Clone Name | rbastl42c08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_483801.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3145 Score = 270 bits (136), Expect = 4e-69 Identities = 250/288 (86%) Strand = Plus / Minus Query: 156 aagctgccagacttttcgaggctatcccatagacattttcagagagtccattggctgaga 215 |||||||||| || || || |||||| | || ||||| || || || ||||||||||| | Sbjct: 2907 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2848 Query: 216 taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 275 |||||||||| ||| |||||||||||||||||||| |||| ||||||| |||||| | Sbjct: 2847 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2788 Query: 276 gagagaatgctgacaccatgcgggatgccacctgaggattaattttgtcgagctgtaaaa 335 ||||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||||| Sbjct: 2787 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaaaa 2728 Query: 336 caacttcacccaagaacttgtaaccagaaccatctttcgcgtgaaaactcacaggtgacc 395 |||||||||||||||||||||||||||| |||||||| || || ||| ||||||| |||| Sbjct: 2727 caacttcacccaagaacttgtaaccagagccatcttttgcatggaaattcacaggggacc 2668 Query: 396 cacaaaagcctccaattaaagagtataccttgttcggattccgcatgt 443 ||||||| |||||||||| || || |||||||||||||||| ||||| Sbjct: 2667 cacaaaatcctccaattagcgaatacaccttgttcggattcctcatgt 2620
>dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081C24, full insert sequence Length = 2519 Score = 270 bits (136), Expect = 4e-69 Identities = 250/288 (86%) Strand = Plus / Minus Query: 156 aagctgccagacttttcgaggctatcccatagacattttcagagagtccattggctgaga 215 |||||||||| || || || |||||| | || ||||| || || || ||||||||||| | Sbjct: 2325 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2266 Query: 216 taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 275 |||||||||| ||| |||||||||||||||||||| |||| ||||||| |||||| | Sbjct: 2265 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2206 Query: 276 gagagaatgctgacaccatgcgggatgccacctgaggattaattttgtcgagctgtaaaa 335 ||||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||||| Sbjct: 2205 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaaaa 2146 Query: 336 caacttcacccaagaacttgtaaccagaaccatctttcgcgtgaaaactcacaggtgacc 395 |||||||||||||||||||||||||||| |||||||| || || ||| ||||||| |||| Sbjct: 2145 caacttcacccaagaacttgtaaccagagccatcttttgcatggaaattcacaggggacc 2086 Query: 396 cacaaaagcctccaattaaagagtataccttgttcggattccgcatgt 443 ||||||| |||||||||| || || |||||||||||||||| ||||| Sbjct: 2085 cacaaaatcctccaattagcgaatacaccttgttcggattcctcatgt 2038
>dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L14, full insert sequence Length = 3181 Score = 270 bits (136), Expect = 4e-69 Identities = 250/288 (86%) Strand = Plus / Minus Query: 156 aagctgccagacttttcgaggctatcccatagacattttcagagagtccattggctgaga 215 |||||||||| || || || |||||| | || ||||| || || || ||||||||||| | Sbjct: 2943 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2884 Query: 216 taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 275 |||||||||| ||| |||||||||||||||||||| |||| ||||||| |||||| | Sbjct: 2883 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2824 Query: 276 gagagaatgctgacaccatgcgggatgccacctgaggattaattttgtcgagctgtaaaa 335 ||||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||||| Sbjct: 2823 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaaaa 2764 Query: 336 caacttcacccaagaacttgtaaccagaaccatctttcgcgtgaaaactcacaggtgacc 395 |||||||||||||||||||||||||||| |||||||| || || ||| ||||||| |||| Sbjct: 2763 caacttcacccaagaacttgtaaccagagccatcttttgcatggaaattcacaggggacc 2704 Query: 396 cacaaaagcctccaattaaagagtataccttgttcggattccgcatgt 443 ||||||| |||||||||| || || |||||||||||||||| ||||| Sbjct: 2703 cacaaaatcctccaattagcgaatacaccttgttcggattcctcatgt 2656
