ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NEUM_BUFJA (P08162) Mesotocin-neurophysin MT precursor [Contains... 31 0.91
2CN12L_CAEEL (Q95QU0) CSN12-like protein 28 4.5
3LPXA_SYNY3 (Q55746) Acyl-[acyl-carrier-protein]--UDP-N-acetylglu... 28 5.9
4Y148_AERPE (Q9YFV2) UPF0211 protein APE0148 28 7.7

>NEUM_BUFJA (P08162) Mesotocin-neurophysin MT precursor [Contains: Mesotocin|
           (MT); Neurophysin MT]
          Length = 125

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 133 TPCFSSRKPPINTGPHTHLSKLCCAHDS 216
           +PC S RKP  N G +   S +CC H+S
Sbjct: 84  SPCESGRKPCGNNGGNCARSGICCNHES 111



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>CN12L_CAEEL (Q95QU0) CSN12-like protein|
          Length = 413

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 135 RTSLFLDSQDLVKPSLFYAFRNCSIPSFQN 46
           R ++F    +L + SL YAFRNC   S  N
Sbjct: 230 RKAMFDADLNLAEKSLLYAFRNCPADSMSN 259



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>LPXA_SYNY3 (Q55746) Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine|
           O-acyltransferase (EC 2.3.1.129)
           (UDP-N-acetylglucosamine acyltransferase)
          Length = 276

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 113 LSKKREVRHVSLVGNRRLTLAHTHISQNCAV 205
           +++  E   V+ +G+R L +A+ H++ NC +
Sbjct: 106 INRATEEGAVTRIGDRNLLMAYAHVAHNCVI 136



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>Y148_AERPE (Q9YFV2) UPF0211 protein APE0148|
          Length = 144

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 286 RICLFLLN--CCSVYAPLWVIEFISCCHEHSTILR 188
           R+C    N   CS+ A  W  EF    HEH TI++
Sbjct: 86  RVCKIECNGESCSIVASAWGEEFDPSRHEHRTIVK 120


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,079,830
Number of Sequences: 219361
Number of extensions: 747698
Number of successful extensions: 1591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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