacat 64733
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>emb|CR974571.9| Mouse DNA sequence from clone RP23-145P19 on chromosome 12,
           complete sequence
          Length = 219782

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 219 taagagacacagaactccac 238
           ||||||||||||||||||||
Sbjct: 558 taagagacacagaactccac 577
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>gb|AC116950.5| Mus musculus BAC clone RP23-56K4 from 15, complete sequence
          Length = 225940

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    tcagaaactttgttctttat 113
             ||||||||||||||||||||
Sbjct: 63774 tcagaaactttgttctttat 63793
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>emb|AL591852.10| Human DNA sequence from clone RP11-249H20 on chromosome 9 Contains
            part of the DAPK1 gene for death-assodeath-associated
            protein kinase 1, complete sequence
          Length = 72904

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 31   attgtaggacaataaaaaccgagttcca 58
            ||||||||||||| ||||||||| ||||
Sbjct: 8212 attgtaggacaattaaaaccgagatcca 8185
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>emb|AL354833.9| Human DNA sequence from clone RP11-157L14 on chromosome 13 Contains an
             olfactory receptor pseudogene,  a novel gene (RGC32), the
             3' end of a novel gene (contains KIAA0564 and FLJ21779)
             possible ortholog of RIKEN cDNA 1300010F03 gene, and 2 CpG
             islands, complete sequence
          Length = 158871

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccttgaagctcatctctg 416
             ||||||||||||||||||||
Sbjct: 61357 ctccttgaagctcatctctg 61376
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>gb|DQ436495.1| Homo sapiens death-associated protein kinase 1 (DAPK1) gene, complete
             cds
          Length = 212999

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 31    attgtaggacaataaaaaccgagttcca 58
             ||||||||||||| ||||||||| ||||
Sbjct: 81018 attgtaggacaattaaaaccgagatcca 80991
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>emb|BX927071.12| Zebrafish DNA sequence from clone DKEY-286O23 in linkage group 18,
              complete sequence
          Length = 143863

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    catatgcctgaatagactcc 400
              ||||||||||||||||||||
Sbjct: 122529 catatgcctgaatagactcc 122510
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>emb|BX465860.7| Zebrafish DNA sequence from clone DKEY-29L21 in linkage group 1,
             complete sequence
          Length = 153901

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   tctaggcataaacaacaaac 368
             ||||||||||||||||||||
Sbjct: 42753 tctaggcataaacaacaaac 42734
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>emb|AL953848.17| Zebrafish DNA sequence from clone CH211-244K5 in linkage group 6,
              complete sequence
          Length = 201360

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 310    aaattcatacacttgcataccttt 333
              |||| |||||||||||||||||||
Sbjct: 155158 aaatacatacacttgcataccttt 155135
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>gb|AC092400.1|AC092400 Drosophila melanogaster, chromosome 2L, region 36D-36E, BAC clone
            BACR39L06, complete sequence
          Length = 178953

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   aatgtggaaaatcacattca 84
            ||||||||||||||||||||
Sbjct: 2716 aatgtggaaaatcacattca 2735
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>gb|AC092396.1|AC092396 Drosophila melanogaster, chromosome 2L, region 36X-36X, BAC clone
             BACR21C10, complete sequence
          Length = 164439

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    aatgtggaaaatcacattca 84
             ||||||||||||||||||||
Sbjct: 75393 aatgtggaaaatcacattca 75374
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>gb|AC002059.3| Homo sapiens Chromosome 22q12 PAC Clone p704f1059q13 In Meningioma
              Deletion Region, complete sequence
          Length = 173029

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 57     catgttgaaatgtggaaaatcaca 80
              ||||||||||||||||||| ||||
Sbjct: 117536 catgttgaaatgtggaaaaccaca 117513
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>gb|L48038.4| Structure of the promoter and genomic organization of the human
             beta-adaptin gene (BAM22) from chromosome 22q12, complete
             sequence
          Length = 40704

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 57    catgttgaaatgtggaaaatcaca 80
             ||||||||||||||||||| ||||
Sbjct: 40010 catgttgaaatgtggaaaaccaca 39987
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>gb|AC000026.3| Homo sapiens Chromosome 22q12 BAC Clone 58b8 In Meningioma Deletion
              Region, complete sequence
          Length = 126312

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 57     catgttgaaatgtggaaaatcaca 80
              ||||||||||||||||||| ||||
Sbjct: 125618 catgttgaaatgtggaaaaccaca 125595
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>dbj|AB208128.1| Trichechus manatus DNA, AfroSINE locus Ma063
          Length = 600

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 349 tctaggcataaacaacaaac 368
           ||||||||||||||||||||
Sbjct: 328 tctaggcataaacaacaaac 347
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>gb|AC084579.1|CBRG40E01 Caenorhabditis briggsae cosmid G40E01, complete sequence
          Length = 11697

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 239  cgttcagctccctcttggagttgg 262
            |||||||| |||||||||||||||
Sbjct: 2152 cgttcagcaccctcttggagttgg 2129
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>emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chromosome X, complete
             sequence
          Length = 125394

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   ccatcctgttcatttccagc 211
             ||||||||||||||||||||
Sbjct: 22962 ccatcctgttcatttccagc 22943
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>emb|AL929093.6| Zebrafish DNA sequence from clone CH211-149P10, complete sequence
          Length = 177248

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 349    tctaggcataaacaacaaac 368
              ||||||||||||||||||||
Sbjct: 115568 tctaggcataaacaacaaac 115587
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>emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in linkage group 18,
              complete sequence
          Length = 145250

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    catatgcctgaatagactcc 400
              ||||||||||||||||||||
Sbjct: 140238 catatgcctgaatagactcc 140257
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>gb|AC118935.7| Mus musculus chromosome 5, clone RP24-172P15, complete sequence
          Length = 168119

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    atgatcacatgaaacttcca 161
              ||||||||||||||||||||
Sbjct: 159834 atgatcacatgaaacttcca 159815
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>emb|CT025694.11| Mouse DNA sequence from clone RP24-66N5 on chromosome 14, complete
             sequence
          Length = 203022

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 394   agactccttgaagctcatctctga 417
             ||||||| ||||||||||||||||
Sbjct: 81786 agactccatgaagctcatctctga 81809
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>gb|AE003650.2| Drosophila melanogaster chromosome 2L, section 59 of 83 of the complete
              sequence
          Length = 273414

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     aatgtggaaaatcacattca 84
              ||||||||||||||||||||
Sbjct: 111154 aatgtggaaaatcacattca 111135
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>gb|AC116763.11| Mus musculus chromosome 5, clone RP23-385G21, complete sequence
          Length = 196521

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    atgatcacatgaaacttcca 161
              ||||||||||||||||||||
Sbjct: 167589 atgatcacatgaaacttcca 167608
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>emb|AL808119.6| Mouse DNA sequence from clone RP23-70J9 on chromosome 2, complete
              sequence
          Length = 228870

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    gtaagagacacagaactcca 237
              ||||||||||||||||||||
Sbjct: 147523 gtaagagacacagaactcca 147504
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>emb|AL844483.5| Mouse DNA sequence from clone RP23-245N10 on chromosome X, complete
             sequence
          Length = 106787

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    cagttctgcatcaattattc 30
             ||||||||||||||||||||
Sbjct: 87238 cagttctgcatcaattattc 87219


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,648,442
Number of Sequences: 3902068
Number of extensions: 4648442
Number of successful extensions: 88806
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88700
Number of HSP's gapped (non-prelim): 102
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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