>gb|AY105426.1| Zea mays PCO146438 mRNA sequence Length = 3165 Score = 196 bits (99), Expect = 4e-47 Identities = 210/247 (85%) Strand = Plus / Minus Query: 191 ttttcagagagtccattggctgagataatcatctccaactgggccttagcaagagcttgt 250 ||||| ||||| |||||||| || | |||||||||| |||||||||||||||||||||| Sbjct: 2981 ttttcggagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgt 2922 Query: 251 ctcgtctcgtcatatctcctccatcgagagaatgctgacaccatgcgggatgccacctga 310 || |||| ||| || | |||||| ||||| |||||||| ||||||||||| ||||||||| Sbjct: 2921 ctggtcttgtcgtaccgcctccaccgagaaaatgctgaaaccatgcgggaggccacctga 2862 Query: 311 ggattaattttgtcgagctgtaaaacaacttcacccaagaacttgtaaccagaaccatct 370 || || || ||||| ||||| ||||| | ||||||||||||||||| |||||||||||| Sbjct: 2861 gggtttatcttgtcaagctgcaaaacgatctcacccaagaacttgtacccagaaccatct 2802 Query: 371 ttcgcgtgaaaactcacaggtgacccacaaaagcctccaattaaagagtataccttgttc 430 |||||||| || |||||||||| ||||| || || || |||| ||||| |||||||| Sbjct: 2801 ttcgcgtggaagttcacaggtgagccacagaatcccccgattagtgagtacaccttgttg 2742 Query: 431 ggattcc 437 ||||||| Sbjct: 2741 ggattcc 2735
>gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence Length = 2068 Score = 192 bits (97), Expect = 7e-46 Identities = 205/241 (85%) Strand = Plus / Minus Query: 197 gagagtccattggctgagataatcatctccaactgggccttagcaagagcttgtctcgtc 256 ||||| |||||||| || | |||||||||| |||||||||||||||||||||||| ||| Sbjct: 1849 gagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgtctggtc 1790 Query: 257 tcgtcatatctcctccatcgagagaatgctgacaccatgcgggatgccacctgaggatta 316 | ||| || | |||||| ||||| |||||||| ||||||||||| ||||||||||| || Sbjct: 1789 ttgtcgtaccgcctccaccgagaaaatgctgaaaccatgcgggaggccacctgagggttt 1730 Query: 317 attttgtcgagctgtaaaacaacttcacccaagaacttgtaaccagaaccatctttcgcg 376 || ||||| ||||| ||||| | ||||||||||||||||| |||||||||||||||||| Sbjct: 1729 atcttgtcaagctgcaaaacgatctcacccaagaacttgtacccagaaccatctttcgcg 1670 Query: 377 tgaaaactcacaggtgacccacaaaagcctccaattaaagagtataccttgttcggattc 436 || || |||||||||| ||||| || || || |||| ||||| |||||||| |||||| Sbjct: 1669 tggaagttcacaggtgagccacagaatcccccgattagtgagtacaccttgttgggattc 1610 Query: 437 c 437 | Sbjct: 1609 c 1609
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 137 bits (69), Expect = 3e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 305 acctgaggattaattttgtcgagctgtaaaacaacttcacccaagaacttgtaaccagaa 364 ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 28166653 acctgaggatttatcttgtctagctgtaaaacaacttcacccaagaacttgtaaccagag 28166712 Query: 365 ccatctttcgcgtgaaaactcacaggtgacccacaaaagcctccaatta 413 |||||||| || || ||| ||||||| ||||||||||| |||||||||| Sbjct: 28166713 ccatcttttgcatggaaattcacaggggacccacaaaatcctccaatta 28166761 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 234 ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgagagaatgctgacacca 293 ||||||||||||||||||| |||| ||||||| |||||| |||||||| |||||||||| Sbjct: 28166495 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgagagaaagctgacacca 28166554 Query: 294 tgcgggatgccacct 308 ||||||| ||||||| Sbjct: 28166555 tgcgggaggccacct 28166569 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 ataccttgttcggattccgcatgt 443 |||||||||||||||||| ||||| Sbjct: 28166842 ataccttgttcggattcctcatgt 28166865
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0543D10 Length = 134866 Score = 137 bits (69), Expect = 3e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 305 acctgaggattaattttgtcgagctgtaaaacaacttcacccaagaacttgtaaccagaa 364 ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 50126 acctgaggatttatcttgtctagctgtaaaacaacttcacccaagaacttgtaaccagag 50185 Query: 365 ccatctttcgcgtgaaaactcacaggtgacccacaaaagcctccaatta 413 |||||||| || || ||| ||||||| ||||||||||| |||||||||| Sbjct: 50186 ccatcttttgcatggaaattcacaggggacccacaaaatcctccaatta 50234 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 234 ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgagagaatgctgacacca 293 ||||||||||||||||||| |||| ||||||| |||||| |||||||| |||||||||| Sbjct: 49968 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgagagaaagctgacacca 50027 Query: 294 tgcgggatgccacct 308 ||||||| ||||||| Sbjct: 50028 tgcgggaggccacct 50042 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 ataccttgttcggattccgcatgt 443 |||||||||||||||||| ||||| Sbjct: 50315 ataccttgttcggattcctcatgt 50338
>ref|NM_105053.3| Arabidopsis thaliana membrane alanyl aminopeptidase AT1G63770 transcript variant AT1G63770.1 mRNA, complete cds Length = 3229 Score = 46.1 bits (23), Expect = 0.097 Identities = 68/83 (81%) Strand = Plus / Minus Query: 287 gacaccatgcgggatgccacctgaggattaattttgtcgagctgtaaaacaacttcaccc 346 |||||||| || || || |||||||| || | |||||| | ||| | ||||| |||||| Sbjct: 2811 gacaccatacgagaagcaacctgagggttcaatttgtctaactggacaacaatgtcaccc 2752 Query: 347 aagaacttgtaaccagaaccatc 369 |||||||||||||| || ||||| Sbjct: 2751 aagaacttgtaacctgatccatc 2729
>gb|BT010361.1| Arabidopsis thaliana At1g63770 mRNA, complete cds Length = 2652 Score = 46.1 bits (23), Expect = 0.097 Identities = 68/83 (81%) Strand = Plus / Minus Query: 287 gacaccatgcgggatgccacctgaggattaattttgtcgagctgtaaaacaacttcaccc 346 |||||||| || || || |||||||| || | |||||| | ||| | ||||| |||||| Sbjct: 2519 gacaccatacgagaagcaacctgagggttcaatttgtctaactggacaacaatgtcaccc 2460 Query: 347 aagaacttgtaaccagaaccatc 369 |||||||||||||| || ||||| Sbjct: 2459 aagaacttgtaacctgatccatc 2437
>gb|AY960336.1| Arabidopsis thaliana M1 aminopeptidase mRNA, complete cds, alternatively spliced Length = 3051 Score = 46.1 bits (23), Expect = 0.097 Identities = 68/83 (81%) Strand = Plus / Minus Query: 287 gacaccatgcgggatgccacctgaggattaattttgtcgagctgtaaaacaacttcaccc 346 |||||||| || || || |||||||| || | |||||| | ||| | ||||| |||||| Sbjct: 2747 gacaccatacgagaagcaacctgagggttcaatttgtctaactggacaacaatgtcaccc 2688 Query: 347 aagaacttgtaaccagaaccatc 369 |||||||||||||| || ||||| Sbjct: 2687 aagaacttgtaacctgatccatc 2665
>gb|BT002074.1| Arabidopsis thaliana putative aminopeptidase (At1g63770) mRNA, complete cds Length = 3056 Score = 46.1 bits (23), Expect = 0.097 Identities = 68/83 (81%) Strand = Plus / Minus Query: 287 gacaccatgcgggatgccacctgaggattaattttgtcgagctgtaaaacaacttcaccc 346 |||||||| || || || |||||||| || | |||||| | ||| | ||||| |||||| Sbjct: 2749 gacaccatacgagaagcaacctgagggttcaatttgtctaactggacaacaatgtcaccc 2690 Query: 347 aagaacttgtaaccagaaccatc 369 |||||||||||||| || ||||| Sbjct: 2689 aagaacttgtaacctgatccatc 2667
>emb|AL031122.3|HS503N11 Human DNA sequence from clone RP3-503N11 on chromosome 6p24.1-24.3, complete sequence Length = 94749 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 352 cttgtaaccagaaccatctttc 373 |||||||||||||||||||||| Sbjct: 49323 cttgtaaccagaaccatctttc 49302
>ref|NM_202354.1| Arabidopsis thaliana membrane alanyl aminopeptidase AT1G63770 transcript variant AT1G63770.2 mRNA, complete cds Length = 3331 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 341 tcacccaagaacttgtaaccagaaccatc 369 |||||||||||||||||||| || ||||| Sbjct: 2753 tcacccaagaacttgtaacctgatccatc 2725
>emb|BX817670.1|CNS0AE3V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL36ZA11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 654 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 341 tcacccaagaacttgtaaccagaaccatc 369 |||||||||||||||||||| || ||||| Sbjct: 187 tcacccaagaacttgtaacctgatccatc 159
>gb|AC011622.6|AC011622 Arabidopsis thaliana chromosome 1 BAC F24D7 genomic sequence, complete sequence Length = 87575 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 341 tcacccaagaacttgtaaccagaaccatc 369 |||||||||||||||||||| || ||||| Sbjct: 10530 tcacccaagaacttgtaacctgatccatc 10502
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 actggcaaaatcaaatttgt 136 |||||||||||||||||||| Sbjct: 36039730 actggcaaaatcaaatttgt 36039749
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 actggcaaaatcaaatttgt 136 |||||||||||||||||||| Sbjct: 101241 actggcaaaatcaaatttgt 101260
>gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complete sequence Length = 121737 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 taaatacagcagaatatatt 72 |||||||||||||||||||| Sbjct: 89696 taaatacagcagaatatatt 89677
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 aaatcaaatttgtttctttgcatc 147 |||||||||| ||||||||||||| Sbjct: 11217526 aaatcaaattagtttctttgcatc 11217503
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ccactatagtagcctgttat 41 |||||||||||||||||||| Sbjct: 16754860 ccactatagtagcctgttat 16754841
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 actggcaaaatcaaatttgt 136 |||||||||||||||||||| Sbjct: 36129804 actggcaaaatcaaatttgt 36129823
>gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, complete sequence Length = 156582 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 taaatacagcagaatatatt 72 |||||||||||||||||||| Sbjct: 45601 taaatacagcagaatatatt 45620
>gb|AC104512.11| Drosophila melanogaster BAC RP98-39C15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172654 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ctggcaaaatcaaatttgtt 137 |||||||||||||||||||| Sbjct: 116140 ctggcaaaatcaaatttgtt 116159
>gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) genomic sequence Length = 43180 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 ctaaatacagcagaatatattcagttaa 79 |||||| |||||||||||||||| |||| Sbjct: 28764 ctaaatgcagcagaatatattcatttaa 28737
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ccactatagtagcctgttat 41 |||||||||||||||||||| Sbjct: 106347 ccactatagtagcctgttat 106328
>emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-388G3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176833 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 agacattttcagagagtcca 205 |||||||||||||||||||| Sbjct: 33908 agacattttcagagagtcca 33927
>gb|AE003442.3| Drosophila melanogaster chromosome X, section 26 of 74 of the complete sequence Length = 316794 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ctggcaaaatcaaatttgtt 137 |||||||||||||||||||| Sbjct: 27532 ctggcaaaatcaaatttgtt 27513
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 aaatcaaatttgtttctttgcatc 147 |||||||||| ||||||||||||| Sbjct: 11217197 aaatcaaattagtttctttgcatc 11217174
>emb|AL731875.2|CNS08C8F Oryza sativa chromosome 12, . BAC OJ1060_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 108805 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 aaatcaaatttgtttctttgcatc 147 |||||||||| ||||||||||||| Sbjct: 39132 aaatcaaattagtttctttgcatc 39155
>gb|CP000173.1| Drosophila melanogaster genomic scaffold 211000022279541 Length = 57826 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aaaatcaaatttgtttcttt 142 |||||||||||||||||||| Sbjct: 36536 aaaatcaaatttgtttcttt 36555 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,092,137 Number of Sequences: 3902068 Number of extensions: 4092137 Number of successful extensions: 90669 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90555 Number of HSP's gapped (non-prelim): 114 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)